Wall clock time and date at job start Wed Apr 1 2020 04:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46965 * 2 1 4 4 C 1.52991 * 109.47369 * 239.99754 * 2 1 3 5 5 N 1.46505 * 109.47007 * 119.99600 * 2 1 3 6 6 C 1.35032 * 124.88065 * 75.00086 * 5 2 1 7 7 C 1.35365 * 107.22522 * 179.97438 * 6 5 2 8 8 C 1.41500 * 105.50490 * 0.02562 * 7 6 5 9 9 C 1.47709 * 126.51824 * 179.97438 * 8 7 6 10 10 O 1.21574 * 120.00002 * 5.41345 * 9 8 7 11 11 N 1.34779 * 120.00039 * 185.41865 * 9 8 7 12 12 C 1.47854 * 122.22721 * 354.45990 * 11 9 8 13 13 C 1.52723 * 111.11569 * 127.58804 * 12 11 9 14 14 C 1.53878 * 111.51833 * 48.40387 * 13 12 11 15 15 C 1.51083 * 107.40341 * 303.19018 * 14 13 12 16 16 H 1.09000 * 108.73604 * 308.49319 * 15 14 13 17 17 C 1.45727 * 122.22808 * 174.48367 * 11 9 8 18 18 H 1.08995 * 111.06345 * 119.46126 * 17 11 9 19 19 C 1.53431 * 116.37842 * 350.08720 * 17 11 9 20 20 C 1.55465 * 101.66978 * 207.26978 * 19 17 11 21 21 N 1.45023 * 119.18401 * 183.84925 * 15 14 13 22 22 C 1.36937 * 126.56424 * 28.81381 * 21 15 14 23 23 H 1.07997 * 119.99658 * 0.02562 * 22 21 15 24 24 C 1.38807 * 120.00114 * 180.02562 * 22 21 15 25 25 N 1.31617 * 120.00434 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99810 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47288 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47334 * 119.99902 * 26 24 22 29 29 H 1.48504 * 109.47042 * 239.99911 * 26 24 22 30 30 N 1.28466 * 124.88371 * 255.24955 * 5 2 1 31 31 H 1.09003 * 109.47482 * 300.00340 * 1 2 3 32 32 H 1.09007 * 109.47144 * 60.00550 * 1 2 3 33 33 H 1.09004 * 109.47403 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47446 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47260 * 299.99593 * 3 2 1 36 36 H 1.09003 * 109.47298 * 59.99547 * 3 2 1 37 37 H 1.08995 * 109.47470 * 300.00434 * 4 2 1 38 38 H 1.09007 * 109.47126 * 60.00297 * 4 2 1 39 39 H 1.09004 * 109.47174 * 179.97438 * 4 2 1 40 40 H 1.07996 * 126.38917 * 359.94539 * 6 5 2 41 41 H 1.08001 * 127.24486 * 179.97438 * 7 6 5 42 42 H 1.09002 * 109.15511 * 247.94613 * 12 11 9 43 43 H 1.08994 * 109.15935 * 7.18031 * 12 11 9 44 44 H 1.08994 * 109.00940 * 287.92257 * 13 12 11 45 45 H 1.08995 * 109.13548 * 168.97080 * 13 12 11 46 46 H 1.08993 * 109.88398 * 183.69189 * 14 13 12 47 47 H 1.09001 * 109.87985 * 62.68287 * 14 13 12 48 48 H 1.08992 * 110.99062 * 325.37080 * 19 17 11 49 49 H 1.09006 * 110.98192 * 89.17739 * 19 17 11 50 50 H 1.09006 * 109.96137 * 141.98411 * 20 19 17 51 51 H 1.09000 * 109.96809 * 263.18326 * 20 19 17 52 52 H 0.96991 * 120.00733 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 2.0183 -0.6906 1.1963 6 6 2.0054 -2.0290 1.3746 7 6 2.5360 -2.2759 2.5952 8 6 2.8631 -1.0069 3.1292 9 6 3.4726 -0.7387 4.4476 10 8 3.8327 -1.6631 5.1503 11 7 3.6295 0.5310 4.8717 12 6 3.3210 1.6934 4.0116 13 6 2.3786 2.6658 4.7179 14 6 2.8587 2.9805 6.1456 15 6 2.9768 1.6669 6.8826 16 1 2.0424 1.1171 6.7701 17 6 4.1149 0.8495 6.2084 18 1 5.0417 1.4213 6.1626 19 6 4.2175 -0.3222 7.1935 20 6 4.0421 0.3991 8.5595 21 7 3.3334 1.6742 8.2882 22 6 3.0669 2.6676 9.1923 23 1 2.5400 3.5565 8.8781 24 6 3.4738 2.5321 10.5124 25 7 4.1154 1.4487 10.8955 26 14 3.1095 3.8870 11.7458 27 1 2.3820 4.9903 11.0687 28 1 2.2728 3.3433 12.8456 29 1 4.3848 4.4046 12.3035 30 7 2.5161 -0.1096 2.2282 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2493 40 1 1.6395 -2.7652 0.6743 41 1 2.6788 -3.2386 3.0633 42 1 4.2477 2.2112 3.7642 43 1 2.8505 1.3437 3.0928 44 1 1.3835 2.2238 4.7662 45 1 2.3280 3.5927 4.1468 46 1 2.1349 3.6230 6.6469 47 1 3.8299 3.4741 6.1097 48 1 3.4173 -1.0434 7.0272 49 1 5.1938 -0.8027 7.1283 50 1 3.4497 -0.2196 9.2337 51 1 5.0177 0.6016 9.0015 52 1 4.3995 1.3538 11.8180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049501242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:20 Heat of formation + Delta-G solvation = 92.246981 kcal Electronic energy + Delta-G solvation = -32249.079959 eV Core-core repulsion = 28251.951970 eV Total energy + Delta-G solvation = -3997.127989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.87595 -39.99404 -37.71134 -37.00466 -35.27122 -32.48862 -32.21284 -31.04704 -30.78656 -28.78954 -28.03630 -27.98261 -27.76084 -25.22155 -24.36339 -23.16835 -22.01764 -21.33878 -20.56072 -19.96610 -19.49255 -18.81945 -17.26024 -16.63142 -16.22031 -16.02743 -15.46985 -14.94650 -14.74829 -14.61383 -14.28136 -14.18249 -14.03681 -13.80217 -13.60191 -13.37491 -13.09685 -12.94929 -12.80201 -12.66956 -12.54085 -12.33091 -12.29356 -12.11683 -11.78332 -11.70731 -11.63922 -11.50063 -11.20358 -10.83565 -10.79144 -10.48298 -10.35704 -10.08666 -9.94862 -9.74576 -9.72719 -9.53049 -9.31686 -9.12575 -9.03542 -8.52412 -8.04552 -6.73929 -5.62505 -2.96264 1.62928 2.13388 2.17690 3.33391 3.44966 3.49903 3.52550 3.67610 3.90645 4.18319 4.28566 4.50808 4.56499 4.58196 4.88357 4.91918 5.04879 5.08436 5.15222 5.17434 5.25454 5.27591 5.33768 5.42077 5.48900 5.53552 5.61652 5.63086 5.64534 5.68766 5.74661 5.77737 5.86444 5.97948 6.02683 6.17668 6.25301 6.33541 6.42762 6.48806 6.54416 6.66836 6.77164 6.84338 6.97401 7.01064 7.31287 7.66996 7.74090 7.80624 7.91489 7.96306 8.33174 8.57798 9.27385 9.91212 10.60314 11.49696 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.002774 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.416676 B =10089.889910 C =10960.157993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.159 4.159 5 N -0.278 5.278 6 C -0.018 4.018 7 C -0.179 4.179 8 C -0.005 4.005 9 C 0.600 3.400 10 O -0.527 6.527 11 N -0.585 5.585 12 C 0.082 3.918 13 C -0.125 4.125 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.017 0.983 17 C 0.117 3.883 18 H 0.080 0.920 19 C -0.128 4.128 20 C 0.173 3.827 21 N -0.593 5.593 22 C -0.223 4.223 23 H 0.079 0.921 24 C -0.009 4.009 25 N -0.920 5.920 26 Si 0.909 3.091 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.291 1.291 30 N -0.259 5.259 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.057 0.943 43 H 0.129 0.871 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.039 0.961 51 H 0.056 0.944 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 -3.198 -28.555 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.217 4.217 5 N -0.067 5.067 6 C -0.161 4.161 7 C -0.207 4.207 8 C -0.165 4.165 9 C 0.386 3.614 10 O -0.402 6.402 11 N -0.317 5.317 12 C -0.042 4.042 13 C -0.164 4.164 14 C -0.155 4.155 15 C 0.050 3.950 16 H 0.034 0.966 17 C 0.013 3.987 18 H 0.098 0.902 19 C -0.166 4.166 20 C 0.048 3.952 21 N -0.318 5.318 22 C -0.351 4.351 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.567 5.567 26 Si 0.740 3.260 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 N -0.094 5.094 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.057 0.943 51 H 0.075 0.925 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.639 -2.462 -28.249 28.911 hybrid contribution -0.218 -0.111 0.842 0.877 sum -5.857 -2.573 -27.407 28.143 Atomic orbital electron populations 1.22257 0.92267 1.03435 1.03849 1.21015 0.95040 0.94058 0.81370 1.21993 1.02501 0.92515 1.03659 1.22229 1.02565 1.01094 0.95794 1.45988 1.42919 1.04784 1.12965 1.22671 1.07239 0.86355 0.99861 1.21754 1.05256 0.98814 0.94905 1.22181 1.06737 0.91452 0.96113 1.16947 0.78498 0.82646 0.83339 1.90795 1.50657 1.43730 1.55058 1.47821 1.63800 1.04885 1.15190 1.22498 0.99392 0.86689 0.95584 1.21858 0.99298 0.98489 0.96724 1.21443 1.01442 0.98717 0.93859 1.20755 0.94637 0.93714 0.85909 0.96560 1.22419 0.97796 0.98455 0.80024 0.90223 1.22912 1.02211 0.96146 0.95360 1.21739 0.97448 0.85251 0.90756 1.44113 1.66625 1.18571 1.02509 1.19038 1.30732 0.96559 0.88767 0.90357 1.24798 1.00794 0.97758 0.97168 1.69957 1.43768 1.26637 1.16383 0.86081 0.77364 0.81022 0.81518 1.20586 1.21848 1.21842 1.73160 1.15082 1.25341 0.95820 0.91212 0.90049 0.91551 0.91285 0.90565 0.90523 0.91342 0.89823 0.91268 0.80701 0.82205 0.92421 0.85399 0.92250 0.91319 0.91708 0.91901 0.90440 0.91869 0.94297 0.92532 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.70 37.15 0.32 -0.48 16 2 C 0.17 1.02 1.21 -131.82 -0.16 0.87 16 3 C -0.15 -0.90 8.01 37.16 0.30 -0.60 16 4 C -0.16 -0.64 8.27 37.15 0.31 -0.33 16 5 N -0.28 -2.68 3.16 -48.62 -0.15 -2.83 16 6 C -0.02 -0.17 10.52 -17.17 -0.18 -0.35 16 7 C -0.18 -2.25 10.81 -39.36 -0.43 -2.67 16 8 C 0.00 -0.08 6.93 -82.77 -0.57 -0.65 16 9 C 0.60 11.02 7.64 -12.39 -0.09 10.93 16 10 O -0.53 -11.09 13.93 5.30 0.07 -11.01 16 11 N -0.59 -10.49 2.91 -165.14 -0.48 -10.97 16 12 C 0.08 1.19 6.30 -3.44 -0.02 1.17 16 13 C -0.12 -1.82 5.94 -26.42 -0.16 -1.98 16 14 C -0.12 -2.14 5.45 -27.24 -0.15 -2.29 16 15 C 0.16 3.53 2.57 -68.36 -0.18 3.35 16 16 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 17 C 0.12 2.42 3.32 -66.80 -0.22 2.19 16 18 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 19 C -0.13 -2.87 4.93 -25.20 -0.12 -3.00 16 20 C 0.17 4.53 5.47 -1.69 -0.01 4.52 16 21 N -0.59 -15.80 3.35 -163.29 -0.55 -16.35 16 22 C -0.22 -6.32 9.94 -15.06 -0.15 -6.47 16 23 H 0.08 2.14 7.31 -52.49 -0.38 1.75 16 24 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 25 N -0.92 -27.88 10.46 55.49 0.58 -27.30 16 26 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 N -0.26 -3.28 7.36 33.42 0.25 -3.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.56 7.99 -51.93 -0.42 0.14 16 37 H 0.07 0.22 7.27 -51.93 -0.38 -0.15 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.18 0.96 7.47 -52.49 -0.39 0.57 16 41 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.13 1.72 3.94 -84.22 -0.33 1.39 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.23 7.70 -51.93 -0.40 0.83 16 47 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 48 H 0.08 1.82 6.39 -51.93 -0.33 1.48 16 49 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 50 H 0.04 1.11 7.81 -51.93 -0.41 0.71 16 51 H 0.06 1.60 7.19 -51.93 -0.37 1.23 16 52 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -34.41 396.85 -9.81 -44.23 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.88 Total: -0.14 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.61 Total: 3.86 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.36 Total: -60.48 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.41 -9.81 -44.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049501242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.473 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds