Wall clock time and date at job start Wed Apr 1 2020 04:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47385 * 2 1 4 4 C 1.52999 * 109.46926 * 185.00030 * 3 2 1 5 5 C 1.52998 * 109.47156 * 65.89581 * 4 3 2 6 6 N 1.46494 * 109.47001 * 65.00093 * 3 2 1 7 7 N 1.28449 * 125.19344 * 54.60195 * 6 3 2 8 8 C 1.30863 * 110.92580 * 179.97438 * 7 6 3 9 9 C 1.39668 * 107.86378 * 0.02562 * 8 7 6 10 10 C 1.36598 * 125.18740 * 234.29581 * 6 3 2 11 11 C 1.47164 * 126.88525 * 0.02562 * 10 6 3 12 12 O 1.21626 * 120.00250 * 7.42601 * 11 10 6 13 13 N 1.34778 * 120.00065 * 187.42645 * 11 10 6 14 14 C 1.46663 * 125.33989 * 177.33973 * 13 11 10 15 15 C 1.53727 * 107.94383 * 180.54651 * 14 13 11 16 16 H 1.09004 * 112.56102 * 139.72637 * 15 14 13 17 17 C 1.53698 * 109.34173 * 266.25310 * 15 14 13 18 18 N 1.46642 * 108.00709 * 127.55649 * 17 15 14 19 19 C 1.36934 * 125.32709 * 180.81793 * 18 17 15 20 20 H 1.07999 * 119.99511 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00136 * 0.02562 * 19 18 17 22 22 N 1.31620 * 120.00310 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99800 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47431 * 90.00324 * 23 21 19 25 25 H 1.48506 * 109.46876 * 210.00455 * 23 21 19 26 26 H 1.48503 * 109.47188 * 330.00080 * 23 21 19 27 27 C 1.46750 * 109.34066 * 0.83643 * 18 17 15 28 28 C 1.53934 * 106.72147 * 341.66073 * 27 18 17 29 29 H 1.08998 * 113.00642 * 150.83230 * 28 27 18 30 30 C 1.46777 * 125.33744 * 357.04190 * 13 11 10 31 31 H 1.08989 * 109.47443 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46630 * 300.00423 * 1 2 3 33 33 H 1.09004 * 109.46752 * 59.99737 * 1 2 3 34 34 H 1.09001 * 109.47192 * 119.99987 * 2 1 3 35 35 H 1.08998 * 109.47014 * 239.99957 * 2 1 3 36 36 H 1.09001 * 109.46925 * 304.99801 * 3 2 1 37 37 H 1.08997 * 109.46811 * 185.88987 * 4 3 2 38 38 H 1.08994 * 109.47461 * 305.89623 * 4 3 2 39 39 H 1.08999 * 109.47060 * 304.13862 * 5 4 3 40 40 H 1.08996 * 109.47584 * 64.14003 * 5 4 3 41 41 H 1.09007 * 109.47461 * 184.13800 * 5 4 3 42 42 H 1.07996 * 126.06458 * 179.97438 * 8 7 6 43 43 H 1.08000 * 127.32177 * 180.02562 * 9 8 7 44 44 H 1.09000 * 109.77463 * 300.17277 * 14 13 11 45 45 H 1.09001 * 109.76805 * 60.92893 * 14 13 11 46 46 H 1.08993 * 109.76216 * 247.19483 * 17 15 14 47 47 H 1.08997 * 109.75766 * 7.91952 * 17 15 14 48 48 H 0.96989 * 120.00107 * 179.97438 * 22 21 19 49 49 H 1.08999 * 110.01006 * 222.34126 * 27 18 17 50 50 H 1.09008 * 110.00504 * 100.97430 * 27 18 17 51 51 H 1.09008 * 110.02879 * 280.77266 * 30 13 11 52 52 H 1.08999 * 110.02952 * 42.18645 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4442 -0.1257 5 6 3.9642 0.8942 -1.4964 6 7 1.6525 2.0975 1.2518 7 7 1.9160 1.6580 2.4296 8 6 1.4399 2.4620 3.3458 9 6 0.8066 3.5242 2.6966 10 6 0.9610 3.2718 1.3445 11 6 0.4742 4.1006 0.2300 12 8 0.5575 3.6927 -0.9128 13 7 -0.0640 5.3115 0.4757 14 6 -0.5335 6.2542 -0.5450 15 6 -1.0563 7.5086 0.1734 16 1 -0.7784 8.4301 -0.3384 17 6 -2.5717 7.3754 0.3925 18 7 -2.8471 7.6140 1.8129 19 6 -4.0840 7.5664 2.3985 20 1 -4.1883 7.7576 3.4563 21 6 -5.2037 7.2723 1.6327 22 7 -5.0766 7.0387 0.3436 23 14 -6.8910 7.2080 2.4316 24 1 -7.5154 8.5544 2.3787 25 1 -7.7466 6.2366 1.7037 26 1 -6.7525 6.7819 3.8474 27 6 -1.5898 7.9123 2.5083 28 6 -0.4521 7.4091 1.6017 29 1 0.4700 7.9782 1.7196 30 6 -0.2778 5.8912 1.8071 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3632 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.6055 1.9816 -0.8419 37 1 3.9369 2.4634 -0.0208 38 1 3.9947 0.8182 0.6562 39 1 3.5302 -0.0966 -1.6309 40 1 3.5967 1.5608 -2.2766 41 1 5.0504 0.8265 -1.5585 42 1 1.5214 2.3275 4.4143 43 1 0.3073 4.3662 3.1526 44 1 0.2910 6.5239 -1.2051 45 1 -1.3368 5.7997 -1.1250 46 1 -3.0980 8.1126 -0.2138 47 1 -2.8970 6.3721 0.1175 48 1 -5.8589 6.8329 -0.1914 49 1 -1.5610 7.3929 3.4661 50 1 -1.4953 8.9871 2.6635 51 1 -1.1746 5.4674 2.2592 52 1 0.5873 5.6983 2.4416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048861745.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:08 Heat of formation + Delta-G solvation = 76.944035 kcal Electronic energy + Delta-G solvation = -32138.115454 eV Core-core repulsion = 28140.323880 eV Total energy + Delta-G solvation = -3997.791574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.60876 -40.07972 -38.13889 -37.05460 -35.03088 -32.46914 -32.06718 -31.49146 -31.25759 -29.74695 -29.50598 -26.55401 -25.75043 -25.60455 -23.81898 -23.08867 -22.32911 -21.80572 -20.64528 -20.10917 -19.36840 -19.00643 -17.30434 -16.81231 -16.53971 -16.20520 -15.63604 -15.28252 -15.03961 -14.75854 -14.61357 -14.30077 -14.10491 -13.78296 -13.61250 -13.43860 -13.22912 -12.87037 -12.77011 -12.56205 -12.37869 -12.16330 -12.07720 -11.87639 -11.69699 -11.52958 -11.44671 -11.27052 -11.13219 -10.92743 -10.87358 -10.83437 -10.64309 -10.46221 -10.12038 -10.10385 -9.84500 -9.77847 -9.66871 -9.16367 -8.95565 -8.63847 -8.41226 -6.87509 -5.75731 -3.09683 1.33620 2.32340 2.66444 3.19543 3.29813 3.37992 3.43227 3.45239 4.25950 4.41084 4.46686 4.56239 4.74704 4.77978 4.90775 4.98031 4.99000 5.06180 5.13249 5.20598 5.22925 5.42124 5.46630 5.47241 5.47901 5.53574 5.59632 5.60820 5.67377 5.69651 5.77662 5.78959 5.83068 5.87292 5.92708 5.94247 6.03649 6.12472 6.16093 6.22929 6.31182 6.44190 6.52636 6.53806 6.58993 6.76563 6.79702 7.51153 7.52808 7.61857 7.77909 8.06889 8.21086 8.22836 9.18266 9.78897 10.41877 11.35686 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.002961 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.933100 B = 9455.476696 C = 9740.429898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.132 3.868 4 C -0.129 4.129 5 C -0.151 4.151 6 N -0.247 5.247 7 N -0.277 5.277 8 C -0.010 4.010 9 C -0.199 4.199 10 C -0.030 4.030 11 C 0.601 3.399 12 O -0.550 6.550 13 N -0.588 5.588 14 C 0.123 3.877 15 C -0.123 4.123 16 H 0.092 0.908 17 C 0.184 3.816 18 N -0.602 5.602 19 C -0.231 4.231 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.145 3.855 28 C -0.112 4.112 29 H 0.091 0.909 30 C 0.099 3.901 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.137 0.863 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.184 0.816 43 H 0.173 0.827 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.253 0.747 49 H 0.039 0.961 50 H 0.021 0.979 51 H 0.085 0.915 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.345 -8.794 0.349 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C 0.032 3.968 4 C -0.167 4.167 5 C -0.208 4.208 6 N -0.035 5.035 7 N -0.109 5.109 8 C -0.185 4.185 9 C -0.227 4.227 10 C -0.158 4.158 11 C 0.389 3.611 12 O -0.430 6.430 13 N -0.319 5.319 14 C 0.001 3.999 15 C -0.143 4.143 16 H 0.111 0.889 17 C 0.059 3.941 18 N -0.329 5.329 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.018 3.982 28 C -0.132 4.132 29 H 0.110 0.890 30 C -0.023 4.023 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.201 0.799 43 H 0.190 0.810 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.039 0.961 51 H 0.103 0.897 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.803 -10.193 -0.625 20.524 hybrid contribution -1.476 0.794 0.655 1.800 sum 16.327 -9.399 0.030 18.839 Atomic orbital electron populations 1.21757 0.94949 1.01846 1.02519 1.21900 0.96983 0.94268 1.03548 1.22253 0.96499 0.95218 0.82799 1.21826 0.93367 1.02430 0.99087 1.21795 1.01590 1.01439 0.96011 1.45848 1.37245 1.14764 1.05680 1.73079 1.21910 1.25733 0.90189 1.23559 1.01994 0.93599 0.99389 1.22905 1.05914 1.02659 0.91265 1.21291 1.06397 0.92654 0.95503 1.16464 0.77989 0.79989 0.86614 1.90692 1.58688 1.71299 1.22322 1.47847 1.59178 1.15532 1.09327 1.21890 0.98784 0.88938 0.90270 1.23177 1.00216 0.96199 0.94695 0.88929 1.21126 0.86021 1.01109 0.85823 1.44206 1.01653 1.82808 1.04199 1.19019 0.82361 1.41453 0.93050 0.90340 1.24798 0.97963 1.01675 0.95815 1.69945 1.28389 1.53742 1.04682 0.86130 0.84058 0.77386 0.78236 1.21591 1.21709 1.20660 1.21172 0.85597 0.97077 0.94304 1.22984 0.99053 0.94275 0.96911 0.89040 1.22660 1.01750 0.93659 0.84236 0.92302 0.92925 0.92117 0.90515 0.89720 0.84563 0.91508 0.90767 0.91980 0.92039 0.92027 0.79923 0.81040 0.91996 0.90486 0.93677 0.93033 0.93691 0.94305 0.96149 0.89655 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.80 37.16 0.36 -1.47 16 2 C -0.13 -1.37 5.31 -26.73 -0.14 -1.51 16 3 C 0.13 1.62 2.40 -67.93 -0.16 1.46 16 4 C -0.13 -1.31 5.65 -26.73 -0.15 -1.46 16 5 C -0.15 -1.20 9.78 37.16 0.36 -0.84 16 6 N -0.25 -3.47 2.54 -50.69 -0.13 -3.60 16 7 N -0.28 -3.78 11.43 30.59 0.35 -3.43 16 8 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 9 C -0.20 -2.65 9.31 -38.98 -0.36 -3.02 16 10 C -0.03 -0.46 6.91 -82.06 -0.57 -1.03 16 11 C 0.60 10.21 7.81 -12.64 -0.10 10.12 16 12 O -0.55 -10.25 14.72 5.25 0.08 -10.17 16 13 N -0.59 -9.63 3.31 -173.53 -0.57 -10.20 16 14 C 0.12 2.04 6.23 -3.58 -0.02 2.02 16 15 C -0.12 -2.09 4.02 -88.60 -0.36 -2.45 16 16 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 17 C 0.18 4.18 4.75 -3.60 -0.02 4.16 16 18 N -0.60 -14.32 3.37 -171.92 -0.58 -14.90 16 19 C -0.23 -6.14 10.25 -15.06 -0.15 -6.29 16 20 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 22 N -0.92 -26.35 10.25 55.49 0.57 -25.78 16 23 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.15 2.68 6.37 -3.42 -0.02 2.66 16 28 C -0.11 -1.71 4.19 -88.25 -0.37 -2.08 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 C 0.10 1.48 4.45 -3.29 -0.01 1.47 16 31 H 0.06 0.60 8.14 -51.94 -0.42 0.18 16 32 H 0.05 0.75 7.75 -51.93 -0.40 0.34 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.83 7.96 -51.93 -0.41 0.42 16 35 H 0.08 0.72 6.30 -51.93 -0.33 0.39 16 36 H 0.14 1.92 5.34 -51.93 -0.28 1.65 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.43 6.32 -51.93 -0.33 0.11 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.17 2.06 4.82 -52.49 -0.25 1.80 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.42 7.44 -51.93 -0.39 1.04 16 46 H 0.05 1.15 7.46 -51.93 -0.39 0.77 16 47 H 0.05 1.34 6.50 -51.93 -0.34 1.00 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.04 0.69 7.95 -51.93 -0.41 0.27 16 50 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 51 H 0.09 1.48 7.50 -51.92 -0.39 1.09 16 52 H 0.08 0.99 5.51 -51.93 -0.29 0.70 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -31.18 397.71 -9.73 -40.92 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.40 Total: 3.38 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.02 Total: 1.13 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.36 Total: -57.92 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.18 -9.73 -40.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048861745.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.859 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds