Wall clock time and date at job start Wed Apr 1 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46666 * 2 1 4 4 C 1.53001 * 109.47154 * 119.99570 * 2 1 3 5 5 N 1.46499 * 109.46898 * 65.00187 * 4 2 1 6 6 C 1.34265 * 125.75084 * 125.26488 * 5 4 2 7 7 C 1.38047 * 107.41417 * 180.14573 * 6 5 4 8 8 C 1.47420 * 126.41241 * 179.87177 * 7 6 5 9 9 O 1.21600 * 120.00275 * 4.04012 * 8 7 6 10 10 N 1.34785 * 119.99785 * 184.03720 * 8 7 6 11 11 C 1.46504 * 119.99729 * 184.23556 * 10 8 7 12 12 H 1.08995 * 109.32582 * 51.74532 * 11 10 8 13 13 C 1.54490 * 108.84754 * 292.71878 * 11 10 8 14 14 C 1.53970 * 108.07831 * 294.16303 * 13 11 10 15 15 H 1.09007 * 112.99135 * 169.19250 * 14 13 11 16 16 C 1.55429 * 107.19989 * 294.58015 * 14 13 11 17 17 C 1.55178 * 100.35004 * 73.66151 * 16 14 13 18 18 H 1.09004 * 113.04630 * 162.98499 * 17 16 14 19 19 C 1.52987 * 109.32388 * 171.39519 * 11 10 8 20 20 N 1.47787 * 104.25291 * 40.54624 * 17 16 14 21 21 C 1.36945 * 125.84982 * 153.50376 * 20 17 16 22 22 H 1.07993 * 119.99997 * 9.30034 * 21 20 17 23 23 C 1.38814 * 119.99379 * 189.30256 * 21 20 17 24 24 N 1.31610 * 120.00497 * 6.28750 * 23 21 20 25 25 Si 1.86800 * 119.99620 * 186.28977 * 23 21 20 26 26 H 1.48502 * 109.47316 * 89.99483 * 25 23 21 27 27 H 1.48504 * 109.47152 * 210.00146 * 25 23 21 28 28 H 1.48503 * 109.47288 * 329.99855 * 25 23 21 29 29 C 1.47075 * 108.29351 * 333.54073 * 20 17 16 30 30 C 1.41294 * 107.16758 * 359.60790 * 7 6 5 31 31 N 1.30443 * 108.02755 * 0.24415 * 30 7 6 32 32 H 1.08998 * 109.46521 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46737 * 300.00216 * 1 2 3 34 34 H 1.08993 * 109.47102 * 60.00110 * 1 2 3 35 35 H 1.08997 * 109.47173 * 240.00004 * 2 1 3 36 36 H 1.08998 * 109.47058 * 179.97438 * 3 2 1 37 37 H 1.09006 * 109.47386 * 299.99574 * 3 2 1 38 38 H 1.09001 * 109.47719 * 60.00386 * 3 2 1 39 39 H 1.08999 * 109.47427 * 305.00406 * 4 2 1 40 40 H 1.08997 * 109.47071 * 185.00252 * 4 2 1 41 41 H 1.08001 * 126.29284 * 359.97438 * 6 5 4 42 42 H 0.96998 * 119.99750 * 4.23902 * 10 8 7 43 43 H 1.09006 * 109.79897 * 174.68199 * 13 11 10 44 44 H 1.08999 * 110.10279 * 53.82192 * 13 11 10 45 45 H 1.08997 * 111.23260 * 191.43311 * 16 14 13 46 46 H 1.08995 * 111.23665 * 315.88658 * 16 14 13 47 47 H 1.09001 * 109.53217 * 305.28658 * 19 11 10 48 48 H 1.09001 * 109.53706 * 185.06141 * 19 11 10 49 49 H 0.97001 * 120.00475 * 184.84138 * 24 23 21 50 50 H 1.09005 * 109.97957 * 241.74202 * 29 20 17 51 51 H 1.08999 * 109.98141 * 120.45880 * 29 20 17 52 52 H 1.08000 * 125.98507 * 180.27479 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 -2.1327 1.1907 6 6 2.4865 -3.1801 1.2923 7 6 1.7252 -4.3265 1.1835 8 6 2.2204 -5.7140 1.2353 9 8 3.3953 -5.9323 1.4604 10 7 1.3709 -6.7408 1.0333 11 6 1.8424 -8.1205 1.1762 12 1 2.3392 -8.2339 2.1397 13 6 2.8543 -8.4215 0.0484 14 6 2.1006 -8.3799 -1.2935 15 1 2.7664 -8.3954 -2.1565 16 6 1.0821 -9.5540 -1.2852 17 6 0.0230 -8.9973 -0.2970 18 1 -0.9316 -9.5202 -0.3555 19 6 0.6475 -9.0734 1.1074 20 7 -0.0931 -7.5682 -0.6550 21 6 -1.1948 -6.7790 -0.4583 22 1 -2.0244 -7.1462 0.1276 23 6 -1.2452 -5.5071 -1.0121 24 7 -0.2926 -5.1058 -1.8267 25 14 -2.6653 -4.3652 -0.6011 26 1 -2.3214 -3.5594 0.5980 27 1 -2.9204 -3.4593 -1.7498 28 1 -3.8829 -5.1690 -0.3247 29 6 1.1771 -7.1391 -1.2597 30 6 0.3817 -3.9209 1.0194 31 7 0.3501 -2.6169 1.0250 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8901 38 1 1.6767 1.9564 0.8900 39 1 1.6054 -0.2617 2.1370 40 1 3.1263 -0.6442 1.2952 41 1 3.5566 -3.1341 1.4306 42 1 0.4475 -6.5661 0.7932 43 1 3.2861 -9.4117 0.1943 44 1 3.6462 -7.6725 0.0459 45 1 0.6538 -9.7121 -2.2749 46 1 1.5365 -10.4681 -0.9032 47 1 -0.0937 -8.7830 1.8520 48 1 0.9821 -10.0923 1.3028 49 1 -0.2900 -4.1941 -2.1582 50 1 1.6308 -6.3537 -0.6552 51 1 1.0036 -6.7763 -2.2728 52 1 -0.4700 -4.5759 0.9091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047171614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:35 Heat of formation + Delta-G solvation = 114.994234 kcal Electronic energy + Delta-G solvation = -33715.919113 eV Core-core repulsion = 29719.777519 eV Total energy + Delta-G solvation = -3996.141594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.97806 -40.26385 -37.51235 -36.25555 -33.64449 -33.08525 -31.71379 -30.70011 -30.41172 -29.50940 -27.80590 -27.06342 -26.15112 -25.18469 -23.12725 -22.60884 -21.20876 -20.81678 -19.93396 -19.62376 -19.05635 -18.56271 -17.54284 -16.76196 -15.65030 -15.32450 -15.09219 -14.97799 -14.79985 -14.49464 -13.99235 -13.88342 -13.51103 -13.20775 -13.14453 -12.68763 -12.55675 -12.38722 -12.29320 -12.26678 -12.09909 -12.00382 -11.76451 -11.62968 -11.56062 -11.38489 -11.36292 -10.92475 -10.82656 -10.79598 -10.63240 -10.43523 -10.09329 -10.06822 -9.76693 -9.64043 -9.52437 -9.31709 -8.97460 -8.83169 -8.70660 -8.08016 -7.29649 -6.86578 -5.78407 -3.25247 2.12853 2.79330 2.96627 3.34161 3.39753 3.45653 4.25664 4.35349 4.40054 4.58636 4.70034 4.94387 5.16326 5.23867 5.24466 5.31581 5.34866 5.38115 5.47698 5.52830 5.62578 5.70520 5.70612 5.83675 5.87144 5.89706 5.92986 6.00618 6.03554 6.07742 6.14870 6.17516 6.23628 6.27523 6.34095 6.36580 6.47390 6.58559 6.68781 6.70310 6.82639 6.92264 6.97636 7.03607 7.21581 7.35175 7.54569 7.63169 7.72916 7.86371 8.18403 8.19253 8.83866 9.08922 9.39889 9.65891 10.36888 11.20616 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.004687 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.333527 B = 5973.030844 C = 7269.696303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.107 4.107 3 C -0.144 4.144 4 C 0.139 3.861 5 N -0.369 5.369 6 C 0.107 3.893 7 C -0.273 4.273 8 C 0.584 3.416 9 O -0.586 6.586 10 N -0.692 5.692 11 C 0.164 3.836 12 H 0.057 0.943 13 C -0.124 4.124 14 C -0.119 4.119 15 H 0.071 0.929 16 C -0.126 4.126 17 C 0.150 3.850 18 H 0.066 0.934 19 C -0.141 4.141 20 N -0.593 5.593 21 C -0.262 4.262 22 H 0.081 0.919 23 C 0.005 3.995 24 N -0.885 5.885 25 Si 0.880 3.120 26 H -0.266 1.266 27 H -0.289 1.289 28 H -0.282 1.282 29 C 0.142 3.858 30 C 0.106 3.894 31 N -0.303 5.303 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.178 0.822 42 H 0.435 0.565 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.255 0.745 50 H 0.070 0.930 51 H 0.054 0.946 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 4.070 5.044 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.126 4.126 3 C -0.201 4.201 4 C 0.017 3.983 5 N -0.148 5.148 6 C -0.043 4.043 7 C -0.287 4.287 8 C 0.371 3.629 9 O -0.469 6.469 10 N -0.356 5.356 11 C 0.058 3.942 12 H 0.075 0.925 13 C -0.162 4.162 14 C -0.138 4.138 15 H 0.090 0.910 16 C -0.165 4.165 17 C 0.042 3.958 18 H 0.084 0.916 19 C -0.181 4.181 20 N -0.319 5.319 21 C -0.390 4.390 22 H 0.099 0.901 23 C -0.195 4.195 24 N -0.528 5.528 25 Si 0.708 3.292 26 H -0.192 1.192 27 H -0.215 1.215 28 H -0.207 1.207 29 C 0.018 3.982 30 C -0.081 4.081 31 N -0.123 5.123 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.195 0.805 42 H 0.290 0.710 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.072 0.928 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.760 5.328 4.991 8.716 hybrid contribution -0.585 0.001 -0.153 0.604 sum 4.176 5.330 4.838 8.322 Atomic orbital electron populations 1.22096 0.93744 1.05236 1.00620 1.21377 0.97940 0.95785 0.97486 1.21788 1.00747 0.95341 1.02272 1.21811 1.00124 0.76708 0.99636 1.48448 1.05425 1.05694 1.55249 1.22761 0.96989 0.86586 0.97982 1.20297 0.93711 0.93915 1.20800 1.17261 0.85363 0.84124 0.76116 1.90623 1.17214 1.86070 1.53034 1.47342 1.17430 1.03941 1.66900 1.20830 0.94041 0.82199 0.97103 0.92514 1.22337 0.98085 1.00720 0.95053 1.22791 0.96899 0.97979 0.96176 0.91038 1.22939 0.97330 0.96748 0.99439 1.21616 0.95571 0.87144 0.91456 0.91625 1.22516 0.97213 0.97773 1.00602 1.44932 1.11939 1.04340 1.70733 1.19146 0.96031 0.96031 1.27810 0.90147 1.24866 0.97887 0.98613 0.98135 1.69993 1.33011 1.17027 1.32810 0.86755 0.82193 0.81422 0.78782 1.19232 1.21474 1.20722 1.22137 0.83729 0.92957 0.99397 1.24634 0.97793 0.92086 0.93606 1.77027 0.97529 1.11913 1.25821 0.88799 0.93266 0.93379 0.90514 0.92621 0.92085 0.92490 0.89992 0.88947 0.80541 0.71037 0.92816 0.90654 0.92196 0.92315 0.92028 0.91858 0.93393 0.91197 0.92825 0.78669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.91 37.16 0.33 -1.92 16 2 C -0.11 -1.29 3.12 -90.62 -0.28 -1.57 16 3 C -0.14 -1.28 9.19 37.16 0.34 -0.94 16 4 C 0.14 1.65 5.95 -4.04 -0.02 1.62 16 5 N -0.37 -6.09 3.65 -60.81 -0.22 -6.32 16 6 C 0.11 1.88 11.25 -16.56 -0.19 1.69 16 7 C -0.27 -5.66 6.12 -105.07 -0.64 -6.30 16 8 C 0.58 12.79 5.95 -12.52 -0.07 12.71 16 9 O -0.59 -13.50 15.34 5.28 0.08 -13.42 16 10 N -0.69 -14.58 2.77 -54.13 -0.15 -14.73 16 11 C 0.16 3.08 2.78 -67.15 -0.19 2.89 16 12 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 13 C -0.12 -2.27 5.23 -25.44 -0.13 -2.40 16 14 C -0.12 -2.30 4.27 -87.92 -0.38 -2.67 16 15 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.13 -2.20 6.19 -24.29 -0.15 -2.35 16 17 C 0.15 2.83 4.30 -65.61 -0.28 2.55 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.14 -2.39 5.43 -26.28 -0.14 -2.53 16 20 N -0.59 -13.34 1.76 -161.37 -0.28 -13.63 16 21 C -0.26 -6.35 8.22 -15.05 -0.12 -6.47 16 22 H 0.08 1.91 7.84 -52.49 -0.41 1.50 16 23 C 0.01 0.12 3.42 -17.43 -0.06 0.06 16 24 N -0.89 -23.17 10.26 55.49 0.57 -22.60 16 25 Si 0.88 20.10 27.49 -169.99 -4.67 15.43 16 26 H -0.27 -5.95 6.62 56.52 0.37 -5.58 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 C 0.14 3.27 4.02 -2.83 -0.01 3.25 16 30 C 0.11 2.26 9.82 -16.98 -0.17 2.09 16 31 N -0.30 -6.02 9.52 30.86 0.29 -5.73 16 32 H 0.09 1.67 5.34 -51.93 -0.28 1.39 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 41 H 0.18 2.57 8.06 -52.49 -0.42 2.15 16 42 H 0.44 9.65 3.04 -40.82 -0.12 9.52 16 43 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 44 H 0.07 1.54 6.49 -51.93 -0.34 1.20 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.88 7.80 -51.93 -0.40 0.47 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 49 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 50 H 0.07 1.72 3.82 -58.41 -0.22 1.50 16 51 H 0.05 1.43 6.75 -51.93 -0.35 1.08 16 52 H 0.20 4.48 3.32 -52.49 -0.17 4.30 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -28.42 378.36 -9.06 -37.48 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -8.21 Total: 18.08 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.17 Total: -0.28 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: 0.21 Total: -63.00 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.42 -9.06 -37.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047171614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.477 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds