Wall clock time and date at job start Wed Apr 1 2020 05:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 C 1.52998 * 109.46805 * 119.99904 * 2 1 3 5 5 N 1.46503 * 109.46803 * 174.99681 * 4 2 1 6 6 C 1.34263 * 125.75136 * 124.99711 * 5 4 2 7 7 C 1.38047 * 107.41465 * 180.02562 * 6 5 4 8 8 C 1.47432 * 126.41118 * 180.02562 * 7 6 5 9 9 O 1.21606 * 120.00002 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00216 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.31863 * 34.99773 * 11 10 8 13 13 C 1.53027 * 109.32598 * 154.64536 * 11 10 8 14 14 C 1.53934 * 108.84301 * 175.84935 * 13 11 10 15 15 H 1.09003 * 113.03328 * 167.93304 * 14 13 11 16 16 C 1.55425 * 106.26291 * 293.57028 * 14 13 11 17 17 C 1.55178 * 100.35290 * 73.44415 * 16 14 13 18 18 H 1.08997 * 113.05104 * 162.98607 * 17 16 14 19 19 C 1.52982 * 109.32023 * 275.35895 * 11 10 8 20 20 N 1.47786 * 104.25305 * 40.54738 * 17 16 14 21 21 C 1.36943 * 125.85826 * 153.53972 * 20 17 16 22 22 H 1.08002 * 119.99115 * 0.02562 * 21 20 17 23 23 C 1.38805 * 120.00510 * 180.02562 * 21 20 17 24 24 N 1.31621 * 119.99591 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00096 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47160 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47061 * 119.99974 * 25 23 21 28 28 H 1.48502 * 109.46907 * 239.99554 * 25 23 21 29 29 C 1.47081 * 108.29056 * 333.54259 * 20 17 16 30 30 C 1.41288 * 107.17204 * 0.02562 * 7 6 5 31 31 N 1.30448 * 108.02410 * 0.26471 * 30 7 6 32 32 H 1.09002 * 109.46949 * 300.00046 * 1 2 3 33 33 H 1.09001 * 109.47415 * 59.99896 * 1 2 3 34 34 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46949 * 239.99954 * 2 1 3 36 36 H 1.08995 * 109.47051 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47047 * 300.00329 * 3 2 1 38 38 H 1.08997 * 109.47041 * 59.99683 * 3 2 1 39 39 H 1.08998 * 109.47076 * 55.00297 * 4 2 1 40 40 H 1.09003 * 109.47445 * 294.99668 * 4 2 1 41 41 H 1.08003 * 126.29219 * 0.02562 * 6 5 4 42 42 H 0.97001 * 120.00000 * 0.02562 * 10 8 7 43 43 H 1.09007 * 109.57413 * 295.47963 * 13 11 10 44 44 H 1.08999 * 109.58116 * 55.87332 * 13 11 10 45 45 H 1.09000 * 111.23910 * 315.66777 * 16 14 13 46 46 H 1.09001 * 111.24047 * 191.21641 * 16 14 13 47 47 H 1.08997 * 109.53599 * 304.52294 * 19 11 10 48 48 H 1.09007 * 109.53812 * 64.75434 * 19 11 10 49 49 H 0.97006 * 119.99962 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.97934 * 120.45451 * 29 20 17 51 51 H 1.09002 * 109.97820 * 241.73964 * 29 20 17 52 52 H 1.08002 * 125.98501 * 179.97438 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1905 6 6 4.3559 -0.3963 2.1313 7 6 5.6324 -0.6838 1.6910 8 6 6.8901 -0.3906 2.4022 9 8 6.8616 0.1577 3.4872 10 7 8.0715 -0.7303 1.8496 11 6 9.3214 -0.4395 2.5565 12 1 9.1638 -0.5525 3.6290 13 6 10.4028 -1.4200 2.0973 14 6 11.7356 -1.0398 2.7671 15 1 12.5021 -1.8070 2.6576 16 6 12.1390 0.3418 2.1804 17 6 11.1203 1.2609 2.9054 18 1 11.3988 2.3142 2.8748 19 6 9.7499 0.9981 2.2564 20 7 11.0684 0.7304 4.2838 21 6 10.7435 1.4443 5.4064 22 1 10.4952 2.4924 5.3266 23 6 10.7334 0.8211 6.6466 24 7 11.0356 -0.4563 6.7436 25 14 10.2896 1.7948 8.1777 26 1 9.9922 3.2003 7.8016 27 1 9.0947 1.1903 8.8196 28 1 11.4295 1.7680 9.1291 29 6 11.4256 -0.6958 4.2433 30 6 5.5077 -1.3115 0.4314 31 7 4.2380 -1.3856 0.1413 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6767 1.9563 0.8899 39 1 1.6053 -1.7198 1.2951 40 1 1.7516 -0.1583 2.1370 41 1 4.0940 0.0859 3.0615 42 1 8.0943 -1.1673 0.9839 43 1 10.1257 -2.4328 2.3902 44 1 10.5077 -1.3670 1.0136 45 1 11.9962 0.3690 1.1002 46 1 13.1637 0.6003 2.4476 47 1 9.8244 1.1387 1.1781 48 1 9.0142 1.6907 2.6654 49 1 11.0282 -0.8920 7.6103 50 1 12.3056 -0.8770 4.8606 51 1 10.5903 -1.2991 4.5988 52 1 6.3213 -1.6636 -0.1855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047171613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:25 Heat of formation + Delta-G solvation = 38.553071 kcal Electronic energy + Delta-G solvation = -31210.054479 eV Core-core repulsion = 27210.598148 eV Total energy + Delta-G solvation = -3999.456331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -42.41531 -41.35304 -39.69701 -37.39351 -36.01918 -34.66102 -33.17447 -32.31883 -31.69221 -30.91553 -29.71690 -28.13553 -27.41120 -27.16269 -24.89732 -24.27630 -22.79419 -22.10813 -21.40563 -21.16555 -20.67117 -20.03748 -18.95668 -18.74176 -17.31666 -17.10413 -16.70895 -16.53383 -16.14210 -15.67064 -15.61409 -15.58940 -15.28321 -15.09361 -14.46997 -14.34932 -14.09098 -13.92728 -13.76972 -13.72401 -13.42947 -13.29795 -13.20403 -13.18050 -12.98752 -12.94780 -12.61214 -12.48196 -12.33356 -12.14861 -12.07601 -12.00799 -11.84559 -11.64260 -11.60536 -11.31465 -11.11786 -10.94820 -10.70575 -10.65197 -10.54097 -10.00182 -9.58063 -8.78830 -7.80112 -5.11425 0.54053 1.20488 1.37442 1.40002 1.43404 1.51814 2.40379 2.51230 2.55095 3.37202 3.38867 3.70353 3.76391 3.79739 3.84064 3.87630 3.97333 4.06216 4.13013 4.19348 4.24356 4.43134 4.43525 4.49067 4.54817 4.58152 4.62528 4.65227 4.71965 4.75062 4.81538 4.85290 4.88366 4.88950 4.96836 5.14757 5.15750 5.24433 5.27689 5.35558 5.36201 5.39382 5.45042 5.51434 5.53073 5.55172 5.72841 5.81482 5.86149 5.88911 6.26940 6.51614 6.79991 7.17656 7.49614 7.86452 8.50407 9.30117 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002658 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.871734 B =10530.615160 C =11800.654138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.147 4.147 4 C 0.122 3.878 5 N -0.350 5.350 6 C 0.123 3.877 7 C -0.309 4.309 8 C 0.582 3.418 9 O -0.599 6.599 10 N -0.707 5.707 11 C 0.157 3.843 12 H 0.046 0.954 13 C -0.101 4.101 14 C -0.107 4.107 15 H 0.110 0.890 16 C -0.109 4.109 17 C 0.140 3.860 18 H 0.062 0.938 19 C -0.123 4.123 20 N -0.614 5.614 21 C -0.224 4.224 22 H 0.071 0.929 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.967 3.033 26 H -0.270 1.270 27 H -0.299 1.299 28 H -0.287 1.287 29 C 0.190 3.810 30 C 0.089 3.911 31 N -0.310 5.310 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.192 0.808 42 H 0.412 0.588 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.062 0.938 47 H 0.087 0.913 48 H 0.017 0.983 49 H 0.242 0.758 50 H 0.001 0.999 51 H 0.003 0.997 52 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.402 -2.940 -20.737 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.204 4.204 4 C 0.003 3.997 5 N -0.128 5.128 6 C -0.030 4.030 7 C -0.325 4.325 8 C 0.371 3.629 9 O -0.481 6.481 10 N -0.357 5.357 11 C 0.052 3.948 12 H 0.064 0.936 13 C -0.139 4.139 14 C -0.127 4.127 15 H 0.128 0.872 16 C -0.147 4.147 17 C 0.033 3.967 18 H 0.080 0.920 19 C -0.164 4.164 20 N -0.338 5.338 21 C -0.354 4.354 22 H 0.089 0.911 23 C -0.262 4.262 24 N -0.599 5.599 25 Si 0.797 3.203 26 H -0.194 1.194 27 H -0.227 1.227 28 H -0.214 1.214 29 C 0.065 3.935 30 C -0.099 4.099 31 N -0.130 5.130 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.209 0.791 42 H 0.249 0.751 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.105 0.895 48 H 0.036 0.964 49 H 0.051 0.949 50 H 0.019 0.981 51 H 0.021 0.979 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -17.491 -2.959 -20.629 27.208 hybrid contribution 0.393 0.646 2.106 2.238 sum -17.098 -2.313 -18.523 25.314 Atomic orbital electron populations 1.21758 0.91999 1.02970 1.03145 1.21347 0.97567 0.95980 0.97117 1.21828 0.99791 0.96050 1.02776 1.22381 0.72094 1.03755 1.01488 1.48753 1.07769 1.43215 1.13020 1.23168 0.89253 0.95338 0.95210 1.20199 0.92746 1.18823 1.00688 1.17788 0.83904 0.77237 0.84012 1.90839 1.88127 1.45446 1.23698 1.45701 1.04812 1.61675 1.23542 1.20783 0.82905 0.94832 0.96265 0.93620 1.21911 0.92830 0.97517 1.01663 1.22798 0.97283 0.98057 0.94553 0.87173 1.22927 0.97898 0.93762 1.00135 1.21884 0.93789 0.96794 0.84207 0.92013 1.22447 0.97998 0.95728 1.00221 1.44857 1.79924 1.07011 1.02051 1.19343 1.37259 0.93096 0.85680 0.91135 1.25494 1.03225 0.97192 1.00241 1.70180 1.56824 1.10288 1.22651 0.85156 0.76807 0.78192 0.80181 1.19410 1.22707 1.21432 1.21035 0.95843 0.84236 0.92419 1.24453 0.95222 0.96089 0.94117 1.77062 1.04532 1.20867 1.10524 0.91363 0.91585 0.91459 0.90960 0.95120 0.91677 0.91735 0.87972 0.86298 0.79139 0.75074 0.91804 0.87552 0.87400 0.91954 0.89503 0.96422 0.94867 0.98059 0.97904 0.76419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.19 71.98 0.66 -0.32 16 2 C -0.10 -1.15 2.99 -10.79 -0.03 -1.19 16 3 C -0.15 -2.01 9.08 71.98 0.65 -1.35 16 4 C 0.12 1.48 5.88 86.38 0.51 1.99 16 5 N -0.35 -6.88 3.10 -346.29 -1.07 -7.96 16 6 C 0.12 2.98 11.25 84.28 0.95 3.92 16 7 C -0.31 -8.46 6.13 -20.15 -0.12 -8.58 16 8 C 0.58 20.97 7.77 86.67 0.67 21.65 16 9 O -0.60 -29.19 16.56 -4.05 -0.07 -29.25 16 10 N -0.71 -21.38 5.06 -445.78 -2.25 -23.64 16 11 C 0.16 5.84 2.08 44.99 0.09 5.93 16 12 H 0.05 2.40 5.37 -2.39 -0.01 2.39 16 13 C -0.10 -2.94 4.95 30.92 0.15 -2.79 16 14 C -0.11 -3.66 4.34 -9.06 -0.04 -3.70 16 15 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 16 C -0.11 -3.39 6.18 32.18 0.20 -3.20 16 17 C 0.14 5.71 4.30 45.79 0.20 5.91 16 18 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 19 C -0.12 -4.61 5.27 30.89 0.16 -4.45 16 20 N -0.61 -32.55 2.43 -664.44 -1.61 -34.17 16 21 C -0.22 -13.51 10.29 84.03 0.86 -12.64 16 22 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 23 C -0.07 -4.25 5.49 84.86 0.47 -3.79 16 24 N -0.95 -60.88 10.35 21.65 0.22 -60.66 16 25 Si 0.97 50.14 29.55 68.60 2.03 52.17 16 26 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 28 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 29 C 0.19 9.55 4.10 86.85 0.36 9.90 16 30 C 0.09 1.84 11.50 85.65 0.99 2.83 16 31 N -0.31 -6.75 12.23 -56.28 -0.69 -7.44 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.38 8.14 -2.39 -0.02 0.37 16 35 H 0.07 1.06 8.03 -2.39 -0.02 1.04 16 36 H 0.03 0.57 7.75 -2.39 -0.02 0.55 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.12 0.97 8.06 -2.39 -0.02 0.95 16 41 H 0.19 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.41 8.33 7.55 -92.71 -0.70 7.63 16 43 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.11 2.09 7.97 -2.39 -0.02 2.07 16 45 H 0.11 2.41 7.74 -2.39 -0.02 2.39 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.09 2.49 8.00 -2.39 -0.02 2.47 16 48 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.24 15.15 8.31 -92.70 -0.77 14.38 16 50 H 0.00 0.07 7.40 -2.39 -0.02 0.05 16 51 H 0.00 0.17 6.16 -2.39 -0.01 0.15 16 52 H 0.22 2.76 7.50 -2.91 -0.02 2.74 16 Total: -1.00 -86.67 406.68 3.49 -83.18 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.21 Total: 17.64 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.73 Total: 10.12 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -5.41 Total: -133.86 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.07 Total: -29.25 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -86.67 3.49 -83.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047171613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.736 kcal (2) G-P(sol) polarization free energy of solvation -86.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds