Wall clock time and date at job start Wed Apr 1 2020 04:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47083 * 2 1 4 4 C 1.52995 * 109.46764 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47050 * 179.97438 * 4 3 2 6 6 N 1.39936 * 125.74948 * 90.02463 * 5 4 3 7 7 C 1.30447 * 108.89557 * 179.97438 * 6 5 4 8 8 C 1.41283 * 108.02643 * 0.02562 * 7 6 5 9 9 C 1.47426 * 126.41805 * 180.02562 * 8 7 6 10 10 O 1.21604 * 120.00123 * 174.30908 * 9 8 7 11 11 N 1.34777 * 119.99815 * 354.30117 * 9 8 7 12 12 C 1.46660 * 125.33971 * 4.75163 * 11 9 8 13 13 C 1.53725 * 107.94663 * 180.54358 * 12 11 9 14 14 H 1.08991 * 112.56716 * 139.71663 * 13 12 11 15 15 C 1.53697 * 109.33993 * 266.25194 * 13 12 11 16 16 N 1.46641 * 108.00834 * 127.55243 * 15 13 12 17 17 C 1.36932 * 125.32636 * 180.81415 * 16 15 13 18 18 H 1.08008 * 120.00023 * 180.02562 * 17 16 15 19 19 C 1.38809 * 120.00458 * 0.02952 * 17 16 15 20 20 N 1.31625 * 119.99701 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00318 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47263 * 59.99971 * 21 19 17 23 23 H 1.48507 * 109.46988 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47097 * 299.99665 * 21 19 17 25 25 C 1.46748 * 109.34223 * 0.83558 * 16 15 13 26 26 C 1.53924 * 106.72090 * 341.65936 * 25 16 15 27 27 H 1.09005 * 113.01182 * 150.83104 * 26 25 16 28 28 C 1.46781 * 125.33618 * 184.43902 * 11 9 8 29 29 C 1.34251 * 125.75901 * 269.72399 * 5 4 3 30 30 C 1.50703 * 126.28978 * 0.02562 * 29 5 4 31 31 H 1.09002 * 109.47144 * 300.00520 * 1 2 3 32 32 H 1.08998 * 109.46968 * 60.00411 * 1 2 3 33 33 H 1.08999 * 109.47100 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.47419 * 239.99559 * 2 1 3 35 35 H 1.08998 * 109.46968 * 119.99589 * 2 1 3 36 36 H 1.08998 * 109.46883 * 299.99641 * 3 2 1 37 37 H 1.08993 * 109.46979 * 59.99910 * 3 2 1 38 38 H 1.08998 * 109.47411 * 299.99665 * 4 3 2 39 39 H 1.09002 * 109.46888 * 60.00291 * 4 3 2 40 40 H 1.08003 * 125.98808 * 179.97438 * 7 6 5 41 41 H 1.09001 * 109.77310 * 300.16645 * 12 11 9 42 42 H 1.09004 * 109.77565 * 60.92214 * 12 11 9 43 43 H 1.08997 * 109.76106 * 247.19160 * 15 13 12 44 44 H 1.09005 * 109.75925 * 7.91229 * 15 13 12 45 45 H 0.97003 * 119.99898 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.01086 * 222.34195 * 25 16 15 47 47 H 1.09000 * 110.00662 * 100.97754 * 25 16 15 48 48 H 1.09001 * 110.02907 * 280.77632 * 28 11 9 49 49 H 1.08997 * 110.02382 * 42.19720 * 28 11 9 50 50 H 1.08999 * 109.47210 * 90.00861 * 30 29 5 51 51 H 1.09004 * 109.47137 * 210.00679 * 30 29 5 52 52 H 1.08996 * 109.47137 * 330.00297 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 7 4.3309 3.5950 1.1354 7 6 4.7476 4.7717 0.7566 8 6 4.7571 4.7984 -0.6559 9 6 5.1594 5.9328 -1.5072 10 8 5.2215 5.7955 -2.7139 11 7 5.4583 7.1221 -0.9480 12 6 5.5181 7.3912 0.4925 13 6 5.8792 8.8732 0.6829 14 1 5.3198 9.3391 1.4940 15 6 7.4014 9.0094 0.8457 16 7 7.8733 10.0062 -0.1207 17 6 9.1768 10.3902 -0.2895 18 1 9.4288 11.1354 -1.0297 19 6 10.1745 9.8218 0.4904 20 7 9.8675 8.9140 1.3927 21 14 11.9528 10.3451 0.2596 22 1 12.0783 11.8013 0.5220 23 1 12.8163 9.5957 1.2072 24 1 12.3774 10.0547 -1.1334 25 6 6.7300 10.5282 -0.8782 26 6 5.5822 9.5182 -0.6996 27 1 4.5961 9.9793 -0.7564 28 6 5.7812 8.3496 -1.6852 29 6 4.3253 3.5609 -1.0897 30 6 4.1771 3.1201 -2.5232 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 3.9330 0.9288 0.8909 39 1 3.9336 0.9285 -0.8892 40 1 5.0343 5.5836 1.4086 41 1 4.5485 7.1866 0.9464 42 1 6.2809 6.7637 0.9534 43 1 7.6358 9.3380 1.8582 44 1 7.8803 8.0501 0.6493 45 1 10.5646 8.5170 1.9381 46 1 6.9897 10.6148 -1.9332 47 1 6.4351 11.5012 -0.4852 48 1 6.8156 8.3183 -2.0275 49 1 5.1091 8.4617 -2.5360 50 1 3.1727 3.3568 -2.8741 51 1 4.9097 3.6398 -3.1408 52 1 4.3418 2.0448 -2.5915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049160852.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:49 Heat of formation + Delta-G solvation = 65.294617 kcal Electronic energy + Delta-G solvation = -31032.279865 eV Core-core repulsion = 27033.983134 eV Total energy + Delta-G solvation = -3998.296731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.56282 -39.83025 -37.87273 -36.38639 -34.93925 -33.28898 -32.23112 -31.95441 -30.17327 -29.80063 -28.68493 -27.41057 -25.63928 -25.45290 -24.31009 -23.38031 -21.74088 -21.52834 -20.41180 -20.00494 -19.35365 -18.69959 -17.24728 -16.70881 -16.36198 -15.97789 -15.59028 -15.42001 -15.13291 -14.66687 -14.41205 -14.24656 -13.90660 -13.66169 -13.54217 -13.23058 -13.11369 -13.07078 -12.85936 -12.68037 -12.58798 -12.28873 -11.96891 -11.86381 -11.83887 -11.75688 -11.58199 -11.39377 -11.34314 -11.12311 -10.87939 -10.82014 -10.75795 -10.31052 -10.09640 -10.04935 -9.81024 -9.62856 -9.52557 -9.42248 -8.65028 -8.57165 -8.14413 -6.80830 -5.70434 -3.03395 1.51123 2.21350 2.25680 3.39176 3.42600 3.46966 3.47876 3.66467 4.19321 4.27737 4.45547 4.51820 4.54591 4.59280 4.77656 4.85968 4.86701 4.95107 5.03085 5.06242 5.25235 5.27005 5.29693 5.34000 5.40384 5.41938 5.46583 5.52049 5.54766 5.62781 5.69105 5.73288 5.77662 5.79452 5.83287 5.85504 6.00779 6.09847 6.25406 6.28332 6.41860 6.45401 6.59889 6.66180 6.76614 6.79134 6.87547 7.54563 7.57661 7.58954 7.82604 7.92674 8.28780 8.55724 9.24383 9.84862 10.48498 11.41204 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.002321 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.571322 B =12062.584326 C =12451.104300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.128 3.872 5 N -0.362 5.362 6 N -0.301 5.301 7 C 0.074 3.926 8 C -0.288 4.288 9 C 0.608 3.392 10 O -0.557 6.557 11 N -0.603 5.603 12 C 0.107 3.893 13 C -0.124 4.124 14 H 0.091 0.909 15 C 0.185 3.815 16 N -0.602 5.602 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.145 3.855 26 C -0.111 4.111 27 H 0.089 0.911 28 C 0.124 3.876 29 C 0.153 3.847 30 C -0.098 4.098 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.201 0.799 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.253 0.747 46 H 0.038 0.962 47 H 0.020 0.980 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.108 0.892 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.483 -15.460 -2.353 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.007 3.993 5 N -0.142 5.142 6 N -0.119 5.119 7 C -0.113 4.113 8 C -0.302 4.302 9 C 0.399 3.601 10 O -0.438 6.438 11 N -0.334 5.334 12 C -0.016 4.016 13 C -0.144 4.144 14 H 0.110 0.890 15 C 0.060 3.940 16 N -0.328 5.328 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.018 3.982 26 C -0.131 4.131 27 H 0.107 0.893 28 C 0.002 3.998 29 C 0.021 3.979 30 C -0.157 4.157 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.217 0.783 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.038 0.962 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.102 0.898 51 H 0.127 0.873 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.553 -16.559 -1.897 24.940 hybrid contribution 1.208 0.788 -0.474 1.518 sum -17.345 -15.771 -2.371 23.562 Atomic orbital electron populations 1.21753 0.95273 1.01855 1.02110 1.21449 0.96492 0.95491 1.02471 1.22034 0.93665 0.98146 1.03682 1.21823 0.94976 0.77779 1.04710 1.48510 1.50006 1.12191 1.03494 1.77199 1.22868 1.04514 1.07365 1.24809 0.96371 0.95698 0.94414 1.19950 1.20506 0.96155 0.93601 1.16766 0.76432 0.80535 0.86395 1.90690 1.55727 1.82853 1.14494 1.47935 1.68361 1.09483 1.07660 1.22248 1.00234 0.97607 0.81536 1.23174 1.01430 0.92739 0.97073 0.89042 1.21112 0.84864 0.94065 0.93920 1.44187 1.02086 1.45932 1.40628 1.18991 0.81433 1.18580 1.16644 0.90445 1.24790 0.98084 0.98955 0.98551 1.69938 1.31491 1.30439 1.25091 0.86194 0.84487 0.77768 0.77280 1.21192 1.21650 1.21188 1.21166 0.87140 0.94015 0.95830 1.22960 0.99336 0.95998 0.94815 0.89285 1.21953 1.01440 0.82007 0.94367 1.21444 0.94836 0.90610 0.91012 1.20682 1.04916 1.01366 0.88694 0.92575 0.92598 0.92461 0.91589 0.91503 0.91198 0.90730 0.88378 0.88782 0.78257 0.91929 0.90578 0.93724 0.93092 0.93717 0.94380 0.96247 0.90490 0.91621 0.89829 0.87319 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.59 5.93 -26.73 -0.16 -0.75 16 3 C -0.14 -0.91 5.54 -26.73 -0.15 -1.06 16 4 C 0.13 0.99 6.22 -4.04 -0.03 0.97 16 5 N -0.36 -4.35 3.58 -56.61 -0.20 -4.55 16 6 N -0.30 -4.27 12.50 30.86 0.39 -3.89 16 7 C 0.07 1.07 10.41 -16.98 -0.18 0.89 16 8 C -0.29 -4.46 6.08 -105.07 -0.64 -5.10 16 9 C 0.61 10.84 7.82 -12.52 -0.10 10.74 16 10 O -0.56 -11.03 15.13 5.27 0.08 -10.95 16 11 N -0.60 -10.45 3.31 -173.44 -0.57 -11.03 16 12 C 0.11 1.67 4.39 -3.58 -0.02 1.65 16 13 C -0.12 -2.15 4.02 -88.60 -0.36 -2.50 16 14 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 15 C 0.19 4.28 4.75 -3.60 -0.02 4.26 16 16 N -0.60 -14.94 3.37 -171.93 -0.58 -15.52 16 17 C -0.23 -6.29 10.25 -15.06 -0.15 -6.44 16 18 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 20 N -0.92 -26.75 10.25 55.49 0.57 -26.19 16 21 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.15 2.90 6.37 -3.43 -0.02 2.88 16 26 C -0.11 -1.86 4.19 -88.25 -0.37 -2.23 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 28 C 0.12 2.21 6.08 -3.28 -0.02 2.19 16 29 C 0.15 2.02 7.00 -81.60 -0.57 1.45 16 30 C -0.10 -1.02 9.62 36.01 0.35 -0.68 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.54 7.01 -51.93 -0.36 0.17 16 40 H 0.20 2.57 4.50 -52.48 -0.24 2.34 16 41 H 0.06 0.81 6.73 -51.93 -0.35 0.46 16 42 H 0.08 1.24 6.32 -51.93 -0.33 0.92 16 43 H 0.04 1.15 7.45 -51.93 -0.39 0.76 16 44 H 0.05 1.33 6.51 -51.93 -0.34 0.99 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.04 0.75 7.94 -51.93 -0.41 0.34 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 1.61 7.72 -51.93 -0.40 1.21 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.11 1.38 6.42 -51.93 -0.33 1.05 16 52 H 0.07 0.51 7.05 -51.93 -0.37 0.14 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -33.52 402.70 -9.99 -43.51 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.56 Total: -0.19 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -2.15 Total: 5.57 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.40 Total: -61.17 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.52 -9.99 -43.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049160852.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.801 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds