Wall clock time and date at job start Wed Apr 1 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 C 1.53001 * 109.46999 * 120.00075 * 2 1 3 5 5 N 1.46495 * 109.47127 * 175.23485 * 4 2 1 6 6 N 1.28442 * 125.19351 * 266.06808 * 5 4 2 7 7 C 1.30866 * 110.92609 * 180.27872 * 6 5 4 8 8 C 1.39668 * 107.86443 * 359.71326 * 7 6 5 9 9 C 1.36610 * 125.18890 * 85.85475 * 5 4 2 10 10 C 1.47158 * 126.88350 * 0.02562 * 9 5 4 11 11 O 1.21628 * 120.00015 * 206.24416 * 10 9 5 12 12 N 1.34778 * 120.00314 * 26.23569 * 10 9 5 13 13 C 1.46501 * 120.00065 * 185.49751 * 12 10 9 14 14 H 1.09000 * 109.32153 * 52.30828 * 13 12 10 15 15 C 1.53023 * 109.32845 * 292.83851 * 13 12 10 16 16 C 1.53974 * 108.82878 * 295.14784 * 15 13 12 17 17 H 1.08998 * 112.99614 * 168.09222 * 16 15 13 18 18 C 1.55435 * 106.41056 * 293.81997 * 16 15 13 19 19 C 1.55170 * 100.35206 * 73.37547 * 18 16 15 20 20 H 1.09004 * 113.04806 * 162.98341 * 19 18 16 21 21 C 1.52990 * 109.32380 * 171.94803 * 13 12 10 22 22 N 1.47791 * 104.25493 * 40.54711 * 19 18 16 23 23 C 1.36935 * 125.85653 * 153.50258 * 22 19 18 24 24 H 1.07998 * 120.00167 * 0.64855 * 23 22 19 25 25 C 1.38809 * 120.00321 * 180.64506 * 23 22 19 26 26 N 1.31623 * 119.99994 * 5.61010 * 25 23 22 27 27 Si 1.86798 * 120.00122 * 185.61412 * 25 23 22 28 28 H 1.48493 * 109.47309 * 4.51528 * 27 25 23 29 29 H 1.48499 * 109.47210 * 124.51804 * 27 25 23 30 30 H 1.48504 * 109.46999 * 244.51425 * 27 25 23 31 31 C 1.47081 * 108.28922 * 333.54032 * 22 19 18 32 32 H 1.09003 * 109.47248 * 304.95953 * 1 2 3 33 33 H 1.08994 * 109.47116 * 64.96116 * 1 2 3 34 34 H 1.08999 * 109.47444 * 184.96374 * 1 2 3 35 35 H 1.08997 * 109.47098 * 239.99456 * 2 1 3 36 36 H 1.08999 * 109.46921 * 184.05551 * 3 2 1 37 37 H 1.08998 * 109.46929 * 304.04861 * 3 2 1 38 38 H 1.09001 * 109.46944 * 64.05483 * 3 2 1 39 39 H 1.08997 * 109.47357 * 55.23430 * 4 2 1 40 40 H 1.09003 * 109.46891 * 295.23649 * 4 2 1 41 41 H 1.08000 * 126.06451 * 179.74645 * 7 6 5 42 42 H 1.08001 * 127.31842 * 179.97438 * 8 7 6 43 43 H 0.97002 * 120.00001 * 5.50283 * 12 10 9 44 44 H 1.08998 * 109.58070 * 175.34422 * 15 13 12 45 45 H 1.08999 * 109.57665 * 54.94859 * 15 13 12 46 46 H 1.09002 * 111.23419 * 191.15018 * 18 16 15 47 47 H 1.09002 * 111.23488 * 315.59853 * 18 16 15 48 48 H 1.09006 * 109.53322 * 305.29249 * 21 13 12 49 49 H 1.08995 * 109.59552 * 185.10294 * 21 13 12 50 50 H 0.96997 * 120.00347 * 174.97964 * 26 25 23 51 51 H 1.08997 * 109.97666 * 241.73861 * 31 22 19 52 52 H 1.08998 * 109.97893 * 120.45818 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5004 -0.8215 1.1933 6 7 4.1565 -1.8246 0.7316 7 6 5.4461 -1.6211 0.8217 8 6 5.6423 -0.3612 1.3917 9 6 4.3724 0.1395 1.6204 10 6 4.0301 1.4430 2.2115 11 8 4.8041 2.3763 2.1158 12 7 2.8588 1.6027 2.8588 13 6 2.4636 2.9281 3.3420 14 1 2.5279 3.6445 2.5230 15 6 3.4098 3.3609 4.4640 16 6 3.2315 2.4076 5.6599 17 1 4.0097 2.5210 6.4147 18 6 1.7926 2.6432 6.1985 19 6 0.9615 1.9517 5.0854 20 1 -0.0621 1.7338 5.3901 21 6 1.0228 2.8717 3.8534 22 7 1.7277 0.7290 4.7657 23 6 1.2099 -0.4317 4.2560 24 1 0.1536 -0.5042 4.0432 25 6 2.0427 -1.5153 4.0127 26 7 3.3076 -1.4672 4.3735 27 14 1.3684 -3.0416 3.1731 28 1 -0.0417 -2.8042 2.7726 29 1 2.1813 -3.3434 1.9675 30 1 1.4296 -4.1908 4.1117 31 6 3.1416 0.9723 5.0897 32 1 -0.3634 0.5889 0.8422 33 1 -0.3633 0.4349 -0.9310 34 1 -0.3634 -1.0238 0.0889 35 1 1.8933 -0.5139 -0.8899 36 1 3.1275 1.4434 -0.0727 37 1 1.6186 1.9768 -0.8515 38 1 1.7372 1.9349 0.9241 39 1 1.6086 -1.7213 1.2930 40 1 1.7480 -0.1605 2.1372 41 1 6.2211 -2.3057 0.5101 42 1 6.5846 0.1199 1.6085 43 1 2.2774 0.8401 3.0048 44 1 3.1715 4.3795 4.7703 45 1 4.4401 3.3152 4.1110 46 1 1.6465 2.1541 7.1617 47 1 1.5630 3.7070 6.2594 48 1 0.3737 2.4775 3.0715 49 1 0.6936 3.8733 4.1298 50 1 3.8715 -2.2497 4.2702 51 1 3.7495 0.8909 4.1886 52 1 3.4819 0.2535 5.8350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047080065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:53 Heat of formation + Delta-G solvation = 135.050996 kcal Electronic energy + Delta-G solvation = -36028.716245 eV Core-core repulsion = 32033.444378 eV Total energy + Delta-G solvation = -3995.271867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.99734 -40.63966 -37.74746 -36.36541 -33.88439 -33.28520 -31.41637 -30.88089 -30.70551 -29.80094 -27.85910 -27.00645 -26.21896 -25.37213 -23.32856 -22.97297 -21.18899 -20.99386 -20.14816 -19.75857 -19.33040 -18.83173 -17.37021 -16.92848 -15.73124 -15.51310 -15.29150 -15.00657 -14.98415 -14.47788 -14.03080 -13.77529 -13.63737 -13.30596 -13.07641 -12.83351 -12.63367 -12.54285 -12.35991 -12.23577 -11.99754 -11.92665 -11.83910 -11.74356 -11.59266 -11.52423 -11.27322 -11.03879 -10.91192 -10.74624 -10.47089 -10.31561 -10.25648 -10.01004 -9.92309 -9.80543 -9.68430 -9.49482 -9.12117 -8.81636 -8.40225 -8.24030 -7.53345 -7.06445 -6.04243 -3.41143 2.12986 3.13129 3.18477 3.20695 3.31311 3.36109 3.80372 4.14756 4.16456 4.92871 4.95108 5.05967 5.13362 5.18614 5.20789 5.33024 5.37576 5.50355 5.55211 5.71338 5.73837 5.75593 5.79938 5.86160 5.87201 5.96893 6.01220 6.01774 6.07832 6.09799 6.12720 6.18847 6.22884 6.24369 6.30554 6.38894 6.43127 6.50876 6.53438 6.58628 6.68986 6.78638 6.83353 6.90001 7.20619 7.34690 7.38218 7.49393 7.56880 7.69756 7.97895 8.50844 8.81432 8.89341 9.09192 9.46248 10.18389 10.99327 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.007344 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.059647 B = 3811.486776 C = 4278.219408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.159 4.159 4 C 0.086 3.914 5 N -0.244 5.244 6 N -0.285 5.285 7 C -0.017 4.017 8 C -0.183 4.183 9 C -0.001 4.001 10 C 0.585 3.415 11 O -0.559 6.559 12 N -0.690 5.690 13 C 0.159 3.841 14 H 0.061 0.939 15 C -0.127 4.127 16 C -0.119 4.119 17 H 0.075 0.925 18 C -0.126 4.126 19 C 0.151 3.849 20 H 0.067 0.933 21 C -0.143 4.143 22 N -0.598 5.598 23 C -0.278 4.278 24 H 0.084 0.916 25 C 0.010 3.990 26 N -0.879 5.879 27 Si 0.869 3.131 28 H -0.273 1.273 29 H -0.260 1.260 30 H -0.290 1.290 31 C 0.147 3.853 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.175 0.825 42 H 0.150 0.850 43 H 0.437 0.563 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.261 0.739 51 H 0.077 0.923 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 6.044 -4.060 8.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.216 4.216 4 C -0.033 4.033 5 N -0.032 5.032 6 N -0.118 5.118 7 C -0.193 4.193 8 C -0.212 4.212 9 C -0.129 4.129 10 C 0.371 3.629 11 O -0.438 6.438 12 N -0.360 5.360 13 C 0.054 3.946 14 H 0.079 0.921 15 C -0.165 4.165 16 C -0.139 4.139 17 H 0.094 0.906 18 C -0.164 4.164 19 C 0.043 3.957 20 H 0.085 0.915 21 C -0.183 4.183 22 N -0.325 5.325 23 C -0.405 4.405 24 H 0.102 0.898 25 C -0.192 4.192 26 N -0.521 5.521 27 Si 0.698 3.302 28 H -0.198 1.198 29 H -0.185 1.185 30 H -0.217 1.217 31 C 0.023 3.977 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.163 0.837 41 H 0.192 0.808 42 H 0.168 0.832 43 H 0.296 0.704 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.072 0.928 51 H 0.094 0.906 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.883 5.674 -4.578 8.260 hybrid contribution 0.130 -0.942 0.282 0.991 sum -3.753 4.732 -4.296 7.412 Atomic orbital electron populations 1.21762 0.93719 1.02341 1.02352 1.21539 0.96749 0.97085 0.97915 1.22138 1.01382 0.95397 1.02710 1.23263 0.74101 1.04165 1.01811 1.45495 1.06798 1.09628 1.41233 1.73050 1.06976 1.12529 1.19209 1.23289 0.92527 0.97543 1.05966 1.21868 0.96282 0.96629 1.06456 1.21527 0.90690 0.93183 1.07535 1.16995 0.82567 0.85323 0.78047 1.90701 1.50544 1.40627 1.61974 1.47862 1.21315 1.13276 1.53537 1.20659 0.93938 0.84686 0.95328 0.92079 1.22113 1.00997 0.97823 0.95589 1.22812 0.96037 0.98569 0.96437 0.90625 1.22956 0.96294 0.98887 0.98312 1.21609 0.95244 0.87030 0.91795 0.91452 1.22563 0.94998 1.00311 1.00443 1.44993 1.03674 1.09635 1.74232 1.19085 0.93522 0.90528 1.37409 0.89835 1.24944 0.95866 0.97428 1.00913 1.69934 1.04561 1.29018 1.48612 0.86990 0.78785 0.84165 0.80309 1.19832 1.18549 1.21685 1.22086 0.85890 0.89465 1.00257 0.91710 0.92086 0.92378 0.90871 0.92571 0.92510 0.91205 0.88974 0.83666 0.80817 0.83197 0.70404 0.92423 0.90510 0.92130 0.92078 0.92101 0.91477 0.92807 0.90559 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 37.16 0.34 -1.59 16 2 C -0.11 -1.83 3.13 -90.62 -0.28 -2.12 16 3 C -0.16 -2.55 7.62 37.16 0.28 -2.27 16 4 C 0.09 1.69 3.00 -4.04 -0.01 1.68 16 5 N -0.24 -5.10 3.24 -57.14 -0.19 -5.28 16 6 N -0.28 -6.00 11.90 30.59 0.36 -5.63 16 7 C -0.02 -0.33 12.03 -17.43 -0.21 -0.54 16 8 C -0.18 -3.68 10.94 -38.99 -0.43 -4.10 16 9 C 0.00 -0.02 5.62 -82.06 -0.46 -0.48 16 10 C 0.59 12.61 3.71 -12.64 -0.05 12.57 16 11 O -0.56 -12.81 15.41 5.25 0.08 -12.73 16 12 N -0.69 -13.69 0.69 -54.96 -0.04 -13.72 16 13 C 0.16 2.79 2.39 -67.92 -0.16 2.63 16 14 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.13 -2.21 5.13 -26.21 -0.13 -2.35 16 16 C -0.12 -2.19 4.33 -87.92 -0.38 -2.57 16 17 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 18 C -0.13 -2.06 6.18 -24.29 -0.15 -2.21 16 19 C 0.15 2.67 4.30 -65.61 -0.28 2.38 16 20 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 21 C -0.14 -2.23 5.41 -26.28 -0.14 -2.38 16 22 N -0.60 -12.82 1.76 -161.37 -0.28 -13.11 16 23 C -0.28 -6.43 7.45 -15.06 -0.11 -6.55 16 24 H 0.08 1.89 7.83 -52.49 -0.41 1.48 16 25 C 0.01 0.25 3.72 -17.43 -0.06 0.18 16 26 N -0.88 -22.59 10.39 55.49 0.58 -22.02 16 27 Si 0.87 19.59 25.38 -169.99 -4.31 15.27 16 28 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 29 H -0.26 -5.98 6.58 56.52 0.37 -5.61 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 31 C 0.15 3.28 3.90 -2.83 -0.01 3.27 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.02 5.91 -51.93 -0.31 0.71 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.15 5.97 -51.93 -0.31 0.84 16 39 H 0.09 1.89 3.88 -51.93 -0.20 1.69 16 40 H 0.15 3.00 2.28 -51.93 -0.12 2.88 16 41 H 0.17 2.60 8.06 -52.49 -0.42 2.17 16 42 H 0.15 2.74 8.06 -52.49 -0.42 2.32 16 43 H 0.44 8.95 1.38 -40.82 -0.06 8.89 16 44 H 0.06 0.86 7.97 -51.93 -0.41 0.44 16 45 H 0.08 1.51 6.42 -51.93 -0.33 1.17 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 0.85 7.75 -51.93 -0.40 0.44 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 50 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 51 H 0.08 1.84 3.42 -58.41 -0.20 1.64 16 52 H 0.04 1.05 7.22 -51.93 -0.37 0.68 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -27.42 361.47 -8.39 -35.81 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -7.78 Total: 20.40 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.25 Total: -4.43 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.43 Total: -59.76 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.31 Total: 15.27 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.42 -8.39 -35.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047080065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.857 kcal (2) G-P(sol) polarization free energy of solvation -27.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds