Wall clock time and date at job start Wed Apr 1 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 C 1.52998 * 109.46805 * 119.99904 * 2 1 3 5 5 N 1.46503 * 109.46803 * 174.99681 * 4 2 1 6 6 C 1.34263 * 125.75136 * 124.99711 * 5 4 2 7 7 C 1.38047 * 107.41465 * 180.02562 * 6 5 4 8 8 C 1.47432 * 126.41118 * 180.02562 * 7 6 5 9 9 O 1.21606 * 120.00002 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00216 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.31863 * 34.99773 * 11 10 8 13 13 C 1.53027 * 109.32598 * 154.64536 * 11 10 8 14 14 C 1.53934 * 108.84301 * 175.84935 * 13 11 10 15 15 H 1.09003 * 113.03328 * 167.93304 * 14 13 11 16 16 C 1.55425 * 106.26291 * 293.57028 * 14 13 11 17 17 C 1.55178 * 100.35290 * 73.44415 * 16 14 13 18 18 H 1.08997 * 113.05104 * 162.98607 * 17 16 14 19 19 C 1.52982 * 109.32023 * 275.35895 * 11 10 8 20 20 N 1.47786 * 104.25305 * 40.54738 * 17 16 14 21 21 C 1.36943 * 125.85826 * 153.53972 * 20 17 16 22 22 H 1.08002 * 119.99115 * 0.02562 * 21 20 17 23 23 C 1.38805 * 120.00510 * 180.02562 * 21 20 17 24 24 N 1.31621 * 119.99591 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00096 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47160 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47061 * 119.99974 * 25 23 21 28 28 H 1.48502 * 109.46907 * 239.99554 * 25 23 21 29 29 C 1.47081 * 108.29056 * 333.54259 * 20 17 16 30 30 C 1.41288 * 107.17204 * 0.02562 * 7 6 5 31 31 N 1.30448 * 108.02410 * 0.26471 * 30 7 6 32 32 H 1.09002 * 109.46949 * 300.00046 * 1 2 3 33 33 H 1.09001 * 109.47415 * 59.99896 * 1 2 3 34 34 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46949 * 239.99954 * 2 1 3 36 36 H 1.08995 * 109.47051 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47047 * 300.00329 * 3 2 1 38 38 H 1.08997 * 109.47041 * 59.99683 * 3 2 1 39 39 H 1.08998 * 109.47076 * 55.00297 * 4 2 1 40 40 H 1.09003 * 109.47445 * 294.99668 * 4 2 1 41 41 H 1.08003 * 126.29219 * 0.02562 * 6 5 4 42 42 H 0.97001 * 120.00000 * 0.02562 * 10 8 7 43 43 H 1.09007 * 109.57413 * 295.47963 * 13 11 10 44 44 H 1.08999 * 109.58116 * 55.87332 * 13 11 10 45 45 H 1.09000 * 111.23910 * 315.66777 * 16 14 13 46 46 H 1.09001 * 111.24047 * 191.21641 * 16 14 13 47 47 H 1.08997 * 109.53599 * 304.52294 * 19 11 10 48 48 H 1.09007 * 109.53812 * 64.75434 * 19 11 10 49 49 H 0.97006 * 119.99962 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.97934 * 120.45451 * 29 20 17 51 51 H 1.09002 * 109.97820 * 241.73964 * 29 20 17 52 52 H 1.08002 * 125.98501 * 179.97438 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1905 6 6 4.3559 -0.3963 2.1313 7 6 5.6324 -0.6838 1.6910 8 6 6.8901 -0.3906 2.4022 9 8 6.8616 0.1577 3.4872 10 7 8.0715 -0.7303 1.8496 11 6 9.3214 -0.4395 2.5565 12 1 9.1638 -0.5525 3.6290 13 6 10.4028 -1.4200 2.0973 14 6 11.7356 -1.0398 2.7671 15 1 12.5021 -1.8070 2.6576 16 6 12.1390 0.3418 2.1804 17 6 11.1203 1.2609 2.9054 18 1 11.3988 2.3142 2.8748 19 6 9.7499 0.9981 2.2564 20 7 11.0684 0.7304 4.2838 21 6 10.7435 1.4443 5.4064 22 1 10.4952 2.4924 5.3266 23 6 10.7334 0.8211 6.6466 24 7 11.0356 -0.4563 6.7436 25 14 10.2896 1.7948 8.1777 26 1 9.9922 3.2003 7.8016 27 1 9.0947 1.1903 8.8196 28 1 11.4295 1.7680 9.1291 29 6 11.4256 -0.6958 4.2433 30 6 5.5077 -1.3115 0.4314 31 7 4.2380 -1.3856 0.1413 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6767 1.9563 0.8899 39 1 1.6053 -1.7198 1.2951 40 1 1.7516 -0.1583 2.1370 41 1 4.0940 0.0859 3.0615 42 1 8.0943 -1.1673 0.9839 43 1 10.1257 -2.4328 2.3902 44 1 10.5077 -1.3670 1.0136 45 1 11.9962 0.3690 1.1002 46 1 13.1637 0.6003 2.4476 47 1 9.8244 1.1387 1.1781 48 1 9.0142 1.6907 2.6654 49 1 11.0282 -0.8920 7.6103 50 1 12.3056 -0.8770 4.8606 51 1 10.5903 -1.2991 4.5988 52 1 6.3213 -1.6636 -0.1855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047171613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:28 Heat of formation + Delta-G solvation = 61.569933 kcal Electronic energy + Delta-G solvation = -31209.056393 eV Core-core repulsion = 27210.598148 eV Total energy + Delta-G solvation = -3998.458245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.47293 -39.82649 -38.23238 -36.77560 -34.38114 -32.79803 -32.29233 -30.60769 -30.48198 -29.36349 -28.21157 -27.62411 -26.64892 -25.22772 -23.14413 -22.99897 -21.86395 -20.94448 -20.43702 -19.63663 -19.32211 -18.64123 -17.74096 -16.90636 -16.18971 -15.83572 -15.70164 -15.00442 -14.83294 -14.52410 -14.41519 -14.26980 -13.83608 -13.59927 -13.43895 -13.27421 -12.88552 -12.82056 -12.69531 -12.62666 -12.42381 -11.92184 -11.74235 -11.70036 -11.62915 -11.49912 -11.46652 -11.37467 -11.15157 -10.94883 -10.66178 -10.60853 -10.42574 -9.87907 -9.77094 -9.68301 -9.64323 -9.58645 -9.32391 -9.20622 -8.74519 -8.47172 -8.36422 -6.69574 -5.57034 -2.88779 1.54802 2.17056 2.19273 3.50944 3.56645 3.58677 3.66998 3.82185 4.05250 4.32475 4.47991 4.61484 4.63404 4.72958 4.83032 5.00046 5.11746 5.19071 5.22098 5.32560 5.32937 5.34175 5.40543 5.46557 5.49592 5.62019 5.65281 5.71347 5.77037 5.81200 5.86793 5.97611 5.98682 6.13027 6.17140 6.19802 6.22775 6.32057 6.32963 6.65418 6.70248 6.70986 6.79970 6.97966 7.02061 7.08853 7.21696 7.43410 7.69795 7.71077 7.95232 8.04676 8.38586 8.79263 9.36185 9.96619 10.62701 11.55097 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002658 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.871734 B =10530.615160 C =11800.654138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.134 3.866 5 N -0.360 5.360 6 C 0.123 3.877 7 C -0.284 4.284 8 C 0.585 3.415 9 O -0.533 6.533 10 N -0.724 5.724 11 C 0.149 3.851 12 H 0.115 0.885 13 C -0.112 4.112 14 C -0.119 4.119 15 H 0.081 0.919 16 C -0.127 4.127 17 C 0.157 3.843 18 H 0.064 0.936 19 C -0.135 4.135 20 N -0.595 5.595 21 C -0.217 4.217 22 H 0.076 0.924 23 C -0.008 4.008 24 N -0.923 5.923 25 Si 0.909 3.091 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 C 0.181 3.819 30 C 0.078 3.922 31 N -0.298 5.298 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.186 0.814 42 H 0.388 0.612 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.042 0.958 48 H 0.058 0.942 49 H 0.249 0.751 50 H 0.043 0.957 51 H 0.046 0.954 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.629 -2.493 -17.107 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.013 3.987 5 N -0.139 5.139 6 C -0.028 4.028 7 C -0.299 4.299 8 C 0.371 3.629 9 O -0.410 6.410 10 N -0.374 5.374 11 C 0.046 3.954 12 H 0.133 0.867 13 C -0.150 4.150 14 C -0.139 4.139 15 H 0.100 0.900 16 C -0.166 4.166 17 C 0.048 3.952 18 H 0.082 0.918 19 C -0.177 4.177 20 N -0.320 5.320 21 C -0.345 4.345 22 H 0.094 0.906 23 C -0.204 4.204 24 N -0.571 5.571 25 Si 0.740 3.260 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.221 1.221 29 C 0.056 3.944 30 C -0.110 4.110 31 N -0.118 5.118 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.203 0.797 42 H 0.221 0.779 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.704 -2.505 -16.896 23.891 hybrid contribution 0.269 0.459 1.005 1.137 sum -16.435 -2.046 -15.891 22.953 Atomic orbital electron populations 1.21792 0.93822 1.02226 1.02537 1.21421 0.96225 0.97001 0.98106 1.21843 1.01552 0.95140 1.02091 1.21971 0.74094 1.02402 1.00265 1.48482 1.06719 1.44668 1.14024 1.22994 0.89105 0.95929 0.94776 1.20439 0.93983 1.16191 0.99281 1.17242 0.82428 0.78505 0.84752 1.90872 1.87190 1.42278 1.20667 1.45978 1.06219 1.62244 1.22922 1.21157 0.80788 0.93941 0.99483 0.86736 1.21963 0.95569 0.98498 0.98985 1.22834 0.95198 0.96492 0.99367 0.90041 1.22970 0.99298 0.96301 0.97999 1.21522 0.91561 0.96015 0.86078 0.91776 1.22614 1.00339 0.96520 0.98197 1.44619 1.80295 1.06284 1.00755 1.19056 1.38441 0.92960 0.84062 0.90598 1.24725 1.02114 0.96128 0.97436 1.69956 1.55337 1.09042 1.22813 0.86078 0.77476 0.78984 0.83472 1.20622 1.21886 1.22061 1.21298 0.99475 0.85210 0.88411 1.24024 0.94505 0.97321 0.95137 1.77074 1.04320 1.20461 1.09974 0.92278 0.91856 0.92253 0.89486 0.92533 0.92218 0.92492 0.89393 0.88308 0.79717 0.77950 0.92213 0.92813 0.92246 0.91958 0.93898 0.92285 0.94046 0.93839 0.93574 0.79622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.11 -0.71 2.99 -90.62 -0.27 -0.99 16 3 C -0.15 -1.10 9.08 37.16 0.34 -0.77 16 4 C 0.13 0.94 5.88 -4.04 -0.02 0.91 16 5 N -0.36 -3.78 3.10 -60.80 -0.19 -3.97 16 6 C 0.12 1.50 11.25 -16.56 -0.19 1.31 16 7 C -0.28 -3.95 6.13 -105.06 -0.64 -4.59 16 8 C 0.58 10.30 7.77 -12.52 -0.10 10.20 16 9 O -0.53 -12.15 16.56 5.27 0.09 -12.06 16 10 N -0.72 -11.34 5.06 -54.87 -0.28 -11.62 16 11 C 0.15 2.81 2.08 -67.92 -0.14 2.66 16 12 H 0.11 2.83 5.37 -51.93 -0.28 2.55 16 13 C -0.11 -1.81 4.95 -26.23 -0.13 -1.93 16 14 C -0.12 -2.16 4.34 -87.95 -0.38 -2.54 16 15 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 16 C -0.13 -2.20 6.18 -24.29 -0.15 -2.35 16 17 C 0.16 3.24 4.30 -65.61 -0.28 2.96 16 18 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 19 C -0.14 -2.59 5.27 -26.28 -0.14 -2.73 16 20 N -0.60 -15.13 2.43 -161.36 -0.39 -15.52 16 21 C -0.22 -6.20 10.29 -15.06 -0.16 -6.36 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 24 N -0.92 -27.84 10.35 55.49 0.57 -27.26 16 25 Si 0.91 23.28 29.55 -169.99 -5.02 18.25 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 C 0.18 4.36 4.10 -2.83 -0.01 4.35 16 30 C 0.08 0.89 11.50 -16.98 -0.20 0.70 16 31 N -0.30 -3.53 12.23 30.86 0.38 -3.15 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.70 8.03 -51.93 -0.42 0.29 16 36 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.51 8.06 -51.93 -0.42 0.09 16 41 H 0.19 2.01 8.06 -52.48 -0.42 1.58 16 42 H 0.39 4.57 7.55 -40.82 -0.31 4.27 16 43 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 44 H 0.05 0.72 7.97 -51.93 -0.41 0.30 16 45 H 0.06 0.87 7.74 -51.93 -0.40 0.47 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.04 0.70 8.00 -51.93 -0.42 0.29 16 48 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 49 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.04 1.18 7.40 -51.93 -0.38 0.79 16 51 H 0.05 1.25 6.16 -51.93 -0.32 0.93 16 52 H 0.19 1.53 7.50 -52.49 -0.39 1.13 16 LS Contribution 406.68 15.07 6.13 6.13 Total: -1.00 -35.25 406.68 -9.71 -44.97 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.77 Total: 4.09 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.22 Total: 0.15 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.09 Total: -61.52 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.25 -9.71 -44.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047171613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.536 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds