Wall clock time and date at job start Wed Apr 1 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47095 * 2 1 4 4 C 1.53008 * 109.46998 * 120.00021 * 2 1 3 5 5 N 1.46502 * 109.46662 * 65.63500 * 4 2 1 6 6 N 1.28450 * 125.18826 * 274.11185 * 5 4 2 7 7 C 1.30868 * 110.92421 * 179.88388 * 6 5 4 8 8 C 1.39669 * 107.86280 * 0.38454 * 7 6 5 9 9 C 1.36596 * 125.19249 * 94.42672 * 5 4 2 10 10 C 1.47158 * 126.88336 * 359.97427 * 9 5 4 11 11 O 1.21629 * 120.00221 * 334.54956 * 10 9 5 12 12 N 1.34781 * 120.00137 * 154.54234 * 10 9 5 13 13 C 1.46798 * 119.57488 * 359.74224 * 12 10 9 14 14 C 1.53468 * 107.59038 * 232.05448 * 13 12 10 15 15 C 1.52728 * 108.44001 * 301.91484 * 14 13 12 16 16 C 1.53012 * 110.80513 * 63.77047 * 15 14 13 17 17 H 1.09001 * 111.38828 * 69.73283 * 16 15 14 18 18 C 1.45121 * 119.57916 * 179.46690 * 12 10 9 19 19 H 1.09002 * 109.97008 * 11.93592 * 18 12 10 20 20 C 1.53902 * 111.89883 * 248.66685 * 18 12 10 21 21 C 1.54568 * 102.55236 * 203.54262 * 20 18 12 22 22 N 1.47120 * 107.25530 * 21.70919 * 21 20 18 23 23 C 1.36938 * 125.77073 * 182.60239 * 22 21 20 24 24 H 1.08002 * 120.00084 * 180.02562 * 23 22 21 25 25 C 1.38814 * 119.99802 * 359.97438 * 23 22 21 26 26 N 1.31616 * 120.00075 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99965 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47004 * 60.00024 * 27 25 23 29 29 H 1.48502 * 109.47216 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47164 * 300.00299 * 27 25 23 31 31 H 1.09006 * 109.47223 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47467 * 299.99935 * 1 2 3 33 33 H 1.09003 * 109.47261 * 60.00244 * 1 2 3 34 34 H 1.09002 * 109.47055 * 239.99761 * 2 1 3 35 35 H 1.09002 * 109.47169 * 184.95442 * 3 2 1 36 36 H 1.08996 * 109.47202 * 304.95911 * 3 2 1 37 37 H 1.09006 * 109.47053 * 64.96052 * 3 2 1 38 38 H 1.09002 * 109.46848 * 185.62932 * 4 2 1 39 39 H 1.08990 * 109.47054 * 305.63578 * 4 2 1 40 40 H 1.07998 * 126.06670 * 180.13440 * 7 6 5 41 41 H 1.08000 * 127.32243 * 179.75994 * 8 7 6 42 42 H 1.08996 * 109.83672 * 351.57885 * 13 12 10 43 43 H 1.09002 * 109.83518 * 112.46967 * 13 12 10 44 44 H 1.09007 * 109.63703 * 61.60320 * 14 13 12 45 45 H 1.09001 * 109.63669 * 182.22779 * 14 13 12 46 46 H 1.09010 * 109.21014 * 184.10626 * 15 14 13 47 47 H 1.08995 * 109.21367 * 303.42252 * 15 14 13 48 48 H 1.08998 * 110.73169 * 85.28526 * 20 18 12 49 49 H 1.08998 * 110.80284 * 321.83007 * 20 18 12 50 50 H 1.08999 * 109.88575 * 262.29988 * 21 20 18 51 51 H 1.08994 * 110.02026 * 141.19487 * 21 20 18 52 52 H 0.96999 * 120.00289 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6655 -2.1361 1.1833 6 7 0.5436 -2.6239 1.5749 7 6 0.5049 -3.9181 1.3850 8 6 1.7236 -4.3053 0.8233 9 6 2.4583 -3.1387 0.7016 10 6 3.8208 -3.0052 0.1618 11 8 4.1840 -1.9483 -0.3181 12 7 4.6663 -4.0542 0.1993 13 6 4.2202 -5.3237 0.7859 14 6 5.2639 -5.7446 1.8294 15 6 6.6190 -5.8659 1.1356 16 6 7.0767 -4.5092 0.5959 17 1 7.3406 -3.8281 1.4049 18 6 6.0040 -3.9159 -0.3461 19 1 6.2192 -2.8655 -0.5426 20 6 6.1927 -4.7540 -1.6230 21 6 7.7241 -4.9589 -1.6671 22 7 8.2302 -4.7628 -0.2997 23 6 9.5447 -4.8070 0.0814 24 1 9.8127 -4.6494 1.1157 25 6 10.5327 -5.0553 -0.8616 26 7 10.2060 -5.2478 -2.1220 27 14 12.3258 -5.1162 -0.3417 28 1 12.5129 -6.1913 0.6655 29 1 13.1756 -5.3958 -1.5270 30 1 12.7144 -3.8107 0.2498 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.1264 1.4437 -0.0888 36 1 1.6059 1.9813 -0.8422 37 1 1.7510 1.9300 0.9311 38 1 3.1253 -0.6348 1.3011 39 1 1.5966 -0.2691 2.1363 40 1 -0.3212 -4.5714 1.6242 41 1 2.0281 -5.3030 0.5436 42 1 3.2509 -5.1891 1.2658 43 1 4.1455 -6.0843 0.0087 44 1 5.3206 -4.9913 2.6153 45 1 4.9848 -6.7066 2.2593 46 1 7.3557 -6.2349 1.8494 47 1 6.5369 -6.5716 0.3091 48 1 5.8502 -4.2041 -2.4996 49 1 5.6764 -5.7102 -1.5383 50 1 8.1767 -4.2288 -2.3381 51 1 7.9559 -5.9682 -2.0070 52 1 10.8964 -5.4209 -2.7810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049502339.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:35 Heat of formation + Delta-G solvation = 86.184217 kcal Electronic energy + Delta-G solvation = -32249.918387 eV Core-core repulsion = 28252.527497 eV Total energy + Delta-G solvation = -3997.390890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.76271 -40.19979 -37.93156 -36.74214 -35.39261 -32.60792 -32.43294 -32.10115 -30.97340 -29.01369 -28.13757 -27.37527 -26.78650 -25.19283 -24.36564 -22.63899 -22.34841 -21.59634 -20.99561 -20.08830 -19.52318 -18.45968 -17.31634 -16.94652 -16.72617 -16.16811 -15.65675 -15.07074 -14.89085 -14.75991 -14.56811 -14.34253 -14.11351 -13.77908 -13.66808 -13.36483 -13.24873 -13.00893 -12.76694 -12.54660 -12.46555 -12.20262 -12.07431 -11.94671 -11.57537 -11.38621 -11.21400 -11.09157 -11.00766 -10.95966 -10.81970 -10.76585 -10.63450 -10.39387 -10.16974 -10.12576 -9.77771 -9.64613 -9.63116 -9.28118 -9.00327 -8.63721 -8.34321 -6.88348 -5.72806 -3.07093 1.24420 2.23264 2.48990 3.08138 3.17358 3.39724 3.44226 3.45250 4.30553 4.34539 4.47207 4.48234 4.71763 4.81785 4.96617 5.02605 5.09538 5.15305 5.26799 5.30503 5.34643 5.37152 5.40384 5.45190 5.50565 5.55107 5.57719 5.61035 5.62104 5.71365 5.73447 5.82787 5.86743 5.99269 6.03439 6.09517 6.10101 6.17017 6.29483 6.32185 6.34796 6.48004 6.55821 6.62861 6.70533 6.91379 7.02955 7.46471 7.53317 7.59095 7.80270 7.93907 8.16871 8.22866 9.18598 9.78241 10.43933 11.38326 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.002869 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.520751 B = 9756.867165 C =10649.581424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.125 3.875 5 N -0.254 5.254 6 N -0.279 5.279 7 C -0.006 4.006 8 C -0.206 4.206 9 C -0.023 4.023 10 C 0.580 3.420 11 O -0.539 6.539 12 N -0.571 5.571 13 C 0.071 3.929 14 C -0.132 4.132 15 C -0.131 4.131 16 C 0.157 3.843 17 H 0.060 0.940 18 C 0.132 3.868 19 H 0.103 0.897 20 C -0.151 4.151 21 C 0.181 3.819 22 N -0.598 5.598 23 C -0.228 4.228 24 H 0.077 0.923 25 C -0.006 4.006 26 N -0.921 5.921 27 Si 0.912 3.088 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.185 0.815 41 H 0.173 0.827 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.052 0.948 51 H 0.042 0.958 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.621 3.942 6.585 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.200 4.200 4 C 0.005 3.995 5 N -0.041 5.041 6 N -0.110 5.110 7 C -0.182 4.182 8 C -0.235 4.235 9 C -0.152 4.152 10 C 0.366 3.634 11 O -0.417 6.417 12 N -0.302 5.302 13 C -0.051 4.051 14 C -0.171 4.171 15 C -0.171 4.171 16 C 0.048 3.952 17 H 0.078 0.922 18 C 0.028 3.972 19 H 0.121 0.879 20 C -0.190 4.190 21 C 0.056 3.944 22 N -0.322 5.322 23 C -0.356 4.356 24 H 0.095 0.905 25 C -0.203 4.203 26 N -0.568 5.568 27 Si 0.742 3.258 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.202 0.798 41 H 0.190 0.810 42 H 0.131 0.869 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.061 0.939 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.726 5.517 6.607 22.442 hybrid contribution 1.469 -1.002 -0.118 1.782 sum -19.257 4.515 6.489 20.816 Atomic orbital electron populations 1.21876 0.94423 1.02507 1.01659 1.21417 0.96559 0.96875 0.97747 1.21738 1.01878 0.94344 1.02084 1.22249 1.02542 0.74468 1.00273 1.45758 1.08834 1.07947 1.41524 1.73183 1.05345 1.12779 1.19741 1.23588 0.99167 0.91239 1.04201 1.22558 0.95083 0.98294 1.07550 1.21516 0.95526 0.89511 1.08645 1.17043 0.82781 0.84204 0.79332 1.90803 1.76983 1.27416 1.46531 1.47325 1.13273 1.11484 1.58097 1.22841 1.00140 0.85348 0.96773 1.21918 0.96290 1.01141 0.97709 1.22137 0.94660 1.00192 1.00112 1.21432 0.87430 0.93811 0.92512 0.92227 1.21823 0.79279 1.01770 0.94313 0.87907 1.23025 1.00722 0.98876 0.96388 1.21177 0.85534 1.00686 0.87014 1.44706 1.00920 1.83517 1.03094 1.18980 0.80678 1.42170 0.93773 0.90501 1.24791 0.98004 1.01929 0.95534 1.69938 1.31599 1.54683 1.00605 0.86205 0.84606 0.77852 0.77109 1.21209 1.21615 1.21163 0.92086 0.92528 0.92626 0.89848 0.91772 0.91920 0.92505 0.87373 0.88570 0.79829 0.80985 0.86930 0.90954 0.91944 0.91191 0.92144 0.91801 0.91957 0.92137 0.93024 0.93947 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.97 37.16 0.33 -1.05 16 2 C -0.11 -1.10 3.12 -90.62 -0.28 -1.38 16 3 C -0.14 -1.22 9.19 37.15 0.34 -0.88 16 4 C 0.12 1.36 5.17 -4.04 -0.02 1.34 16 5 N -0.25 -3.14 3.12 -57.14 -0.18 -3.32 16 6 N -0.28 -3.30 10.55 30.59 0.32 -2.97 16 7 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 8 C -0.21 -2.17 8.65 -38.98 -0.34 -2.51 16 9 C -0.02 -0.30 6.57 -82.06 -0.54 -0.84 16 10 C 0.58 9.00 7.44 -12.64 -0.09 8.91 16 11 O -0.54 -9.73 14.67 5.25 0.08 -9.65 16 12 N -0.57 -8.61 2.74 -166.45 -0.46 -9.06 16 13 C 0.07 0.84 5.07 -3.64 -0.02 0.82 16 14 C -0.13 -1.68 6.11 -26.63 -0.16 -1.84 16 15 C -0.13 -2.22 5.10 -26.86 -0.14 -2.36 16 16 C 0.16 3.11 3.62 -66.14 -0.24 2.87 16 17 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 18 C 0.13 2.41 3.09 -67.36 -0.21 2.21 16 19 H 0.10 2.11 6.95 -51.93 -0.36 1.75 16 20 C -0.15 -2.84 6.06 -25.44 -0.15 -2.99 16 21 C 0.18 4.29 5.19 -2.88 -0.01 4.28 16 22 N -0.60 -14.67 2.91 -161.95 -0.47 -15.14 16 23 C -0.23 -6.18 10.29 -15.06 -0.15 -6.33 16 24 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 25 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 26 N -0.92 -26.65 10.33 55.49 0.57 -26.07 16 27 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 31 H 0.06 0.67 6.75 -51.93 -0.35 0.32 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 1.30 6.78 -51.93 -0.35 0.94 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.17 1.42 5.84 -52.49 -0.31 1.11 16 42 H 0.11 1.12 3.33 -51.94 -0.17 0.95 16 43 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 44 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 47 H 0.06 1.16 7.12 -51.93 -0.37 0.79 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.06 1.04 6.81 -51.93 -0.35 0.69 16 50 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 51 H 0.04 1.10 7.59 -51.93 -0.39 0.71 16 52 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 394.25 15.07 5.94 5.94 Total: -1.00 -31.19 394.25 -9.68 -40.87 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.47 Total: 2.85 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.99 Total: -0.30 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.21 Total: -56.58 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.19 -9.68 -40.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049502339.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.057 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds