Wall clock time and date at job start Wed Apr 1 2020 04:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 C 1.52997 * 109.47548 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47493 * 180.02562 * 4 3 2 6 6 C 1.34257 * 125.76091 * 124.99738 * 5 4 3 7 7 C 1.38039 * 107.42049 * 180.02562 * 6 5 4 8 8 C 1.47433 * 126.41721 * 180.02562 * 7 6 5 9 9 O 1.21599 * 119.99955 * 174.29318 * 8 7 6 10 10 N 1.34777 * 119.99722 * 354.28666 * 8 7 6 11 11 C 1.46673 * 125.33917 * 4.74199 * 10 8 7 12 12 C 1.53721 * 107.94291 * 180.54802 * 11 10 8 13 13 H 1.08999 * 112.56238 * 139.72320 * 12 11 10 14 14 C 1.53696 * 109.33877 * 266.25251 * 12 11 10 15 15 N 1.46637 * 108.00883 * 127.55607 * 14 12 11 16 16 C 1.36936 * 125.33229 * 180.81625 * 15 14 12 17 17 H 1.08000 * 120.00152 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99681 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00112 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99884 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47544 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47298 * 120.00515 * 20 18 16 23 23 H 1.48504 * 109.47475 * 240.00528 * 20 18 16 24 24 C 1.46747 * 109.34373 * 0.83811 * 15 14 12 25 25 C 1.53937 * 106.71500 * 341.65893 * 24 15 14 26 26 H 1.09008 * 113.00946 * 150.83300 * 25 24 15 27 27 C 1.46772 * 125.33810 * 184.44386 * 10 8 7 28 28 C 1.41289 * 107.17016 * 359.97438 * 7 6 5 29 29 C 1.50701 * 125.98843 * 180.02562 * 28 7 6 30 30 N 1.30447 * 108.02448 * 0.02562 * 28 7 6 31 31 H 1.09002 * 109.47221 * 59.99840 * 1 2 3 32 32 H 1.09006 * 109.46923 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47323 * 299.99661 * 1 2 3 34 34 H 1.09007 * 109.47147 * 240.00453 * 2 1 3 35 35 H 1.09001 * 109.47666 * 120.00454 * 2 1 3 36 36 H 1.09007 * 109.46701 * 60.00180 * 3 2 1 37 37 H 1.09001 * 109.47182 * 300.00750 * 3 2 1 38 38 H 1.08994 * 109.47266 * 60.00160 * 4 3 2 39 39 H 1.09002 * 109.46930 * 300.00195 * 4 3 2 40 40 H 1.08000 * 126.28820 * 0.02562 * 6 5 4 41 41 H 1.09001 * 109.77130 * 300.17405 * 11 10 8 42 42 H 1.09003 * 109.76883 * 60.92634 * 11 10 8 43 43 H 1.09000 * 109.76118 * 247.19644 * 14 12 11 44 44 H 1.08999 * 109.76056 * 7.91705 * 14 12 11 45 45 H 0.97004 * 120.00046 * 179.97438 * 19 18 16 46 46 H 1.08993 * 110.01049 * 222.34659 * 24 15 14 47 47 H 1.08997 * 110.01218 * 100.96700 * 24 15 14 48 48 H 1.09005 * 110.02612 * 280.77209 * 27 10 8 49 49 H 1.08996 * 110.03177 * 42.18534 * 27 10 8 50 50 H 1.08998 * 109.47215 * 270.00522 * 29 28 7 51 51 H 1.09000 * 109.46879 * 30.00754 * 29 28 7 52 52 H 1.09001 * 109.46993 * 150.00233 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.9093 3.3547 0.8924 7 6 5.1106 4.6734 0.5376 8 6 5.9725 5.6455 1.2345 9 8 6.1467 6.7522 0.7617 10 7 6.5673 5.3076 2.3958 11 6 6.5189 3.9808 3.0191 12 6 7.3170 4.0446 4.3313 13 1 6.8381 3.4916 5.1394 14 6 8.7635 3.5958 4.0696 15 7 9.6608 4.6329 4.5888 16 6 11.0284 4.6005 4.5265 17 1 11.6071 5.4140 4.9385 18 6 11.6708 3.5221 3.9339 19 7 10.9654 2.5309 3.4314 20 14 13.5363 3.4782 3.8482 21 1 14.0898 4.7033 4.4792 22 1 14.0370 2.2808 4.5699 23 1 13.9653 3.4155 2.4279 24 6 8.8639 5.7106 5.1862 25 6 7.4354 5.5647 4.6315 26 1 6.6720 5.9283 5.3194 27 6 7.3700 6.2079 3.2320 28 6 4.3368 4.9169 -0.6192 29 6 4.2447 6.2237 -1.3641 30 7 3.7161 3.8123 -0.9295 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.6766 1.9564 -0.8899 38 1 3.9329 0.9290 -0.8908 39 1 3.9337 0.9286 0.8891 40 1 5.3546 2.8438 1.7333 41 1 5.4843 3.7097 3.2295 42 1 6.9649 3.2434 2.3516 43 1 8.9551 2.6527 4.5814 44 1 8.9231 3.4730 2.9984 45 1 11.4143 1.7775 3.0170 46 1 9.2763 6.6794 4.9046 47 1 8.8545 5.6100 6.2715 48 1 8.3730 6.3078 2.8168 49 1 6.8921 7.1856 3.2935 50 1 3.4290 6.8191 -0.9539 51 1 5.1822 6.7695 -1.2576 52 1 4.0564 6.0277 -2.4197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049161233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:32 Heat of formation + Delta-G solvation = 65.322273 kcal Electronic energy + Delta-G solvation = -31130.319790 eV Core-core repulsion = 27132.024259 eV Total energy + Delta-G solvation = -3998.295532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.51538 -39.85806 -37.91307 -36.33497 -34.98774 -33.45649 -32.43981 -30.94182 -30.24806 -29.96259 -29.08843 -27.52000 -25.69921 -25.50790 -24.19944 -23.14756 -21.64449 -21.50072 -20.48519 -20.04450 -19.40601 -18.88363 -17.08507 -16.60416 -16.44367 -16.19560 -15.68202 -15.35321 -15.10596 -14.66658 -14.37081 -14.19619 -14.03082 -13.67356 -13.61043 -13.18403 -13.16427 -12.81250 -12.72270 -12.65839 -12.62422 -12.10035 -11.97600 -11.85491 -11.82006 -11.66700 -11.49462 -11.45660 -11.39370 -11.09311 -10.91108 -10.83573 -10.78259 -10.37793 -10.11708 -10.07811 -9.86317 -9.67937 -9.52472 -9.34913 -8.67105 -8.62608 -8.21471 -6.85936 -5.75953 -3.08507 1.53668 2.22048 2.23544 3.36629 3.38355 3.44576 3.46406 3.65485 4.08473 4.39829 4.47637 4.54552 4.59057 4.65838 4.73701 4.81658 4.90000 4.95582 5.06801 5.20108 5.25328 5.30925 5.35142 5.36037 5.41429 5.48979 5.50023 5.51738 5.68418 5.70390 5.71043 5.72968 5.74760 5.76772 5.88608 5.94967 6.03245 6.06096 6.17652 6.22044 6.38810 6.54189 6.57060 6.61029 6.68917 6.79186 6.82129 7.50872 7.52442 7.58169 7.76996 7.88654 8.23102 8.54362 9.19376 9.79835 10.43017 11.35998 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002720 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.551727 B =10292.012969 C =11248.821883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.129 3.871 5 N -0.361 5.361 6 C 0.090 3.910 7 C -0.281 4.281 8 C 0.607 3.393 9 O -0.549 6.549 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.124 4.124 13 H 0.091 0.909 14 C 0.185 3.815 15 N -0.602 5.602 16 C -0.226 4.226 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.145 3.855 25 C -0.111 4.111 26 H 0.089 0.911 27 C 0.124 3.876 28 C 0.130 3.870 29 C -0.077 4.077 30 N -0.304 5.304 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.194 0.806 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.251 0.749 46 H 0.039 0.961 47 H 0.020 0.980 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.097 0.903 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.004 -3.424 -4.158 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.169 4.169 4 C 0.009 3.991 5 N -0.138 5.138 6 C -0.061 4.061 7 C -0.296 4.296 8 C 0.397 3.603 9 O -0.428 6.428 10 N -0.338 5.338 11 C -0.017 4.017 12 C -0.144 4.144 13 H 0.109 0.891 14 C 0.060 3.940 15 N -0.329 5.329 16 C -0.354 4.354 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.018 3.982 25 C -0.131 4.131 26 H 0.107 0.893 27 C 0.002 3.998 28 C -0.037 4.037 29 C -0.135 4.135 30 N -0.126 5.126 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.210 0.790 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.116 0.884 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.624 -3.676 -5.383 21.629 hybrid contribution 1.606 -0.070 0.633 1.727 sum -19.018 -3.746 -4.750 19.957 Atomic orbital electron populations 1.21746 0.95328 1.01803 1.02058 1.21468 0.96481 0.95627 1.02483 1.21901 0.93176 0.97925 1.03946 1.21898 0.95849 0.77038 1.04364 1.48455 1.34476 1.10285 1.20632 1.23966 0.92623 0.94245 0.95220 1.20192 1.11339 0.94574 1.03497 1.16829 0.78529 0.86096 0.78843 1.90705 1.64012 1.22719 1.65399 1.48017 1.51336 1.12489 1.21968 1.22215 0.98944 0.85305 0.95201 1.23162 0.99798 0.96305 0.95110 0.89076 1.21106 0.82123 0.91664 0.99064 1.44202 1.01920 1.18674 1.68057 1.19097 0.80050 1.03960 1.32341 0.90286 1.24783 0.98097 0.96880 1.00648 1.69950 1.33158 1.09897 1.44036 0.86040 0.85043 0.77344 0.77318 1.20475 1.21790 1.21778 1.21175 0.88556 0.92952 0.95501 1.22965 0.99039 0.95444 0.95633 0.89256 1.21955 0.95966 0.92717 0.89176 1.22422 0.92861 0.95059 0.93405 1.20335 1.04764 0.90161 0.98262 1.77079 1.24872 0.96746 1.13860 0.92598 0.92500 0.92642 0.91546 0.91561 0.91296 0.90272 0.89346 0.88215 0.78969 0.92258 0.90837 0.93736 0.93119 0.93861 0.94286 0.96196 0.90456 0.91511 0.90511 0.88430 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.67 5.93 -26.73 -0.16 -0.83 16 3 C -0.13 -0.95 5.39 -26.73 -0.14 -1.09 16 4 C 0.13 1.02 6.49 -4.04 -0.03 1.00 16 5 N -0.36 -4.31 3.65 -60.82 -0.22 -4.53 16 6 C 0.09 1.14 9.88 -16.56 -0.16 0.98 16 7 C -0.28 -4.37 6.09 -105.07 -0.64 -5.01 16 8 C 0.61 10.82 7.82 -12.52 -0.10 10.73 16 9 O -0.55 -11.11 15.20 5.28 0.08 -11.03 16 10 N -0.61 -10.25 3.31 -173.43 -0.57 -10.82 16 11 C 0.11 1.56 4.40 -3.57 -0.02 1.54 16 12 C -0.12 -2.04 4.02 -88.61 -0.36 -2.40 16 13 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 14 C 0.19 4.15 4.75 -3.61 -0.02 4.13 16 15 N -0.60 -14.65 3.37 -171.93 -0.58 -15.23 16 16 C -0.23 -6.14 10.25 -15.06 -0.15 -6.29 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 19 N -0.92 -26.21 10.25 55.49 0.57 -25.65 16 20 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 C 0.14 2.83 6.37 -3.42 -0.02 2.81 16 25 C -0.11 -1.80 4.19 -88.25 -0.37 -2.17 16 26 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 27 C 0.12 2.17 6.09 -3.29 -0.02 2.15 16 28 C 0.13 1.94 7.26 -82.02 -0.60 1.35 16 29 C -0.08 -0.99 9.98 36.01 0.36 -0.63 16 30 N -0.30 -4.30 12.33 33.90 0.42 -3.89 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.56 8.06 -51.93 -0.42 0.14 16 40 H 0.19 2.01 4.45 -52.49 -0.23 1.78 16 41 H 0.06 0.69 6.75 -51.93 -0.35 0.34 16 42 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 43 H 0.04 1.11 7.46 -51.93 -0.39 0.72 16 44 H 0.05 1.29 6.50 -51.93 -0.34 0.95 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 46 H 0.04 0.76 7.94 -51.93 -0.41 0.35 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 1.59 7.72 -51.93 -0.40 1.19 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.10 1.41 6.46 -51.93 -0.34 1.07 16 52 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -33.26 405.08 -10.05 -43.30 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.67 Total: -0.62 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.15 Total: 5.47 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.39 Total: -60.11 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.26 -10.05 -43.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049161233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.626 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds