Wall clock time and date at job start Wed Apr 1 2020 04:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46963 * 2 1 4 4 C 1.52987 * 109.47545 * 240.00180 * 2 1 3 5 5 N 1.46502 * 109.46888 * 119.99491 * 2 1 3 6 6 C 1.35032 * 124.88291 * 75.00826 * 5 2 1 7 7 C 1.35364 * 107.23286 * 180.02562 * 6 5 2 8 8 C 1.41503 * 105.49911 * 359.97438 * 7 6 5 9 9 C 1.47712 * 126.51636 * 179.97438 * 8 7 6 10 10 O 1.21569 * 120.00078 * 4.81879 * 9 8 7 11 11 N 1.34775 * 119.99815 * 184.81093 * 9 8 7 12 12 C 1.47846 * 122.23092 * 354.30039 * 11 9 8 13 13 C 1.52718 * 111.06464 * 232.45884 * 12 11 9 14 14 C 1.53868 * 111.52502 * 311.46844 * 13 12 11 15 15 C 1.51088 * 107.33287 * 56.92553 * 14 13 12 16 16 H 1.09000 * 108.73666 * 50.83878 * 15 14 13 17 17 C 1.45731 * 122.22604 * 174.27391 * 11 9 8 18 18 H 1.08993 * 111.07041 * 240.54765 * 17 11 9 19 19 C 1.53435 * 116.37095 * 9.92495 * 17 11 9 20 20 C 1.55468 * 101.67233 * 152.71442 * 19 17 11 21 21 N 1.45023 * 119.18665 * 176.09724 * 15 14 13 22 22 C 1.36930 * 126.56605 * 330.95594 * 21 15 14 23 23 H 1.08005 * 120.00223 * 0.02562 * 22 21 15 24 24 C 1.38819 * 120.00359 * 179.97438 * 22 21 15 25 25 N 1.31617 * 119.99594 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00139 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46797 * 90.00329 * 26 24 22 28 28 H 1.48500 * 109.47018 * 210.00378 * 26 24 22 29 29 H 1.48498 * 109.47142 * 330.00366 * 26 24 22 30 30 N 1.28464 * 124.88860 * 255.33056 * 5 2 1 31 31 H 1.09001 * 109.47451 * 299.99644 * 1 2 3 32 32 H 1.09002 * 109.47417 * 60.00171 * 1 2 3 33 33 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47253 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47155 * 300.00187 * 3 2 1 36 36 H 1.09001 * 109.46746 * 59.99924 * 3 2 1 37 37 H 1.09008 * 109.47088 * 299.99887 * 4 2 1 38 38 H 1.09000 * 109.47526 * 59.99642 * 4 2 1 39 39 H 1.08997 * 109.47595 * 179.97438 * 4 2 1 40 40 H 1.08010 * 126.38484 * 0.05064 * 6 5 2 41 41 H 1.07993 * 127.25048 * 180.02562 * 7 6 5 42 42 H 1.08997 * 109.16480 * 112.05107 * 12 11 9 43 43 H 1.09004 * 109.11832 * 352.83413 * 12 11 9 44 44 H 1.09003 * 109.06964 * 190.94350 * 13 12 11 45 45 H 1.08999 * 109.01665 * 71.96683 * 13 12 11 46 46 H 1.09001 * 109.88618 * 297.47047 * 14 13 12 47 47 H 1.08998 * 109.88477 * 176.38230 * 14 13 12 48 48 H 1.08996 * 110.98491 * 270.81223 * 19 17 11 49 49 H 1.09004 * 110.98249 * 34.62161 * 19 17 11 50 50 H 1.09002 * 109.96110 * 218.02404 * 20 19 17 51 51 H 1.09001 * 109.95890 * 96.78212 * 20 19 17 52 52 H 0.97006 * 119.99882 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2491 5 7 2.0182 -0.6905 1.1963 6 6 2.0055 -2.0289 1.3746 7 6 2.5350 -2.2758 2.5957 8 6 2.8624 -1.0069 3.1295 9 6 3.4710 -0.7386 4.4484 10 8 3.8200 -1.6633 5.1562 11 7 3.6395 0.5314 4.8669 12 6 3.3484 1.6927 3.9995 13 6 4.5409 2.6448 3.9384 14 6 5.0824 2.9622 5.3433 15 6 5.4396 1.6471 5.9957 16 1 6.0712 1.0780 5.3135 17 6 4.1202 0.8514 6.2049 18 1 3.3850 1.4381 6.7556 19 6 4.6497 -0.3234 7.0379 20 6 5.6654 0.3883 7.9754 21 7 6.0591 1.6533 7.3069 22 6 6.8591 2.6357 7.8265 23 1 7.0821 3.5161 7.2420 24 6 7.3826 2.5007 9.1051 25 7 7.1105 1.4281 9.8177 26 14 8.4745 3.8406 9.8136 27 1 7.6361 4.8346 10.5307 28 1 9.4465 3.2377 10.7607 29 1 9.2087 4.5145 8.7128 30 7 2.5147 -0.1095 2.2288 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6765 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7207 -1.2494 40 1 1.6411 -2.7653 0.6735 41 1 2.6782 -3.2386 3.0636 42 1 2.4842 2.2267 4.3945 43 1 3.1212 1.3390 2.9937 44 1 4.2312 3.5730 3.4581 45 1 5.3326 2.1850 3.3470 46 1 4.3171 3.4709 5.9295 47 1 5.9697 3.5905 5.2654 48 1 3.8478 -0.7877 7.6118 49 1 5.1499 -1.0565 6.4050 50 1 6.5417 -0.2431 8.1224 51 1 5.1970 0.6049 8.9355 52 1 7.4766 1.3335 10.7110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049501237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:05 Heat of formation + Delta-G solvation = 93.797307 kcal Electronic energy + Delta-G solvation = -32202.580625 eV Core-core repulsion = 28205.519863 eV Total energy + Delta-G solvation = -3997.060761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.87674 -40.00508 -37.70369 -37.00369 -35.27010 -32.48327 -32.21329 -31.04865 -30.78214 -28.78137 -28.04298 -27.98170 -27.76145 -25.21245 -24.35031 -23.16789 -22.01730 -21.33388 -20.55618 -19.96459 -19.49782 -18.84770 -17.24314 -16.62563 -16.22657 -16.02857 -15.39637 -14.92381 -14.75518 -14.62283 -14.29185 -14.19670 -14.10141 -13.80528 -13.54391 -13.28407 -13.17156 -12.92493 -12.87136 -12.69823 -12.53636 -12.33603 -12.30512 -12.09490 -11.75630 -11.70201 -11.64496 -11.49844 -11.19932 -10.83407 -10.76939 -10.53928 -10.35015 -10.10696 -9.94789 -9.74842 -9.71370 -9.51409 -9.31412 -9.10841 -8.96577 -8.49351 -8.04811 -6.72880 -5.61550 -2.95236 1.62624 2.12759 2.17520 3.33833 3.45612 3.50254 3.52504 3.66336 3.90260 4.17896 4.28111 4.50292 4.56961 4.58058 4.88157 4.91117 5.05101 5.07659 5.15230 5.16579 5.25785 5.27929 5.33673 5.41615 5.49205 5.53465 5.60300 5.63227 5.64510 5.68678 5.75010 5.77911 5.87328 5.99073 6.02826 6.17905 6.25798 6.33873 6.43393 6.48736 6.55445 6.67674 6.76592 6.85224 6.97149 7.03518 7.34582 7.67832 7.76250 7.80566 7.92106 7.96434 8.34380 8.58398 9.28323 9.92178 10.61535 11.50557 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.002726 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.850187 B =10268.902584 C =11162.210648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.159 4.159 5 N -0.278 5.278 6 C -0.019 4.019 7 C -0.179 4.179 8 C -0.006 4.006 9 C 0.601 3.399 10 O -0.526 6.526 11 N -0.586 5.586 12 C 0.086 3.914 13 C -0.125 4.125 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.017 0.983 17 C 0.116 3.884 18 H 0.079 0.921 19 C -0.134 4.134 20 C 0.173 3.827 21 N -0.593 5.593 22 C -0.223 4.223 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.920 5.920 26 Si 0.910 3.090 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 N -0.259 5.259 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.057 0.943 43 H 0.126 0.874 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.039 0.961 51 H 0.056 0.944 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 -3.165 -25.003 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.217 4.217 5 N -0.067 5.067 6 C -0.162 4.162 7 C -0.207 4.207 8 C -0.166 4.166 9 C 0.387 3.613 10 O -0.401 6.401 11 N -0.317 5.317 12 C -0.037 4.037 13 C -0.164 4.164 14 C -0.154 4.154 15 C 0.050 3.950 16 H 0.035 0.965 17 C 0.012 3.988 18 H 0.097 0.903 19 C -0.173 4.173 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.352 4.352 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 N -0.094 5.094 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.075 0.925 43 H 0.143 0.857 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.057 0.943 51 H 0.074 0.926 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.355 -2.437 -24.727 29.208 hybrid contribution 0.536 -0.105 0.556 0.779 sum -14.819 -2.542 -24.171 28.466 Atomic orbital electron populations 1.22248 0.92306 1.03388 1.03785 1.21014 0.94990 0.94085 0.81387 1.21994 1.02605 0.92478 1.03609 1.22232 1.02645 1.01068 0.95782 1.45980 1.42890 1.04783 1.13004 1.22675 1.07324 0.86369 0.99806 1.21754 1.05232 0.98808 0.94932 1.22205 1.06734 0.91460 0.96203 1.16968 0.78287 0.82664 0.83417 1.90778 1.50415 1.43863 1.55092 1.47793 1.64440 1.04908 1.14604 1.22423 0.96976 0.86774 0.97574 1.21874 0.97876 0.98601 0.98083 1.21443 1.00780 0.98730 0.94490 1.20750 0.91311 0.93708 0.89223 0.96549 1.22441 0.96141 0.98571 0.81655 0.90266 1.23047 0.99534 0.96489 0.98213 1.21733 0.94362 0.85495 0.93540 1.44087 1.55828 1.19770 1.12072 1.18993 1.21184 0.97506 0.97472 0.90421 1.24800 1.00902 0.97835 0.96970 1.69956 1.48535 1.27215 1.11055 0.86153 0.80055 0.80960 0.78799 1.21703 1.21745 1.20790 1.73234 1.14930 1.25465 0.95778 0.91292 0.90055 0.91573 0.91209 0.90566 0.90564 0.91352 0.89815 0.91217 0.80712 0.82207 0.92495 0.85715 0.91265 0.92180 0.91904 0.91679 0.92209 0.89382 0.94317 0.92623 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 8.70 37.15 0.32 -0.43 16 2 C 0.17 1.02 1.21 -131.82 -0.16 0.86 16 3 C -0.15 -0.90 8.01 37.16 0.30 -0.60 16 4 C -0.16 -0.66 8.27 37.15 0.31 -0.35 16 5 N -0.28 -2.66 3.16 -48.62 -0.15 -2.81 16 6 C -0.02 -0.17 10.52 -17.17 -0.18 -0.36 16 7 C -0.18 -2.23 10.81 -39.36 -0.43 -2.65 16 8 C -0.01 -0.09 6.93 -82.76 -0.57 -0.67 16 9 C 0.60 11.01 7.72 -12.39 -0.10 10.92 16 10 O -0.53 -11.07 13.65 5.30 0.07 -11.00 16 11 N -0.59 -10.48 2.91 -165.15 -0.48 -10.96 16 12 C 0.09 1.25 6.21 -3.45 -0.02 1.23 16 13 C -0.13 -1.83 5.92 -26.42 -0.16 -1.99 16 14 C -0.12 -2.14 5.46 -27.24 -0.15 -2.29 16 15 C 0.16 3.55 2.58 -68.36 -0.18 3.37 16 16 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 17 C 0.12 2.39 3.33 -66.79 -0.22 2.17 16 18 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 19 C -0.13 -3.03 5.11 -25.19 -0.13 -3.16 16 20 C 0.17 4.56 5.47 -1.69 -0.01 4.55 16 21 N -0.59 -15.85 3.35 -163.27 -0.55 -16.39 16 22 C -0.22 -6.35 9.95 -15.06 -0.15 -6.50 16 23 H 0.08 2.12 7.31 -52.48 -0.38 1.74 16 24 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 25 N -0.92 -27.95 10.46 55.49 0.58 -27.37 16 26 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 N -0.26 -3.26 7.38 33.42 0.25 -3.01 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.55 7.99 -51.93 -0.41 0.13 16 37 H 0.07 0.23 7.27 -51.92 -0.38 -0.15 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.18 0.95 7.47 -52.48 -0.39 0.56 16 41 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.13 1.68 4.12 -70.92 -0.29 1.39 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 47 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 48 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.09 2.08 6.02 -51.93 -0.31 1.77 16 50 H 0.04 1.11 7.81 -51.93 -0.41 0.71 16 51 H 0.06 1.58 7.18 -51.93 -0.37 1.21 16 52 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -34.46 396.56 -9.77 -44.23 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.82 Total: -0.02 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.61 Total: 3.75 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.35 Total: -60.55 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.46 -9.77 -44.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049501237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.025 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds