Wall clock time and date at job start Wed Apr 1 2020 04:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46963 * 2 1 4 4 C 1.52987 * 109.47545 * 240.00180 * 2 1 3 5 5 N 1.46502 * 109.46888 * 119.99491 * 2 1 3 6 6 C 1.35032 * 124.88291 * 75.00826 * 5 2 1 7 7 C 1.35364 * 107.23286 * 180.02562 * 6 5 2 8 8 C 1.41503 * 105.49911 * 359.97438 * 7 6 5 9 9 C 1.47712 * 126.51636 * 179.97438 * 8 7 6 10 10 O 1.21569 * 120.00078 * 4.81879 * 9 8 7 11 11 N 1.34775 * 119.99815 * 184.81093 * 9 8 7 12 12 C 1.47846 * 122.23092 * 354.30039 * 11 9 8 13 13 C 1.52718 * 111.06464 * 232.45884 * 12 11 9 14 14 C 1.53868 * 111.52502 * 311.46844 * 13 12 11 15 15 C 1.51088 * 107.33287 * 56.92553 * 14 13 12 16 16 H 1.09000 * 108.73666 * 50.83878 * 15 14 13 17 17 C 1.45731 * 122.22604 * 174.27391 * 11 9 8 18 18 H 1.08993 * 111.07041 * 240.54765 * 17 11 9 19 19 C 1.53435 * 116.37095 * 9.92495 * 17 11 9 20 20 C 1.55468 * 101.67233 * 152.71442 * 19 17 11 21 21 N 1.45023 * 119.18665 * 176.09724 * 15 14 13 22 22 C 1.36930 * 126.56605 * 330.95594 * 21 15 14 23 23 H 1.08005 * 120.00223 * 0.02562 * 22 21 15 24 24 C 1.38819 * 120.00359 * 179.97438 * 22 21 15 25 25 N 1.31617 * 119.99594 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00139 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46797 * 90.00329 * 26 24 22 28 28 H 1.48500 * 109.47018 * 210.00378 * 26 24 22 29 29 H 1.48498 * 109.47142 * 330.00366 * 26 24 22 30 30 N 1.28464 * 124.88860 * 255.33056 * 5 2 1 31 31 H 1.09001 * 109.47451 * 299.99644 * 1 2 3 32 32 H 1.09002 * 109.47417 * 60.00171 * 1 2 3 33 33 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47253 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47155 * 300.00187 * 3 2 1 36 36 H 1.09001 * 109.46746 * 59.99924 * 3 2 1 37 37 H 1.09008 * 109.47088 * 299.99887 * 4 2 1 38 38 H 1.09000 * 109.47526 * 59.99642 * 4 2 1 39 39 H 1.08997 * 109.47595 * 179.97438 * 4 2 1 40 40 H 1.08010 * 126.38484 * 0.05064 * 6 5 2 41 41 H 1.07993 * 127.25048 * 180.02562 * 7 6 5 42 42 H 1.08997 * 109.16480 * 112.05107 * 12 11 9 43 43 H 1.09004 * 109.11832 * 352.83413 * 12 11 9 44 44 H 1.09003 * 109.06964 * 190.94350 * 13 12 11 45 45 H 1.08999 * 109.01665 * 71.96683 * 13 12 11 46 46 H 1.09001 * 109.88618 * 297.47047 * 14 13 12 47 47 H 1.08998 * 109.88477 * 176.38230 * 14 13 12 48 48 H 1.08996 * 110.98491 * 270.81223 * 19 17 11 49 49 H 1.09004 * 110.98249 * 34.62161 * 19 17 11 50 50 H 1.09002 * 109.96110 * 218.02404 * 20 19 17 51 51 H 1.09001 * 109.95890 * 96.78212 * 20 19 17 52 52 H 0.97006 * 119.99882 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2491 5 7 2.0182 -0.6905 1.1963 6 6 2.0055 -2.0289 1.3746 7 6 2.5350 -2.2758 2.5957 8 6 2.8624 -1.0069 3.1295 9 6 3.4710 -0.7386 4.4484 10 8 3.8200 -1.6633 5.1562 11 7 3.6395 0.5314 4.8669 12 6 3.3484 1.6927 3.9995 13 6 4.5409 2.6448 3.9384 14 6 5.0824 2.9622 5.3433 15 6 5.4396 1.6471 5.9957 16 1 6.0712 1.0780 5.3135 17 6 4.1202 0.8514 6.2049 18 1 3.3850 1.4381 6.7556 19 6 4.6497 -0.3234 7.0379 20 6 5.6654 0.3883 7.9754 21 7 6.0591 1.6533 7.3069 22 6 6.8591 2.6357 7.8265 23 1 7.0821 3.5161 7.2420 24 6 7.3826 2.5007 9.1051 25 7 7.1105 1.4281 9.8177 26 14 8.4745 3.8406 9.8136 27 1 7.6361 4.8346 10.5307 28 1 9.4465 3.2377 10.7607 29 1 9.2087 4.5145 8.7128 30 7 2.5147 -0.1095 2.2288 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6765 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7207 -1.2494 40 1 1.6411 -2.7653 0.6735 41 1 2.6782 -3.2386 3.0636 42 1 2.4842 2.2267 4.3945 43 1 3.1212 1.3390 2.9937 44 1 4.2312 3.5730 3.4581 45 1 5.3326 2.1850 3.3470 46 1 4.3171 3.4709 5.9295 47 1 5.9697 3.5905 5.2654 48 1 3.8478 -0.7877 7.6118 49 1 5.1499 -1.0565 6.4050 50 1 6.5417 -0.2431 8.1224 51 1 5.1970 0.6049 8.9355 52 1 7.4766 1.3335 10.7110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049501237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:04 Heat of formation + Delta-G solvation = 72.904842 kcal Electronic energy + Delta-G solvation = -32203.486590 eV Core-core repulsion = 28205.519863 eV Total energy + Delta-G solvation = -3997.966727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.74348 -41.54861 -39.19374 -37.68329 -36.94137 -34.29570 -33.90986 -31.94093 -31.87629 -30.61943 -29.63890 -28.32210 -28.22014 -26.71392 -26.27248 -24.36083 -23.06990 -22.84756 -22.11903 -21.41992 -20.60851 -20.11954 -18.64912 -17.95891 -17.22377 -17.15576 -17.03210 -16.64305 -16.22390 -15.83953 -15.49246 -15.39666 -15.19916 -15.01845 -14.67214 -14.52238 -14.34641 -14.24729 -14.00696 -13.80619 -13.42459 -13.21816 -13.19520 -13.14730 -13.03927 -12.90440 -12.70758 -12.68007 -12.44345 -12.32816 -12.14665 -12.06191 -11.96556 -11.82503 -11.74922 -11.67482 -11.46414 -11.02218 -10.77797 -10.48979 -10.18381 -10.01855 -9.54222 -8.91789 -7.83809 -5.21239 0.56038 1.24331 1.44468 1.45736 1.48567 1.56908 2.00511 2.38657 2.50749 3.21454 3.34182 3.38105 3.62115 3.77966 3.86503 3.89638 3.93887 3.98516 4.07492 4.09785 4.22457 4.29277 4.31087 4.56003 4.57437 4.64035 4.65834 4.66401 4.70612 4.74980 4.78431 4.81290 4.88307 4.89395 4.91146 5.02352 5.03757 5.07328 5.12355 5.17886 5.24751 5.28967 5.32138 5.39074 5.46191 5.47822 5.58626 5.64762 5.74318 6.04574 6.17531 6.46290 6.92843 7.05021 7.21550 7.74667 8.45599 9.28223 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.002726 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.850187 B =10268.902584 C =11162.210648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 C -0.151 4.151 4 C -0.157 4.157 5 N -0.266 5.266 6 C 0.004 3.996 7 C -0.202 4.202 8 C -0.041 4.041 9 C 0.594 3.406 10 O -0.567 6.567 11 N -0.589 5.589 12 C 0.084 3.916 13 C -0.114 4.114 14 C -0.110 4.110 15 C 0.155 3.845 16 H -0.006 1.006 17 C 0.130 3.870 18 H 0.082 0.918 19 C -0.118 4.118 20 C 0.185 3.815 21 N -0.611 5.611 22 C -0.234 4.234 23 H 0.089 0.911 24 C -0.070 4.070 25 N -0.955 5.955 26 Si 0.982 3.018 27 H -0.283 1.283 28 H -0.297 1.297 29 H -0.267 1.267 30 N -0.261 5.261 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.056 0.944 40 H 0.220 0.780 41 H 0.158 0.842 42 H 0.072 0.928 43 H 0.142 0.858 44 H 0.110 0.890 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.000 1.000 51 H 0.028 0.972 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.658 -1.673 -29.120 34.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.077 3.923 3 C -0.208 4.208 4 C -0.215 4.215 5 N -0.055 5.055 6 C -0.139 4.139 7 C -0.230 4.230 8 C -0.199 4.199 9 C 0.382 3.618 10 O -0.445 6.445 11 N -0.320 5.320 12 C -0.037 4.037 13 C -0.153 4.153 14 C -0.148 4.148 15 C 0.047 3.953 16 H 0.011 0.989 17 C 0.025 3.975 18 H 0.100 0.900 19 C -0.156 4.156 20 C 0.060 3.940 21 N -0.336 5.336 22 C -0.363 4.363 23 H 0.107 0.893 24 C -0.263 4.263 25 N -0.604 5.604 26 Si 0.810 3.190 27 H -0.209 1.209 28 H -0.224 1.224 29 H -0.192 1.192 30 N -0.097 5.097 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.075 0.925 40 H 0.236 0.764 41 H 0.175 0.825 42 H 0.090 0.910 43 H 0.159 0.841 44 H 0.128 0.872 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.019 0.981 51 H 0.047 0.953 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.416 -0.907 -28.906 33.760 hybrid contribution 1.115 -0.607 1.673 2.100 sum -16.301 -1.514 -27.233 31.775 Atomic orbital electron populations 1.22259 0.90761 1.04082 1.04262 1.21501 0.96089 0.94122 0.80598 1.22040 1.01725 0.92690 1.04389 1.22269 1.01851 1.01973 0.95361 1.46481 1.40828 1.05341 1.12864 1.23198 1.04947 0.86786 0.98967 1.21918 1.06582 0.98054 0.96450 1.21746 1.09386 0.93150 0.95600 1.17480 0.77644 0.82103 0.84543 1.90735 1.52151 1.44917 1.56701 1.47874 1.64294 1.06105 1.13723 1.22679 0.97430 0.85703 0.97914 1.21841 0.97573 1.00409 0.95474 1.21411 1.00786 0.96156 0.96486 1.20888 0.91244 0.96215 0.86952 0.98884 1.22079 0.95435 0.96844 0.83166 0.90033 1.22788 0.98585 0.96633 0.97624 1.21431 0.93511 0.85570 0.93518 1.44348 1.56214 1.19397 1.13620 1.19425 1.21114 0.97973 0.97751 0.89341 1.25735 1.02755 1.00273 0.97529 1.70190 1.49841 1.29321 1.11067 0.85024 0.77961 0.78030 0.77987 1.20938 1.22361 1.19174 1.73036 1.15106 1.25363 0.96234 0.92983 0.87434 0.90804 0.92604 0.87799 0.91850 0.90015 0.87338 0.92503 0.76351 0.82461 0.90966 0.84113 0.87202 0.92715 0.91567 0.92266 0.91600 0.90619 0.98146 0.95336 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.70 71.98 0.63 -0.20 16 2 C 0.16 1.32 1.21 3.60 0.00 1.33 16 3 C -0.15 -1.34 8.01 71.98 0.58 -0.76 16 4 C -0.16 -0.60 8.27 71.98 0.60 0.00 16 5 N -0.27 -4.34 3.16 -307.74 -0.97 -5.32 16 6 C 0.00 0.07 10.52 83.54 0.88 0.95 16 7 C -0.20 -4.86 10.81 22.41 0.24 -4.62 16 8 C -0.04 -1.23 6.93 42.46 0.29 -0.93 16 9 C 0.59 22.40 7.72 86.75 0.67 23.07 16 10 O -0.57 -25.13 13.65 -3.93 -0.05 -25.19 16 11 N -0.59 -21.27 2.91 -794.67 -2.31 -23.59 16 12 C 0.08 2.33 6.21 86.03 0.53 2.86 16 13 C -0.11 -3.11 5.92 30.79 0.18 -2.93 16 14 C -0.11 -3.99 5.46 30.26 0.17 -3.82 16 15 C 0.16 7.12 2.58 45.50 0.12 7.23 16 16 H -0.01 -0.31 8.04 -2.39 -0.02 -0.33 16 17 C 0.13 5.52 3.33 46.14 0.15 5.67 16 18 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 19 C -0.12 -5.65 5.11 31.59 0.16 -5.49 16 20 C 0.18 10.43 5.47 86.86 0.48 10.91 16 21 N -0.61 -34.09 3.35 -670.47 -2.25 -36.34 16 22 C -0.23 -13.65 9.95 84.04 0.84 -12.81 16 23 H 0.09 4.85 7.31 -2.91 -0.02 4.83 16 24 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 25 N -0.96 -60.73 10.46 21.65 0.23 -60.50 16 26 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 27 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 28 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 30 N -0.26 -6.14 7.38 -48.17 -0.36 -6.49 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.06 0.74 7.99 -2.39 -0.02 0.72 16 37 H 0.08 0.12 7.27 -2.38 -0.02 0.11 16 38 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.22 1.30 7.47 -2.91 -0.02 1.28 16 41 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.14 3.53 4.12 -26.95 -0.11 3.42 16 44 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 46 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 47 H 0.06 2.21 7.70 -2.39 -0.02 2.19 16 48 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 49 H 0.08 3.84 6.02 -2.38 -0.01 3.83 16 50 H 0.00 0.02 7.81 -2.39 -0.02 0.00 16 51 H 0.03 1.74 7.18 -2.39 -0.02 1.72 16 52 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -80.94 396.56 4.09 -76.85 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.80 Total: 14.39 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.98 Total: 16.73 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -5.66 Total: -132.24 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -80.94 4.09 -76.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049501237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.754 kcal (2) G-P(sol) polarization free energy of solvation -80.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds