Wall clock time and date at job start Wed Apr 1 2020 04:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47074 * 2 1 4 4 C 1.52999 * 109.47338 * 120.00505 * 2 1 3 5 5 N 1.46505 * 109.47020 * 175.45553 * 4 2 1 6 6 N 1.28443 * 125.18534 * 278.66387 * 5 4 2 7 7 C 1.30867 * 110.92389 * 179.97438 * 6 5 4 8 8 C 1.39675 * 107.86243 * 359.97438 * 7 6 5 9 9 C 1.36596 * 125.18843 * 98.62474 * 5 4 2 10 10 C 1.47159 * 126.88708 * 359.77300 * 9 5 4 11 11 O 1.21631 * 119.99893 * 335.12408 * 10 9 5 12 12 N 1.34775 * 120.00204 * 155.12202 * 10 9 5 13 13 C 1.47860 * 122.22511 * 0.97516 * 12 10 9 14 14 C 1.52715 * 111.05171 * 232.46569 * 13 12 10 15 15 C 1.53874 * 111.52661 * 311.45869 * 14 13 12 16 16 C 1.51079 * 107.34216 * 56.93392 * 15 14 13 17 17 H 1.08997 * 108.73668 * 51.46741 * 16 15 14 18 18 C 1.45728 * 122.22961 * 180.68056 * 12 10 9 19 19 H 1.09000 * 111.06585 * 240.55283 * 18 12 10 20 20 C 1.53315 * 115.80339 * 10.53248 * 18 12 10 21 21 C 1.55475 * 101.34986 * 153.07163 * 20 18 12 22 22 N 1.45019 * 119.19581 * 176.74175 * 16 15 14 23 23 C 1.36938 * 126.56121 * 331.18583 * 22 16 15 24 24 H 1.08000 * 119.99915 * 5.38278 * 23 22 16 25 25 C 1.38815 * 120.00111 * 185.38188 * 23 22 16 26 26 N 1.31619 * 119.99825 * 5.40062 * 25 23 22 27 27 Si 1.86792 * 120.00220 * 185.40282 * 25 23 22 28 28 H 1.48501 * 109.47493 * 94.99379 * 27 25 23 29 29 H 1.48497 * 109.47496 * 215.00084 * 27 25 23 30 30 H 1.48509 * 109.47012 * 334.99902 * 27 25 23 31 31 H 1.08999 * 109.46758 * 295.03433 * 1 2 3 32 32 H 1.08996 * 109.47189 * 55.02699 * 1 2 3 33 33 H 1.08996 * 109.46952 * 175.02964 * 1 2 3 34 34 H 1.09006 * 109.47250 * 240.00723 * 2 1 3 35 35 H 1.09000 * 109.46638 * 62.94007 * 3 2 1 36 36 H 1.09002 * 109.46622 * 182.93179 * 3 2 1 37 37 H 1.08993 * 109.47325 * 302.93471 * 3 2 1 38 38 H 1.08998 * 109.47105 * 55.45046 * 4 2 1 39 39 H 1.09000 * 109.46679 * 295.45504 * 4 2 1 40 40 H 1.07996 * 126.06908 * 180.02562 * 7 6 5 41 41 H 1.08000 * 127.32365 * 180.02562 * 8 7 6 42 42 H 1.09003 * 109.16086 * 352.86956 * 13 12 10 43 43 H 1.09002 * 109.16057 * 112.05798 * 13 12 10 44 44 H 1.08996 * 109.07409 * 71.98673 * 14 13 12 45 45 H 1.09003 * 109.06645 * 191.00200 * 14 13 12 46 46 H 1.08991 * 109.88182 * 176.39711 * 15 14 13 47 47 H 1.09003 * 109.87806 * 297.47922 * 15 14 13 48 48 H 1.09000 * 111.70867 * 34.84028 * 20 18 12 49 49 H 1.08999 * 110.60089 * 270.82588 * 20 18 12 50 50 H 1.09000 * 109.95509 * 217.35947 * 21 20 18 51 51 H 1.08997 * 109.99114 * 96.13968 * 21 20 18 52 52 H 0.96997 * 120.00050 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5010 -0.8168 1.1956 6 7 4.1614 -1.6992 0.5360 7 6 5.4500 -1.5253 0.6835 8 6 5.6407 -0.4228 1.5195 9 6 4.3686 0.0194 1.8389 10 6 4.0206 1.1649 2.6947 11 8 2.9543 1.7314 2.5487 12 7 4.8835 1.5863 3.6404 13 6 6.2011 0.9477 3.8464 14 6 6.3963 0.5519 5.3084 15 6 6.0440 1.7097 6.2587 16 6 4.6179 2.1140 5.9665 17 1 3.9893 1.2240 5.9930 18 6 4.5827 2.7056 4.5238 19 1 5.3113 3.5072 4.4025 20 6 3.1371 3.2148 4.4872 21 6 2.9881 3.8156 5.9134 22 7 3.9961 3.1467 6.7727 23 6 4.2836 3.4467 8.0775 24 1 5.0999 2.9481 8.5790 25 6 3.5259 4.3917 8.7557 26 7 2.4669 4.9216 8.1811 27 14 4.0093 4.9115 10.4835 28 1 4.8377 6.1422 10.4168 29 1 2.7854 5.1811 11.2800 30 1 4.7894 3.8241 11.1274 31 1 -0.3633 0.4349 0.9311 32 1 -0.3633 0.5890 -0.8421 33 1 -0.3633 -1.0238 -0.0890 34 1 1.8934 -0.5137 -0.8901 35 1 1.7203 1.9409 0.9152 36 1 3.1288 1.4429 -0.0526 37 1 1.6344 1.9713 -0.8624 38 1 1.6117 -1.7228 1.2908 39 1 1.7447 -0.1627 2.1373 40 1 6.2280 -2.1270 0.2372 41 1 6.5808 -0.0042 1.8471 42 1 6.2682 0.0564 3.2224 43 1 6.9863 1.6460 3.5568 44 1 5.7572 -0.3016 5.5348 45 1 7.4372 0.2684 5.4646 46 1 6.1311 1.3794 7.2937 47 1 6.7121 2.5522 6.0800 48 1 2.4274 2.4026 4.3298 49 1 3.0210 3.9852 3.7250 50 1 1.9859 3.6221 6.2958 51 1 3.1752 4.8891 5.8870 52 1 1.9372 5.5816 8.6551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049502335.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:25 Heat of formation + Delta-G solvation = 91.957631 kcal Electronic energy + Delta-G solvation = -32742.273511 eV Core-core repulsion = 28745.132975 eV Total energy + Delta-G solvation = -3997.140536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.70681 -40.18241 -37.76328 -36.63470 -35.49732 -32.70214 -32.50702 -32.04056 -30.88976 -28.86456 -28.18716 -27.21864 -26.73274 -25.12640 -24.49230 -22.43745 -22.19190 -21.43423 -20.90186 -20.09133 -19.63363 -19.13868 -17.10138 -16.64286 -16.23209 -16.04519 -15.57703 -15.42147 -14.88488 -14.69455 -14.62890 -14.40717 -13.94026 -13.76069 -13.52067 -13.42358 -13.26540 -12.93906 -12.81780 -12.56524 -12.36192 -12.19508 -11.98234 -11.86749 -11.57836 -11.36052 -11.16988 -11.08711 -10.95334 -10.86447 -10.83174 -10.57743 -10.49157 -10.41082 -10.11768 -10.00859 -9.88640 -9.61378 -9.31695 -9.13094 -8.97459 -8.59785 -8.27193 -6.83535 -5.72207 -3.06109 1.30052 2.27777 2.52901 3.11459 3.23551 3.39412 3.44488 3.46742 4.33657 4.36495 4.48762 4.58075 4.77448 4.84159 4.85163 5.06488 5.08363 5.21475 5.25877 5.31384 5.34568 5.41556 5.42931 5.48359 5.57485 5.59623 5.64075 5.68150 5.77028 5.78490 5.80763 5.83875 5.94044 5.97313 6.06034 6.11299 6.21536 6.27556 6.35512 6.38613 6.44667 6.55377 6.66460 6.69450 6.74662 6.84941 7.12767 7.53839 7.55954 7.66761 7.81226 7.98388 8.22821 8.29178 9.17640 9.81936 10.49958 11.40508 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003271 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.919833 B = 8558.743127 C = 9872.508392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.149 4.149 4 C 0.121 3.879 5 N -0.252 5.252 6 N -0.283 5.283 7 C -0.005 4.005 8 C -0.212 4.212 9 C -0.019 4.019 10 C 0.586 3.414 11 O -0.524 6.524 12 N -0.580 5.580 13 C 0.077 3.923 14 C -0.128 4.128 15 C -0.117 4.117 16 C 0.160 3.840 17 H 0.018 0.982 18 C 0.118 3.882 19 H 0.084 0.916 20 C -0.127 4.127 21 C 0.172 3.828 22 N -0.592 5.592 23 C -0.228 4.228 24 H 0.079 0.921 25 C -0.006 4.006 26 N -0.918 5.918 27 Si 0.909 3.091 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.184 0.816 41 H 0.171 0.829 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.061 0.939 50 H 0.050 0.950 51 H 0.043 0.957 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -11.772 -16.252 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.206 4.206 4 C 0.001 3.999 5 N -0.039 5.039 6 N -0.115 5.115 7 C -0.181 4.181 8 C -0.241 4.241 9 C -0.148 4.148 10 C 0.372 3.628 11 O -0.402 6.402 12 N -0.312 5.312 13 C -0.044 4.044 14 C -0.167 4.167 15 C -0.155 4.155 16 C 0.050 3.950 17 H 0.035 0.965 18 C 0.014 3.986 19 H 0.102 0.898 20 C -0.165 4.165 21 C 0.047 3.953 22 N -0.317 5.317 23 C -0.356 4.356 24 H 0.096 0.904 25 C -0.203 4.203 26 N -0.565 5.565 27 Si 0.740 3.260 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.201 0.799 41 H 0.188 0.812 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.101 0.899 49 H 0.080 0.920 50 H 0.068 0.932 51 H 0.061 0.939 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.276 -11.997 -16.651 20.783 hybrid contribution 1.066 0.780 1.327 1.872 sum 4.342 -11.217 -15.324 19.481 Atomic orbital electron populations 1.21761 0.93648 1.01886 1.02871 1.21408 0.96571 0.97631 0.96636 1.21991 1.00637 0.94708 1.03262 1.22306 0.72823 1.02961 1.01766 1.45745 1.07519 1.18949 1.31718 1.73164 1.07099 1.14476 1.16810 1.23554 0.92590 0.99757 1.02201 1.22540 0.96735 1.00219 1.04572 1.21618 0.90660 0.98525 1.04036 1.16892 0.84109 0.82121 0.79629 1.90769 1.22981 1.57448 1.68967 1.47721 1.17540 1.32838 1.33119 1.22575 0.84070 0.99444 0.98358 1.21887 1.01603 0.99210 0.93980 1.21442 0.97760 0.97223 0.99116 1.20840 0.92675 0.92263 0.89195 0.96501 1.22627 0.98864 0.87453 0.89637 0.89812 1.22926 0.93843 1.00965 0.98777 1.21725 0.93501 0.95499 0.84560 1.44074 1.41728 1.36986 1.08882 1.18995 1.11891 1.18940 0.85797 0.90366 1.24801 0.97157 0.99944 0.98365 1.69953 1.17471 1.31931 1.37140 0.86143 0.77310 0.78517 0.84046 1.21667 1.21767 1.20650 0.91807 0.91897 0.92556 0.90876 0.89401 0.93537 0.93343 0.88811 0.86877 0.79932 0.81194 0.87451 0.91302 0.91900 0.90818 0.91460 0.91754 0.89907 0.92026 0.93162 0.93914 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.19 37.16 0.34 -0.90 16 2 C -0.10 -1.08 3.13 -90.62 -0.28 -1.37 16 3 C -0.15 -1.83 7.70 37.16 0.29 -1.54 16 4 C 0.12 1.39 5.40 -4.04 -0.02 1.36 16 5 N -0.25 -3.25 3.02 -57.14 -0.17 -3.42 16 6 N -0.28 -3.57 11.90 30.59 0.36 -3.20 16 7 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 8 C -0.21 -2.28 8.84 -38.98 -0.34 -2.63 16 9 C -0.02 -0.25 5.61 -82.06 -0.46 -0.71 16 10 C 0.59 8.94 7.46 -12.64 -0.09 8.84 16 11 O -0.52 -8.86 8.58 5.25 0.05 -8.81 16 12 N -0.58 -8.68 2.91 -165.11 -0.48 -9.16 16 13 C 0.08 0.89 5.54 -3.44 -0.02 0.87 16 14 C -0.13 -1.58 5.93 -26.42 -0.16 -1.73 16 15 C -0.12 -1.93 5.42 -27.24 -0.15 -2.08 16 16 C 0.16 3.22 2.59 -68.10 -0.18 3.05 16 17 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 18 C 0.12 2.13 3.36 -66.59 -0.22 1.91 16 19 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 20 C -0.13 -2.54 4.91 -25.25 -0.12 -2.66 16 21 C 0.17 4.21 5.44 -1.69 -0.01 4.20 16 22 N -0.59 -14.82 3.34 -162.98 -0.54 -15.36 16 23 C -0.23 -6.20 9.95 -15.06 -0.15 -6.35 16 24 H 0.08 2.04 7.30 -52.49 -0.38 1.66 16 25 C -0.01 -0.17 5.47 -17.43 -0.10 -0.26 16 26 N -0.92 -26.89 10.57 55.49 0.59 -26.30 16 27 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.24 5.98 -51.93 -0.31 0.93 16 36 H 0.05 0.64 7.04 -51.93 -0.37 0.28 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.11 1.43 6.54 -51.93 -0.34 1.09 16 40 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.17 1.40 5.79 -52.49 -0.30 1.09 16 42 H 0.11 1.04 3.39 -51.93 -0.18 0.87 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.18 7.74 -51.93 -0.40 0.77 16 47 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 48 H 0.08 1.72 6.27 -51.93 -0.33 1.39 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.05 1.37 7.44 -51.93 -0.39 0.98 16 51 H 0.04 1.14 7.65 -51.93 -0.40 0.74 16 52 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -31.39 386.41 -9.73 -41.12 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.44 Total: 2.73 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.89 Total: -0.27 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.25 Total: -57.44 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.05 Total: -8.81 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.39 -9.73 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049502335.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.074 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds