Wall clock time and date at job start Wed Apr 1 2020 04:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47001 * 2 1 4 4 C 1.53003 * 109.47275 * 175.55303 * 3 2 1 5 5 C 1.53004 * 109.47000 * 294.04534 * 4 3 2 6 6 N 1.46499 * 109.47200 * 295.55366 * 3 2 1 7 7 C 1.35032 * 124.88504 * 274.99871 * 6 3 2 8 8 C 1.35362 * 107.23379 * 180.02562 * 7 6 3 9 9 C 1.41499 * 105.49974 * 0.26663 * 8 7 6 10 10 C 1.47712 * 126.52186 * 179.70298 * 9 8 7 11 11 O 1.21573 * 119.99702 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00522 * 179.97438 * 10 9 8 13 13 C 1.46665 * 125.34065 * 179.97438 * 12 10 9 14 14 C 1.53729 * 107.94312 * 180.54248 * 13 12 10 15 15 H 1.08999 * 112.55824 * 139.72574 * 14 13 12 16 16 C 1.53696 * 109.33998 * 266.24997 * 14 13 12 17 17 N 1.46637 * 108.00412 * 127.55833 * 16 14 13 18 18 C 1.36940 * 125.32646 * 180.81973 * 17 16 14 19 19 H 1.08002 * 119.99625 * 186.22226 * 18 17 16 20 20 C 1.38808 * 120.00285 * 6.21081 * 18 17 16 21 21 N 1.31622 * 119.99859 * 8.38566 * 20 18 17 22 22 Si 1.86794 * 120.00142 * 188.38393 * 20 18 17 23 23 H 1.48500 * 109.47267 * 94.98713 * 22 20 18 24 24 H 1.48506 * 109.47254 * 214.98228 * 22 20 18 25 25 H 1.48500 * 109.47252 * 334.98247 * 22 20 18 26 26 C 1.46745 * 109.34462 * 0.83662 * 17 16 14 27 27 C 1.53927 * 106.71796 * 341.65919 * 26 17 16 28 28 H 1.09007 * 113.00971 * 150.83526 * 27 26 17 29 29 C 1.46774 * 125.33606 * 359.68851 * 12 10 9 30 30 N 1.28462 * 124.88766 * 95.02419 * 6 3 2 31 31 H 1.08996 * 109.46842 * 185.64804 * 1 2 3 32 32 H 1.08999 * 109.47265 * 305.64969 * 1 2 3 33 33 H 1.08995 * 109.46914 * 65.65476 * 1 2 3 34 34 H 1.09002 * 109.47424 * 239.99941 * 2 1 3 35 35 H 1.09004 * 109.47287 * 119.99819 * 2 1 3 36 36 H 1.08998 * 109.47244 * 55.55227 * 3 2 1 37 37 H 1.08999 * 109.47050 * 54.04259 * 4 3 2 38 38 H 1.08998 * 109.47099 * 174.04561 * 4 3 2 39 39 H 1.09000 * 109.47285 * 58.65383 * 5 4 3 40 40 H 1.09000 * 109.47369 * 178.66289 * 5 4 3 41 41 H 1.08999 * 109.46965 * 298.66039 * 5 4 3 42 42 H 1.08011 * 126.38408 * 0.04437 * 7 6 3 43 43 H 1.07997 * 127.25483 * 179.97438 * 8 7 6 44 44 H 1.08997 * 109.77550 * 300.16678 * 13 12 10 45 45 H 1.09008 * 109.77280 * 60.92118 * 13 12 10 46 46 H 1.08997 * 109.76160 * 247.19880 * 16 14 13 47 47 H 1.09000 * 109.76098 * 7.92091 * 16 14 13 48 48 H 0.97000 * 120.00441 * 179.97438 * 21 20 18 49 49 H 1.08998 * 110.00923 * 222.34314 * 26 17 16 50 50 H 1.08995 * 110.00766 * 100.97356 * 26 17 16 51 51 H 1.09005 * 110.03274 * 280.77615 * 29 12 10 52 52 H 1.09002 * 110.02814 * 42.19670 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5659 1.4440 0.1118 5 6 3.9777 0.8910 1.4777 6 7 1.6411 2.1015 -1.2461 7 6 2.3259 2.0359 -2.4080 8 6 1.6433 2.7697 -3.3179 9 6 0.5185 3.2784 -2.6263 10 6 -0.5366 4.1488 -3.1839 11 8 -0.4861 4.4958 -4.3480 12 7 -1.5554 4.5584 -2.4024 13 6 -2.6610 5.4207 -2.8325 14 6 -3.5841 5.6454 -1.6240 15 1 -3.9489 6.6707 -1.5613 16 6 -4.7148 4.6047 -1.6467 17 7 -4.7486 3.9434 -0.3383 18 6 -5.6123 2.9436 0.0216 19 1 -5.6297 2.5858 1.0405 20 6 -6.4657 2.3902 -0.9230 21 7 -6.3338 2.7056 -2.1940 22 14 -7.8013 1.1979 -0.3903 23 1 -9.0741 1.9367 -0.1919 24 1 -7.9881 0.1630 -1.4389 25 1 -7.4037 0.5459 0.8833 26 6 -3.7121 4.5211 0.5252 27 6 -2.7152 5.2410 -0.4007 28 1 -2.2249 6.0888 0.0781 29 6 -1.7355 4.2064 -0.9889 30 7 0.5896 2.8253 -1.3905 31 1 -0.3633 -1.0227 0.1011 32 1 -0.3634 0.5989 0.8351 33 1 -0.3633 0.4236 -0.9362 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6131 1.9788 0.8474 37 1 3.9885 0.8197 -0.6753 38 1 3.9370 2.4634 0.0057 39 1 3.5863 -0.1197 1.5935 40 1 5.0652 0.8699 1.5484 41 1 3.5749 1.5289 2.2644 42 1 3.2467 1.4980 -2.5795 43 1 1.9047 2.9361 -4.3524 44 1 -2.2693 6.3767 -3.1801 45 1 -3.2162 4.9357 -3.6355 46 1 -5.6676 5.0997 -1.8341 47 1 -4.5222 3.8682 -2.4269 48 1 -6.9298 2.3186 -2.8542 49 1 -3.2041 3.7309 1.0779 50 1 -4.1588 5.2338 1.2184 51 1 -2.1529 3.2031 -0.9042 52 1 -0.7803 4.2592 -0.4664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049097749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:13 Heat of formation + Delta-G solvation = 72.211882 kcal Electronic energy + Delta-G solvation = -32027.560678 eV Core-core repulsion = 28029.563902 eV Total energy + Delta-G solvation = -3997.996776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.69932 -39.84911 -37.99596 -37.13249 -34.80352 -32.30845 -32.25745 -31.53472 -30.79718 -29.95386 -29.32086 -26.93176 -25.46916 -25.33878 -23.66718 -23.20568 -22.49674 -21.73420 -20.08494 -19.88923 -19.20579 -19.02675 -17.56105 -16.92382 -16.46509 -16.31793 -15.68334 -15.19042 -15.00523 -14.62565 -14.45529 -14.24897 -14.01303 -13.64459 -13.59630 -13.32127 -12.93265 -12.79678 -12.67143 -12.60598 -12.51244 -12.30702 -11.94260 -11.92548 -11.82960 -11.49090 -11.37552 -11.28447 -11.18763 -11.03864 -10.84351 -10.81709 -10.62460 -10.32090 -10.04864 -9.96042 -9.75853 -9.72443 -9.58765 -9.16942 -8.99421 -8.58371 -8.11211 -6.77690 -5.66605 -3.03751 1.76855 2.21010 2.36100 3.41127 3.41406 3.46383 3.48905 3.72602 3.97904 4.29772 4.52179 4.53807 4.61616 4.65652 4.77586 4.85797 4.94957 4.99193 5.10430 5.17896 5.27801 5.32744 5.39938 5.42319 5.45341 5.55158 5.59535 5.69675 5.72704 5.74409 5.78250 5.80624 5.80849 5.86956 5.89067 6.07449 6.15175 6.22959 6.30697 6.41806 6.43594 6.56888 6.64966 6.68935 6.75329 6.87525 6.92495 7.50524 7.68693 7.85700 7.90574 8.01872 8.32401 8.54523 9.24515 9.86362 10.50709 11.41785 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010404 B = 0.003521 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.675702 B = 7949.548541 C = 9330.750520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.147 3.853 4 C -0.133 4.133 5 C -0.151 4.151 6 N -0.276 5.276 7 C -0.023 4.023 8 C -0.180 4.180 9 C -0.011 4.011 10 C 0.613 3.387 11 O -0.546 6.546 12 N -0.593 5.593 13 C 0.122 3.878 14 C -0.122 4.122 15 H 0.089 0.911 16 C 0.177 3.823 17 N -0.600 5.600 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.146 3.854 27 C -0.114 4.114 28 H 0.087 0.913 29 C 0.122 3.878 30 N -0.247 5.247 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.176 0.824 43 H 0.159 0.841 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.252 0.748 49 H 0.037 0.963 50 H 0.019 0.981 51 H 0.078 0.922 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.935 -1.818 5.689 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.046 3.954 4 C -0.172 4.172 5 C -0.209 4.209 6 N -0.065 5.065 7 C -0.166 4.166 8 C -0.209 4.209 9 C -0.170 4.170 10 C 0.399 3.601 11 O -0.422 6.422 12 N -0.325 5.325 13 C -0.001 4.001 14 C -0.142 4.142 15 H 0.107 0.893 16 C 0.052 3.948 17 N -0.326 5.326 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.020 3.980 27 C -0.134 4.134 28 H 0.105 0.895 29 C -0.001 4.001 30 N -0.082 5.082 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.193 0.807 43 H 0.176 0.824 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.036 0.964 51 H 0.096 0.904 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.321 -1.835 6.046 22.237 hybrid contribution -0.365 -0.730 -0.553 0.986 sum 20.956 -2.565 5.492 21.815 Atomic orbital electron populations 1.21768 0.93915 1.02198 1.03312 1.22031 0.97915 0.93961 1.03378 1.21762 0.95739 0.94138 0.83728 1.21893 0.92665 1.02968 0.99635 1.21789 1.01875 1.01586 0.95618 1.45742 1.15966 1.34827 1.09923 1.22679 1.01448 1.06044 0.86394 1.21710 0.95704 1.02408 1.01030 1.21876 0.99187 1.04777 0.91201 1.16495 0.79739 0.79296 0.84529 1.90759 1.77130 1.58179 1.16160 1.48033 1.23145 1.48943 1.12370 1.21839 0.86984 0.93505 0.97734 1.23109 0.97139 1.01078 0.92838 0.89277 1.21213 0.92669 0.91526 0.89397 1.44198 1.36915 1.41114 1.10351 1.19013 1.11862 1.10383 0.94518 0.90497 1.24800 1.00260 0.99989 0.95256 1.69953 1.39505 1.47206 0.99672 0.86136 0.82137 0.80374 0.77331 1.21673 1.21835 1.20661 1.21160 0.89095 0.95051 0.92707 1.22989 0.95977 0.97456 0.96970 0.89491 1.22156 0.98990 0.99148 0.79786 1.73732 1.05997 1.08353 1.20132 0.92261 0.91909 0.92159 0.91201 0.89466 0.87250 0.90680 0.90655 0.91785 0.91756 0.92030 0.80730 0.82363 0.92247 0.90704 0.95391 0.91178 0.93761 0.94478 0.96382 0.90402 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.64 37.16 0.36 -1.37 16 2 C -0.13 -1.06 5.48 -26.73 -0.15 -1.21 16 3 C 0.15 1.20 2.65 -67.93 -0.18 1.02 16 4 C -0.13 -0.73 4.86 -26.73 -0.13 -0.86 16 5 C -0.15 -0.63 9.72 37.16 0.36 -0.27 16 6 N -0.28 -3.18 2.82 -54.83 -0.15 -3.33 16 7 C -0.02 -0.25 10.55 -17.17 -0.18 -0.43 16 8 C -0.18 -2.48 10.81 -39.37 -0.43 -2.91 16 9 C -0.01 -0.18 6.96 -82.76 -0.58 -0.75 16 10 C 0.61 11.95 7.84 -12.39 -0.10 11.86 16 11 O -0.55 -11.85 17.23 5.30 0.09 -11.76 16 12 N -0.59 -11.29 3.31 -173.33 -0.57 -11.86 16 13 C 0.12 2.28 6.23 -3.57 -0.02 2.26 16 14 C -0.12 -2.30 4.02 -88.60 -0.36 -2.65 16 15 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 16 C 0.18 4.28 4.83 -3.61 -0.02 4.26 16 17 N -0.60 -15.12 3.37 -171.94 -0.58 -15.70 16 18 C -0.23 -6.35 10.23 -15.06 -0.15 -6.51 16 19 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 20 C -0.01 -0.18 5.44 -17.43 -0.09 -0.27 16 21 N -0.92 -27.13 10.43 55.49 0.58 -26.55 16 22 Si 0.91 22.23 29.56 -169.99 -5.03 17.20 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.15 2.97 6.37 -3.43 -0.02 2.95 16 27 C -0.11 -1.99 4.19 -88.26 -0.37 -2.36 16 28 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 29 C 0.12 2.19 5.20 -3.29 -0.02 2.17 16 30 N -0.25 -3.71 8.61 33.42 0.29 -3.42 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.86 7.46 -51.93 -0.39 0.48 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.50 6.38 -51.93 -0.33 0.17 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.34 7.37 -51.93 -0.38 -0.04 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.24 6.45 -51.93 -0.33 -0.09 16 40 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.18 1.17 7.33 -52.48 -0.38 0.79 16 43 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.54 7.44 -51.92 -0.39 1.15 16 46 H 0.03 0.74 7.98 -51.93 -0.41 0.33 16 47 H 0.07 1.94 5.96 -51.93 -0.31 1.63 16 48 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.04 0.74 7.94 -51.93 -0.41 0.32 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.08 1.64 7.72 -51.93 -0.40 1.24 16 52 H 0.08 1.26 6.49 -51.93 -0.34 0.93 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -33.76 403.96 -10.06 -43.82 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.70 Total: 0.59 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.07 Total: 4.93 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.44 Total: -60.86 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.76 -10.06 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049097749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.027 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds