Wall clock time and date at job start Wed Apr 1 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47407 * 2 1 4 4 C 1.53004 * 109.46853 * 239.99730 * 2 1 3 5 5 N 1.46502 * 109.47373 * 120.00110 * 2 1 3 6 6 C 1.35037 * 124.88333 * 74.99304 * 5 2 1 7 7 C 1.35370 * 107.22765 * 180.02562 * 6 5 2 8 8 C 1.41504 * 105.50349 * 0.02562 * 7 6 5 9 9 C 1.47701 * 126.51878 * 179.97438 * 8 7 6 10 10 O 1.21574 * 120.00237 * 353.08086 * 9 8 7 11 11 N 1.34773 * 120.00348 * 173.08316 * 9 8 7 12 12 C 1.45730 * 117.76441 * 182.22651 * 11 9 8 13 13 C 1.53380 * 109.38071 * 141.01994 * 12 11 9 14 14 C 1.52940 * 108.38320 * 54.09256 * 13 12 11 15 15 C 1.52933 * 109.79615 * 293.86927 * 14 13 12 16 16 H 1.08995 * 111.26429 * 293.35694 * 15 14 13 17 17 C 1.44195 * 117.75642 * 2.49591 * 11 9 8 18 18 H 1.09001 * 109.22572 * 332.58423 * 17 11 9 19 19 C 1.54071 * 111.76225 * 93.48130 * 17 11 9 20 20 C 1.54053 * 103.74507 * 153.24768 * 19 17 11 21 21 N 1.46890 * 107.70801 * 342.87733 * 20 19 17 22 22 C 1.36936 * 125.58158 * 177.06357 * 21 20 19 23 23 H 1.07999 * 120.00148 * 179.97438 * 22 21 20 24 24 C 1.38819 * 120.00055 * 359.96275 * 22 21 20 25 25 N 1.31621 * 119.99696 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99933 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47345 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47030 * 120.00593 * 26 24 22 29 29 H 1.48493 * 109.47274 * 240.00250 * 26 24 22 30 30 N 1.28466 * 124.88747 * 255.31326 * 5 2 1 31 31 H 1.09004 * 109.46763 * 299.99934 * 1 2 3 32 32 H 1.08996 * 109.47383 * 59.99474 * 1 2 3 33 33 H 1.09003 * 109.47599 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47001 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46930 * 299.99916 * 3 2 1 36 36 H 1.08996 * 109.46841 * 60.00027 * 3 2 1 37 37 H 1.09001 * 109.47362 * 299.99983 * 4 2 1 38 38 H 1.08996 * 109.46857 * 60.00624 * 4 2 1 39 39 H 1.09007 * 109.46766 * 180.02562 * 4 2 1 40 40 H 1.07997 * 126.38812 * 0.07420 * 6 5 2 41 41 H 1.07994 * 127.24302 * 179.97438 * 7 6 5 42 42 H 1.08997 * 109.46095 * 261.16778 * 12 11 9 43 43 H 1.09003 * 109.45475 * 21.11597 * 12 11 9 44 44 H 1.09000 * 109.79498 * 294.36554 * 13 12 11 45 45 H 1.08990 * 109.74423 * 173.79398 * 13 12 11 46 46 H 1.09000 * 109.41677 * 173.77625 * 14 13 12 47 47 H 1.08997 * 109.36684 * 53.93309 * 14 13 12 48 48 H 1.09008 * 110.56988 * 271.80855 * 19 17 11 49 49 H 1.08995 * 110.57432 * 34.53201 * 19 17 11 50 50 H 1.09005 * 109.81387 * 102.42042 * 20 19 17 51 51 H 1.08994 * 109.81443 * 223.32058 * 20 19 17 52 52 H 0.97003 * 119.99821 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0054 -2.0291 1.3745 7 6 2.5351 -2.2760 2.5956 8 6 2.8617 -1.0070 3.1298 9 6 3.4702 -0.7387 4.4486 10 8 3.6237 -1.6460 5.2432 11 7 3.8552 0.5118 4.7713 12 6 4.4949 0.7126 6.0652 13 6 5.6351 1.7278 5.9173 14 6 5.0711 2.9962 5.2752 15 6 4.6271 2.6981 3.8425 16 1 5.4792 2.4593 3.2061 17 6 3.6005 1.5607 3.8151 18 1 3.5801 1.1347 2.8120 19 6 2.2616 2.2715 4.0900 20 6 2.4690 3.6817 3.5055 21 7 3.9132 3.8846 3.3299 22 6 4.5012 4.9929 2.7813 23 1 5.5764 5.0474 2.6960 24 6 3.7152 6.0463 2.3346 25 7 2.4048 5.9800 2.4389 26 14 4.5173 7.5579 1.5856 27 1 5.9923 7.3855 1.5826 28 1 4.0371 7.7336 0.1913 29 1 4.1602 8.7561 2.3867 30 7 2.5152 -0.1097 2.2286 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6765 -1.7490 -1.2492 38 1 1.6766 -0.2075 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 1.6411 -2.7654 0.6734 41 1 2.6776 -3.2387 3.0637 42 1 3.7612 1.0871 6.7789 43 1 4.8973 -0.2355 6.4223 44 1 6.4184 1.3133 5.2827 45 1 6.0460 1.9656 6.8983 46 1 5.8400 3.7687 5.2628 47 1 4.2162 3.3451 5.8543 48 1 1.4451 1.7614 3.5788 49 1 2.0683 2.3233 5.1615 50 1 1.9652 3.7600 2.5420 51 1 2.0718 4.4286 4.1927 52 1 1.8556 6.7163 2.1271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049501239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:10 Heat of formation + Delta-G solvation = 87.119631 kcal Electronic energy + Delta-G solvation = -33378.454924 eV Core-core repulsion = 29381.104597 eV Total energy + Delta-G solvation = -3997.350327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.70552 -40.06389 -37.89389 -36.82188 -34.94061 -33.06099 -32.02379 -30.83978 -30.48590 -28.89784 -28.22423 -27.69146 -27.29092 -25.12662 -24.40148 -23.20492 -22.08084 -21.38053 -20.25544 -19.93005 -19.55225 -18.25212 -17.17065 -16.61013 -16.51747 -15.96043 -15.51451 -14.84508 -14.70339 -14.44624 -14.31973 -13.89856 -13.89119 -13.70527 -13.56673 -13.25055 -13.14828 -12.77967 -12.59992 -12.46248 -12.35707 -12.06945 -11.97033 -11.89993 -11.82728 -11.46311 -11.28040 -11.20048 -10.97287 -10.90788 -10.72893 -10.58529 -10.43129 -10.34689 -10.05221 -9.97864 -9.73401 -9.59966 -9.35828 -8.95146 -8.91597 -8.57993 -8.12251 -6.82066 -5.69899 -3.03269 1.80072 2.25202 2.44349 3.36820 3.39154 3.45420 3.46702 3.66165 4.23579 4.47930 4.53943 4.66861 4.67632 4.78098 5.08283 5.20154 5.26535 5.33984 5.38109 5.41522 5.47232 5.51909 5.52990 5.57595 5.67453 5.70051 5.71477 5.74106 5.79768 5.82166 5.83851 5.98020 6.01800 6.05994 6.20909 6.27434 6.33812 6.41584 6.43071 6.49208 6.55049 6.67497 6.70112 6.84504 7.00283 7.10747 7.21933 7.60633 7.67254 7.73782 7.86107 8.11979 8.27423 8.50589 9.23564 9.83331 10.49636 11.40819 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.005096 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.815415 B = 5492.792887 C = 7879.684306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 C -0.148 4.148 4 C -0.157 4.157 5 N -0.273 5.273 6 C -0.022 4.022 7 C -0.182 4.182 8 C -0.023 4.023 9 C 0.595 3.405 10 O -0.550 6.550 11 N -0.574 5.574 12 C 0.116 3.884 13 C -0.130 4.130 14 C -0.131 4.131 15 C 0.161 3.839 16 H 0.051 0.949 17 C 0.112 3.888 18 H 0.129 0.871 19 C -0.144 4.144 20 C 0.185 3.815 21 N -0.594 5.594 22 C -0.221 4.221 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.908 3.092 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 N -0.233 5.233 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.174 0.826 41 H 0.157 0.843 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.050 0.950 50 H 0.051 0.949 51 H 0.036 0.964 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -14.825 -4.604 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.085 3.915 3 C -0.205 4.205 4 C -0.215 4.215 5 N -0.062 5.062 6 C -0.165 4.165 7 C -0.210 4.210 8 C -0.182 4.182 9 C 0.382 3.618 10 O -0.427 6.427 11 N -0.304 5.304 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.171 4.171 15 C 0.052 3.948 16 H 0.069 0.931 17 C 0.006 3.994 18 H 0.146 0.854 19 C -0.184 4.184 20 C 0.060 3.940 21 N -0.318 5.318 22 C -0.349 4.349 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.568 5.568 26 Si 0.739 3.261 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 N -0.068 5.068 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.191 0.809 41 H 0.175 0.825 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.054 0.946 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.412 -13.825 -4.604 14.770 hybrid contribution 0.257 0.127 -0.236 0.371 sum -2.155 -13.698 -4.840 14.687 Atomic orbital electron populations 1.22233 0.92355 1.02904 1.04098 1.21100 0.94960 0.94574 0.80894 1.21990 1.02622 0.91503 1.04394 1.22225 1.02553 1.00694 0.96073 1.46155 1.42064 1.04684 1.13282 1.22679 1.07394 0.86620 0.99761 1.21660 1.05814 0.98491 0.95060 1.21921 1.08381 0.91571 0.96318 1.17161 0.77693 0.82639 0.84314 1.90724 1.56990 1.44568 1.50393 1.46995 1.57730 1.07462 1.18186 1.21398 0.94934 1.00244 0.84092 1.21897 0.97275 0.96642 1.01105 1.22116 1.00793 0.95806 0.98390 1.20928 0.93542 0.87413 0.92911 0.93089 1.21968 0.95759 0.88097 0.93533 0.85410 1.22914 0.96559 0.98971 0.99957 1.20993 0.84951 0.89161 0.98939 1.44481 1.01419 1.14888 1.71009 1.19055 0.91271 0.92693 1.31921 0.90531 1.24749 0.95542 0.98368 1.01617 1.69990 1.02606 1.31834 1.52357 0.86105 0.78291 0.83170 0.78573 1.20585 1.21887 1.21869 1.73799 1.12997 1.24784 0.95255 0.91125 0.90006 0.91909 0.91306 0.90700 0.89691 0.91660 0.89794 0.91320 0.80862 0.82526 0.92130 0.89571 0.91862 0.91213 0.92059 0.92031 0.92125 0.93145 0.93099 0.94604 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.70 37.15 0.32 -1.09 16 2 C 0.17 1.75 1.21 -131.82 -0.16 1.59 16 3 C -0.15 -1.94 8.01 37.16 0.30 -1.64 16 4 C -0.16 -1.22 8.27 37.16 0.31 -0.91 16 5 N -0.27 -3.52 3.16 -48.62 -0.15 -3.67 16 6 C -0.02 -0.25 10.52 -17.16 -0.18 -0.43 16 7 C -0.18 -2.49 10.81 -39.36 -0.43 -2.91 16 8 C -0.02 -0.38 6.76 -82.77 -0.56 -0.94 16 9 C 0.60 10.83 7.60 -12.40 -0.09 10.73 16 10 O -0.55 -10.83 16.17 5.30 0.09 -10.74 16 11 N -0.57 -10.13 2.79 -168.53 -0.47 -10.61 16 12 C 0.12 1.83 6.25 -4.26 -0.03 1.80 16 13 C -0.13 -1.97 6.12 -26.57 -0.16 -2.13 16 14 C -0.13 -2.42 5.31 -26.80 -0.14 -2.57 16 15 C 0.16 3.31 3.29 -67.21 -0.22 3.09 16 16 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 17 C 0.11 2.10 2.30 -68.48 -0.16 1.95 16 18 H 0.13 2.49 4.43 -75.41 -0.33 2.16 16 19 C -0.14 -2.88 6.30 -25.62 -0.16 -3.04 16 20 C 0.18 4.40 5.39 -3.28 -0.02 4.38 16 21 N -0.59 -14.50 2.94 -163.74 -0.48 -14.98 16 22 C -0.22 -5.92 10.27 -15.06 -0.15 -6.07 16 23 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 25 N -0.92 -26.12 10.29 55.49 0.57 -25.55 16 26 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 N -0.23 -3.72 6.44 33.42 0.22 -3.51 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.38 7.99 -51.93 -0.42 0.96 16 37 H 0.06 0.40 7.27 -51.93 -0.38 0.02 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.17 1.28 7.47 -52.49 -0.39 0.88 16 41 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.33 6.99 -51.93 -0.36 0.97 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.06 1.22 8.01 -51.93 -0.42 0.81 16 48 H 0.06 1.17 7.48 -51.92 -0.39 0.78 16 49 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 50 H 0.05 1.32 7.25 -51.93 -0.38 0.94 16 51 H 0.04 0.96 7.60 -51.93 -0.39 0.56 16 52 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 399.80 15.07 6.02 6.02 Total: -1.00 -31.34 399.80 -9.78 -41.13 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.92 Total: 3.77 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.63 Total: 1.53 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.32 Total: -58.31 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.34 -9.78 -41.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049501239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.247 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds