Wall clock time and date at job start Wed Apr 1 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 C 1.53006 * 109.46804 * 119.99983 * 2 1 3 5 5 N 1.46495 * 109.47023 * 176.01824 * 4 2 1 6 6 N 1.28443 * 125.18816 * 275.70108 * 5 4 2 7 7 C 1.30869 * 110.92025 * 179.88346 * 6 5 4 8 8 C 1.39670 * 107.86430 * 0.37664 * 7 6 5 9 9 C 1.36600 * 125.18984 * 96.01086 * 5 4 2 10 10 C 1.47163 * 126.88155 * 359.97438 * 9 5 4 11 11 O 1.21623 * 120.00294 * 27.70332 * 10 9 5 12 12 N 1.34783 * 119.99958 * 207.69425 * 10 9 5 13 13 C 1.47853 * 122.22843 * 8.31583 * 12 10 9 14 14 C 1.53140 * 110.81912 * 127.48138 * 13 12 10 15 15 C 1.53865 * 111.46765 * 48.78173 * 14 13 12 16 16 C 1.51087 * 107.34470 * 302.92730 * 15 14 13 17 17 H 1.08994 * 108.73772 * 308.52599 * 16 15 14 18 18 C 1.45724 * 122.22896 * 188.60105 * 12 10 9 19 19 H 1.08998 * 111.06298 * 119.46697 * 18 12 10 20 20 C 1.53423 * 116.38039 * 350.09862 * 18 12 10 21 21 C 1.55468 * 101.67128 * 207.26142 * 20 18 12 22 22 N 1.45028 * 119.18802 * 183.87175 * 16 15 14 23 23 C 1.36940 * 126.55360 * 28.81591 * 22 16 15 24 24 H 1.07993 * 120.00910 * 0.02562 * 23 22 16 25 25 C 1.38821 * 119.99534 * 179.97438 * 23 22 16 26 26 N 1.31628 * 119.99826 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 119.99910 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47147 * 90.00668 * 27 25 23 29 29 H 1.48507 * 109.47134 * 210.00099 * 27 25 23 30 30 H 1.48495 * 109.47553 * 330.00167 * 27 25 23 31 31 H 1.08995 * 109.47244 * 300.00214 * 1 2 3 32 32 H 1.09004 * 109.46752 * 60.00423 * 1 2 3 33 33 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46844 * 239.99235 * 2 1 3 35 35 H 1.09001 * 109.47265 * 64.76793 * 3 2 1 36 36 H 1.08998 * 109.46892 * 184.77149 * 3 2 1 37 37 H 1.08999 * 109.47317 * 304.77167 * 3 2 1 38 38 H 1.09002 * 109.46466 * 296.02170 * 4 2 1 39 39 H 1.09000 * 109.47212 * 56.01381 * 4 2 1 40 40 H 1.08003 * 126.06017 * 180.14067 * 7 6 5 41 41 H 1.08004 * 127.31617 * 179.80074 * 8 7 6 42 42 H 1.08998 * 109.15868 * 247.94411 * 13 12 10 43 43 H 1.09002 * 109.15605 * 7.13083 * 13 12 10 44 44 H 1.08993 * 109.21830 * 288.19380 * 14 13 12 45 45 H 1.09003 * 108.92794 * 169.17616 * 14 13 12 46 46 H 1.09001 * 109.88614 * 183.46709 * 15 14 13 47 47 H 1.09008 * 109.88350 * 62.38555 * 15 14 13 48 48 H 1.09001 * 110.99013 * 325.35914 * 20 18 12 49 49 H 1.08996 * 110.99116 * 89.16573 * 20 18 12 50 50 H 1.09006 * 109.96090 * 263.22368 * 21 20 18 51 51 H 1.09000 * 109.99399 * 141.99587 * 21 20 18 52 52 H 0.96999 * 119.99614 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5018 -0.8049 1.2024 6 7 4.1719 -1.7116 0.5871 7 6 5.4586 -1.5171 0.7262 8 6 5.6369 -0.3781 1.5146 9 6 4.3601 0.0660 1.8112 10 6 3.9993 1.2410 2.6206 11 8 2.9430 1.2634 3.2230 12 7 4.8396 2.2922 2.6944 13 6 6.0465 2.3980 1.8469 14 6 6.0789 3.7406 1.1111 15 6 5.8139 4.9147 2.0697 16 6 4.4781 4.6645 2.7297 17 1 3.7377 4.4618 1.9559 18 6 4.6224 3.3973 3.6192 19 1 5.4544 3.4938 4.3166 20 6 3.2690 3.4260 4.3412 21 6 3.0899 4.9462 4.6134 22 7 3.9346 5.6652 3.6279 23 6 4.1580 7.0152 3.5759 24 1 4.7951 7.4281 2.8079 25 6 3.5644 7.8533 4.5099 26 7 2.7874 7.3502 5.4457 27 14 3.8685 9.6950 4.4387 28 1 2.8393 10.3338 3.5796 29 1 3.7914 10.2628 5.8088 30 1 5.2164 9.9526 3.8713 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5140 -0.8899 35 1 1.7482 1.9311 0.9296 36 1 3.1267 1.4436 -0.0855 37 1 1.6087 1.9804 -0.8441 38 1 1.7360 -0.1678 2.1378 39 1 1.6195 -1.7262 1.2857 40 1 6.2432 -2.1308 0.3087 41 1 6.5724 0.0626 1.8263 42 1 6.9332 2.3091 2.4745 43 1 6.0431 1.5884 1.1171 44 1 5.3187 3.7401 0.3300 45 1 7.0597 3.8693 0.6531 46 1 5.7818 5.8498 1.5106 47 1 6.5981 4.9604 2.8255 48 1 2.4748 3.0485 3.6971 49 1 3.3124 2.8648 5.2745 50 1 3.4157 5.1838 5.6261 51 1 2.0450 5.2276 4.4832 52 1 2.3730 7.9358 6.0986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049502341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:40 Heat of formation + Delta-G solvation = 82.314964 kcal Electronic energy + Delta-G solvation = -32981.699442 eV Core-core repulsion = 28984.140768 eV Total energy + Delta-G solvation = -3997.558673 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.69439 -40.18763 -37.74812 -36.67475 -35.50258 -32.73140 -32.46621 -32.02015 -30.86301 -28.85039 -28.18437 -27.35196 -26.74042 -25.08227 -24.48475 -22.45665 -22.09755 -21.43630 -20.95449 -20.15699 -19.63537 -19.08643 -17.11789 -16.68993 -16.28062 -15.91832 -15.50590 -15.30129 -14.98791 -14.69740 -14.60668 -14.38138 -13.93073 -13.84847 -13.60569 -13.44112 -13.26812 -13.01569 -12.86187 -12.51613 -12.42353 -12.24102 -12.09709 -11.84824 -11.59968 -11.45532 -11.23737 -11.16780 -11.00618 -10.88331 -10.83337 -10.62871 -10.56751 -10.47343 -10.11418 -10.02407 -9.88141 -9.62356 -9.24035 -9.17337 -8.95886 -8.58648 -8.30857 -6.83561 -5.70775 -3.04974 1.30283 2.26064 2.53798 3.10571 3.19824 3.39778 3.44652 3.46646 4.31294 4.37766 4.49025 4.52142 4.73465 4.78734 4.84904 5.07085 5.09013 5.19874 5.26064 5.28900 5.33425 5.42130 5.43473 5.47290 5.52771 5.59248 5.62650 5.64901 5.70122 5.71578 5.76801 5.82935 5.87304 5.97378 6.03020 6.06803 6.20268 6.21719 6.27680 6.38489 6.39329 6.52780 6.66080 6.70097 6.73780 6.87263 7.15384 7.53433 7.59064 7.65518 7.83106 7.98253 8.23581 8.25663 9.18752 9.82612 10.50519 11.41209 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.003344 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.646537 B = 8369.980902 C = 9107.635948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.152 4.152 4 C 0.112 3.888 5 N -0.252 5.252 6 N -0.283 5.283 7 C -0.006 4.006 8 C -0.203 4.203 9 C -0.023 4.023 10 C 0.593 3.407 11 O -0.529 6.529 12 N -0.582 5.582 13 C 0.095 3.905 14 C -0.128 4.128 15 C -0.117 4.117 16 C 0.161 3.839 17 H 0.018 0.982 18 C 0.117 3.883 19 H 0.083 0.917 20 C -0.136 4.136 21 C 0.173 3.827 22 N -0.592 5.592 23 C -0.227 4.227 24 H 0.079 0.921 25 C -0.006 4.006 26 N -0.919 5.919 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.184 0.816 41 H 0.163 0.837 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.059 0.941 50 H 0.056 0.944 51 H 0.039 0.961 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 -17.001 -10.682 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 C -0.209 4.209 4 C -0.008 4.008 5 N -0.039 5.039 6 N -0.115 5.115 7 C -0.182 4.182 8 C -0.231 4.231 9 C -0.152 4.152 10 C 0.379 3.621 11 O -0.407 6.407 12 N -0.314 5.314 13 C -0.027 4.027 14 C -0.167 4.167 15 C -0.155 4.155 16 C 0.051 3.949 17 H 0.035 0.965 18 C 0.014 3.986 19 H 0.101 0.899 20 C -0.174 4.174 21 C 0.049 3.951 22 N -0.317 5.317 23 C -0.355 4.355 24 H 0.096 0.904 25 C -0.203 4.203 26 N -0.567 5.567 27 Si 0.740 3.260 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.141 0.859 39 H 0.115 0.885 40 H 0.201 0.799 41 H 0.180 0.820 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.108 0.892 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.655 -17.483 -10.705 20.671 hybrid contribution 0.964 1.496 0.339 1.812 sum 3.619 -15.986 -10.366 19.394 Atomic orbital electron populations 1.21766 0.93413 1.02093 1.02948 1.21452 0.96851 0.97127 0.97131 1.21905 1.00819 0.95082 1.03087 1.22467 0.72853 1.03565 1.01905 1.45740 1.07485 1.16814 1.33908 1.73167 1.06750 1.14052 1.17570 1.23534 0.92689 0.99085 1.02898 1.22365 0.96448 0.99732 1.04588 1.21630 0.90790 0.97665 1.05131 1.16888 0.83675 0.80928 0.80612 1.90757 1.22858 1.80331 1.46708 1.47679 1.25291 1.19839 1.38574 1.22281 0.86912 0.99201 0.94347 1.21968 1.02000 0.94125 0.98577 1.21449 0.98484 0.97287 0.98311 1.20750 0.93281 0.88619 0.92216 0.96469 1.22510 0.99421 0.84973 0.91744 0.89891 1.23084 0.95566 0.98982 0.99796 1.21729 0.95020 0.84641 0.93745 1.44087 1.53826 1.01735 1.32062 1.18984 1.24968 0.80466 1.11059 0.90368 1.24799 0.99686 0.98022 0.97789 1.69949 1.35147 1.33328 1.18237 0.86159 0.77723 0.85267 0.76832 1.21662 1.21699 1.20710 0.91770 0.91792 0.92355 0.90512 0.91409 0.93175 0.92125 0.85906 0.88535 0.79929 0.81999 0.91251 0.88791 0.91898 0.90810 0.91444 0.91708 0.89177 0.92242 0.92603 0.94247 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.11 -1.11 3.13 -90.62 -0.28 -1.39 16 3 C -0.15 -1.86 8.22 37.15 0.31 -1.56 16 4 C 0.11 1.28 5.60 -4.04 -0.02 1.26 16 5 N -0.25 -3.26 3.06 -57.14 -0.17 -3.43 16 6 N -0.28 -3.56 11.90 30.59 0.36 -3.20 16 7 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 8 C -0.20 -2.21 8.67 -38.99 -0.34 -2.55 16 9 C -0.02 -0.31 5.29 -82.06 -0.43 -0.74 16 10 C 0.59 9.21 6.83 -12.63 -0.09 9.12 16 11 O -0.53 -9.46 11.46 5.26 0.06 -9.40 16 12 N -0.58 -8.76 2.91 -165.10 -0.48 -9.24 16 13 C 0.09 1.10 5.23 -3.23 -0.02 1.08 16 14 C -0.13 -1.58 5.94 -26.21 -0.16 -1.74 16 15 C -0.12 -1.93 5.45 -27.24 -0.15 -2.08 16 16 C 0.16 3.24 2.57 -68.36 -0.18 3.06 16 17 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 18 C 0.12 2.14 3.32 -66.81 -0.22 1.92 16 19 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 20 C -0.14 -2.77 5.17 -25.20 -0.13 -2.90 16 21 C 0.17 4.27 5.47 -1.70 -0.01 4.26 16 22 N -0.59 -14.82 3.35 -163.28 -0.55 -15.37 16 23 C -0.23 -6.15 9.94 -15.05 -0.15 -6.30 16 24 H 0.08 2.04 7.31 -52.49 -0.38 1.65 16 25 C -0.01 -0.18 5.49 -17.42 -0.10 -0.28 16 26 N -0.92 -26.88 10.46 55.49 0.58 -26.30 16 27 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 36 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.12 1.59 5.98 -51.93 -0.31 1.28 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.18 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.16 1.39 6.54 -52.48 -0.34 1.05 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.95 4.53 -51.93 -0.24 0.71 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 47 H 0.06 1.07 8.12 -51.92 -0.42 0.65 16 48 H 0.09 1.90 5.93 -51.93 -0.31 1.60 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.06 1.51 7.19 -51.93 -0.37 1.13 16 51 H 0.04 1.07 7.81 -51.93 -0.41 0.67 16 52 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -31.58 391.54 -9.73 -41.31 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.58 Total: 2.88 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.83 Total: -0.01 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.26 Total: -57.54 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.06 Total: -9.40 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.58 -9.73 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049502341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.625 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds