Wall clock time and date at job start Wed Apr 1 2020 04:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47244 * 2 1 4 4 C 1.53002 * 109.46901 * 120.00104 * 2 1 3 5 5 N 1.46501 * 109.47245 * 65.77510 * 4 2 1 6 6 N 1.28437 * 125.18846 * 272.96434 * 5 4 2 7 7 C 1.30860 * 110.92642 * 179.81904 * 6 5 4 8 8 C 1.39673 * 107.86224 * 0.43895 * 7 6 5 9 9 C 1.36598 * 125.19170 * 93.26912 * 5 4 2 10 10 C 1.47164 * 126.88398 * 0.02562 * 9 5 4 11 11 O 1.21635 * 119.99920 * 16.25064 * 10 9 5 12 12 N 1.34770 * 120.00107 * 196.24772 * 10 9 5 13 13 C 1.45733 * 117.76184 * 6.61902 * 12 10 9 14 14 C 1.53053 * 109.55703 * 141.07957 * 13 12 10 15 15 C 1.52939 * 108.49656 * 53.80478 * 14 13 12 16 16 C 1.52930 * 109.78794 * 294.00652 * 15 14 13 17 17 H 1.09000 * 110.50976 * 292.89573 * 16 15 14 18 18 C 1.44197 * 117.76281 * 186.35236 * 12 10 9 19 19 H 1.08998 * 109.22635 * 333.41043 * 18 12 10 20 20 C 1.54561 * 111.47738 * 93.66504 * 18 12 10 21 21 C 1.54057 * 103.67131 * 153.28770 * 20 18 12 22 22 N 1.46888 * 107.70594 * 342.84421 * 21 20 18 23 23 C 1.36938 * 125.58191 * 177.04841 * 22 21 20 24 24 H 1.07993 * 119.99992 * 179.97438 * 23 22 21 25 25 C 1.38811 * 119.99854 * 359.97438 * 23 22 21 26 26 N 1.31621 * 120.00142 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99998 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47012 * 89.99841 * 27 25 23 29 29 H 1.48494 * 109.47426 * 209.99955 * 27 25 23 30 30 H 1.48500 * 109.46949 * 330.00227 * 27 25 23 31 31 H 1.09001 * 109.47346 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47045 * 299.99963 * 1 2 3 33 33 H 1.08996 * 109.47295 * 59.99622 * 1 2 3 34 34 H 1.08995 * 109.46888 * 239.99710 * 2 1 3 35 35 H 1.08996 * 109.46725 * 184.93472 * 3 2 1 36 36 H 1.09000 * 109.46685 * 304.93130 * 3 2 1 37 37 H 1.08996 * 109.46538 * 64.93176 * 3 2 1 38 38 H 1.09002 * 109.46587 * 185.77018 * 4 2 1 39 39 H 1.09001 * 109.46903 * 305.77050 * 4 2 1 40 40 H 1.08008 * 126.07222 * 180.18584 * 7 6 5 41 41 H 1.08001 * 127.31817 * 179.78162 * 8 7 6 42 42 H 1.09003 * 109.45587 * 261.10835 * 13 12 10 43 43 H 1.09000 * 109.45483 * 21.06975 * 13 12 10 44 44 H 1.09001 * 109.62971 * 173.50197 * 14 13 12 45 45 H 1.09002 * 109.63493 * 293.89613 * 14 13 12 46 46 H 1.08992 * 109.41947 * 54.10420 * 15 14 13 47 47 H 1.08997 * 109.41741 * 173.97431 * 15 14 13 48 48 H 1.09007 * 110.62664 * 34.73864 * 20 18 12 49 49 H 1.09001 * 110.59138 * 271.81623 * 20 18 12 50 50 H 1.08999 * 109.81318 * 223.29488 * 21 20 18 51 51 H 1.08999 * 109.86812 * 102.42939 * 21 20 18 52 52 H 0.96998 * 119.99920 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6684 -2.1368 1.1818 6 7 0.5554 -2.6301 1.5908 7 6 0.5163 -3.9231 1.3928 8 6 1.7259 -4.3035 0.8070 9 6 2.4552 -3.1341 0.6797 10 6 3.8076 -2.9936 0.1167 11 8 4.4515 -1.9831 0.3260 12 7 4.3327 -3.9844 -0.6308 13 6 3.4687 -5.1067 -0.9740 14 6 3.7492 -5.5480 -2.4125 15 6 5.2474 -5.8214 -2.5527 16 6 6.0295 -4.5181 -2.3841 17 1 5.8260 -3.8406 -3.2133 18 6 5.7093 -3.8588 -1.0412 19 1 5.9752 -2.8028 -1.0875 20 6 6.6617 -4.5691 -0.0526 21 6 7.8794 -4.9379 -0.9212 22 7 7.4666 -4.8527 -2.3283 23 6 8.2811 -5.0514 -3.4111 24 1 7.8810 -4.9663 -4.4106 25 6 9.6209 -5.3622 -3.2239 26 7 10.1084 -5.4664 -2.0058 27 14 10.7322 -5.6326 -4.7009 28 1 11.3443 -4.3407 -5.1028 29 1 11.8027 -6.5981 -4.3448 30 1 9.9328 -6.1738 -5.8293 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 3.1264 1.4437 -0.0884 36 1 1.6064 1.9812 -0.8425 37 1 1.7506 1.9301 0.9309 38 1 3.1251 -0.6326 1.3024 39 1 1.5947 -0.2706 2.1362 40 1 -0.3038 -4.5802 1.6422 41 1 2.0276 -5.2985 0.5150 42 1 3.6644 -5.9365 -0.2949 43 1 2.4258 -4.8026 -0.8846 44 1 3.1889 -6.4568 -2.6325 45 1 3.4518 -4.7583 -3.1024 46 1 5.5591 -6.5326 -1.7879 47 1 5.4488 -6.2387 -3.5393 48 1 6.1945 -5.4667 0.3529 49 1 6.9548 -3.8927 0.7503 50 1 8.2028 -5.9533 -0.6920 51 1 8.6944 -4.2393 -0.7323 52 1 11.0446 -5.6839 -1.8750 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049502337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:30 Heat of formation + Delta-G solvation = 84.129187 kcal Electronic energy + Delta-G solvation = -32305.844540 eV Core-core repulsion = 28308.364537 eV Total energy + Delta-G solvation = -3997.480003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.76699 -40.30266 -37.90349 -36.77554 -35.54220 -32.71791 -32.57405 -32.07940 -30.97615 -28.99175 -28.27950 -27.41135 -26.78134 -25.12765 -24.47525 -22.65258 -22.38180 -21.54266 -21.01440 -20.14791 -19.59571 -18.46682 -17.22249 -16.97433 -16.73883 -16.13316 -15.67150 -15.20267 -14.92354 -14.73942 -14.55667 -14.31892 -14.09067 -13.87401 -13.71924 -13.38765 -13.28794 -13.08231 -12.82457 -12.51022 -12.49449 -12.21514 -12.09123 -11.98554 -11.59564 -11.44162 -11.25986 -11.12699 -11.04451 -10.97548 -10.83451 -10.72112 -10.66395 -10.42828 -10.14776 -10.09907 -9.75779 -9.65368 -9.62275 -9.27336 -9.00031 -8.61985 -8.38687 -6.88823 -5.73226 -3.08122 1.21625 2.24912 2.50786 3.12227 3.16705 3.38961 3.44010 3.45782 4.29755 4.35930 4.44909 4.46406 4.67978 4.78436 4.92675 5.02307 5.09525 5.11569 5.25924 5.28214 5.34515 5.36963 5.39189 5.46243 5.47284 5.54194 5.57047 5.58893 5.61092 5.68607 5.70864 5.81392 5.85332 5.97671 5.98086 6.03977 6.06704 6.19033 6.27975 6.33539 6.36423 6.52223 6.55310 6.63788 6.71864 6.92113 7.04178 7.40286 7.54848 7.61293 7.81257 7.95073 8.16236 8.23796 9.18823 9.78552 10.43119 11.37583 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002855 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.413564 B = 9804.989605 C =10411.519712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.144 4.144 4 C 0.114 3.886 5 N -0.252 5.252 6 N -0.278 5.278 7 C -0.009 4.009 8 C -0.204 4.204 9 C -0.029 4.029 10 C 0.579 3.421 11 O -0.541 6.541 12 N -0.566 5.566 13 C 0.085 3.915 14 C -0.132 4.132 15 C -0.132 4.132 16 C 0.163 3.837 17 H 0.055 0.945 18 C 0.136 3.864 19 H 0.096 0.904 20 C -0.151 4.151 21 C 0.179 3.821 22 N -0.595 5.595 23 C -0.228 4.228 24 H 0.078 0.922 25 C -0.006 4.006 26 N -0.920 5.920 27 Si 0.912 3.088 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.184 0.816 41 H 0.173 0.827 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.041 0.959 51 H 0.053 0.947 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.658 5.131 5.849 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.201 4.201 4 C -0.006 4.006 5 N -0.039 5.039 6 N -0.110 5.110 7 C -0.185 4.185 8 C -0.232 4.232 9 C -0.157 4.157 10 C 0.365 3.635 11 O -0.419 6.419 12 N -0.296 5.296 13 C -0.037 4.037 14 C -0.171 4.171 15 C -0.172 4.172 16 C 0.054 3.946 17 H 0.073 0.927 18 C 0.032 3.968 19 H 0.114 0.886 20 C -0.190 4.190 21 C 0.054 3.946 22 N -0.319 5.319 23 C -0.356 4.356 24 H 0.096 0.904 25 C -0.202 4.202 26 N -0.567 5.567 27 Si 0.743 3.257 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.141 0.859 39 H 0.115 0.885 40 H 0.201 0.799 41 H 0.191 0.809 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.059 0.941 51 H 0.071 0.929 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.585 6.626 6.327 22.532 hybrid contribution 1.090 -1.090 -0.983 1.828 sum -19.496 5.536 5.343 20.959 Atomic orbital electron populations 1.21872 0.94280 1.02547 1.01754 1.21434 0.96828 0.96981 0.97458 1.21750 1.01856 0.94281 1.02252 1.22460 1.03828 0.74295 1.00048 1.45749 1.09419 1.08072 1.40694 1.73172 1.05808 1.12729 1.19276 1.23598 0.99599 0.91362 1.03917 1.22791 0.95126 0.98805 1.06484 1.21473 0.95791 0.89796 1.08682 1.17099 0.83807 0.83458 0.79098 1.90750 1.62075 1.28888 1.60191 1.46751 1.12163 1.20582 1.50144 1.22408 0.95106 0.88963 0.97266 1.21870 0.98638 1.01306 0.95303 1.22137 0.92351 1.00236 1.02467 1.20822 0.86655 0.93684 0.93438 0.92725 1.21233 0.77975 1.01832 0.95796 0.88635 1.23108 0.98147 0.99335 0.98422 1.21061 0.91408 1.00341 0.81758 1.44505 1.02770 1.82117 1.02556 1.19008 0.89909 1.41092 0.85596 0.90391 1.24803 0.96908 1.01827 0.96703 1.69969 1.13623 1.54489 1.18616 0.86119 0.80489 0.77572 0.81563 1.21584 1.21698 1.20697 0.92070 0.92420 0.92592 0.90605 0.91758 0.91883 0.92311 0.85920 0.88527 0.79852 0.80945 0.91436 0.87970 0.90921 0.91724 0.91885 0.91786 0.92452 0.91937 0.94097 0.92905 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.99 37.16 0.33 -1.00 16 2 C -0.11 -1.06 3.12 -90.61 -0.28 -1.35 16 3 C -0.14 -1.18 9.19 37.16 0.34 -0.84 16 4 C 0.11 1.25 5.44 -4.04 -0.02 1.23 16 5 N -0.25 -3.16 3.10 -57.14 -0.18 -3.33 16 6 N -0.28 -3.32 10.63 30.59 0.33 -3.00 16 7 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 8 C -0.20 -2.17 8.57 -38.99 -0.33 -2.51 16 9 C -0.03 -0.38 6.56 -82.06 -0.54 -0.92 16 10 C 0.58 9.00 7.52 -12.64 -0.10 8.91 16 11 O -0.54 -9.73 13.95 5.25 0.07 -9.66 16 12 N -0.57 -8.56 2.79 -168.77 -0.47 -9.03 16 13 C 0.08 1.00 4.62 -4.43 -0.02 0.98 16 14 C -0.13 -1.65 6.10 -26.74 -0.16 -1.82 16 15 C -0.13 -2.22 5.31 -26.80 -0.14 -2.36 16 16 C 0.16 3.22 3.27 -67.34 -0.22 3.00 16 17 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 18 C 0.14 2.49 2.81 -68.34 -0.19 2.30 16 19 H 0.10 1.95 7.00 -51.93 -0.36 1.58 16 20 C -0.15 -2.92 6.46 -25.36 -0.16 -3.09 16 21 C 0.18 4.31 5.39 -3.28 -0.02 4.29 16 22 N -0.60 -14.62 2.94 -163.89 -0.48 -15.10 16 23 C -0.23 -6.15 10.27 -15.06 -0.15 -6.31 16 24 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 25 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 26 N -0.92 -26.63 10.29 55.49 0.57 -26.06 16 27 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 31 H 0.06 0.64 6.80 -51.93 -0.35 0.29 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 1.53 5.96 -51.93 -0.31 1.22 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.17 1.46 5.26 -52.49 -0.28 1.19 16 42 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 43 H 0.10 1.03 4.32 -51.93 -0.22 0.81 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 50 H 0.04 1.08 7.60 -51.93 -0.39 0.68 16 51 H 0.05 1.43 7.24 -51.93 -0.38 1.05 16 52 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -31.15 395.65 -9.78 -40.93 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.58 Total: 2.56 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.98 Total: -0.04 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.23 Total: -56.53 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.15 -9.78 -40.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049502337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.055 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds