Wall clock time and date at job start Wed Apr 1 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 C 1.53000 * 109.47094 * 120.00242 * 2 1 3 5 5 N 1.46499 * 109.47112 * 174.99901 * 4 2 1 6 6 C 1.35034 * 124.88265 * 124.97401 * 5 4 2 7 7 C 1.35369 * 107.22835 * 179.72532 * 6 5 4 8 8 C 1.41510 * 105.49985 * 0.40959 * 7 6 5 9 9 C 1.47708 * 126.51520 * 179.84381 * 8 7 6 10 10 O 1.21566 * 120.00419 * 4.55044 * 9 8 7 11 11 N 1.34778 * 119.99660 * 184.54940 * 9 8 7 12 12 C 1.47857 * 122.22710 * 354.32317 * 11 9 8 13 13 C 1.52718 * 111.00679 * 232.43162 * 12 11 9 14 14 C 1.53870 * 111.52525 * 311.48466 * 13 12 11 15 15 C 1.51080 * 107.34056 * 56.93699 * 14 13 12 16 16 H 1.08995 * 108.73580 * 50.84544 * 15 14 13 17 17 C 1.45616 * 122.15983 * 174.23622 * 11 9 8 18 18 H 1.08999 * 111.65382 * 240.88643 * 17 11 9 19 19 C 1.53434 * 116.39128 * 9.95423 * 17 11 9 20 20 C 1.55467 * 101.67084 * 152.70428 * 19 17 11 21 21 N 1.45030 * 119.19245 * 176.11474 * 15 14 13 22 22 C 1.36942 * 126.56080 * 331.25105 * 21 15 14 23 23 H 1.08001 * 120.00016 * 0.02562 * 22 21 15 24 24 C 1.38809 * 120.00006 * 180.02562 * 22 21 15 25 25 N 1.31618 * 119.99972 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00131 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47219 * 59.99585 * 26 24 22 28 28 H 1.48495 * 109.46976 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47019 * 299.99972 * 26 24 22 30 30 N 1.28461 * 124.88443 * 304.96802 * 5 4 2 31 31 H 1.09001 * 109.46900 * 300.00560 * 1 2 3 32 32 H 1.09007 * 109.47109 * 60.00040 * 1 2 3 33 33 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46900 * 239.99440 * 2 1 3 35 35 H 1.09003 * 109.47096 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.46918 * 299.99471 * 3 2 1 37 37 H 1.09001 * 109.47607 * 59.99873 * 3 2 1 38 38 H 1.08994 * 109.47497 * 54.99298 * 4 2 1 39 39 H 1.09004 * 109.46917 * 295.00007 * 4 2 1 40 40 H 1.08001 * 126.38773 * 359.97438 * 6 5 4 41 41 H 1.07995 * 127.25434 * 180.26315 * 7 6 5 42 42 H 1.08998 * 109.16362 * 112.05554 * 12 11 9 43 43 H 1.08993 * 109.15870 * 352.80812 * 12 11 9 44 44 H 1.09004 * 109.06914 * 72.01713 * 13 12 11 45 45 H 1.09005 * 109.06777 * 190.96202 * 13 12 11 46 46 H 1.09001 * 109.87698 * 176.39402 * 14 13 12 47 47 H 1.08991 * 109.88440 * 297.47018 * 14 13 12 48 48 H 1.09002 * 110.98175 * 34.60910 * 19 17 11 49 49 H 1.08995 * 110.98622 * 270.80010 * 19 17 11 50 50 H 1.08996 * 109.96170 * 218.01871 * 20 19 17 51 51 H 1.09010 * 109.96139 * 96.78090 * 20 19 17 52 52 H 0.97001 * 120.00086 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.3450 -0.3870 2.1478 7 6 5.6024 -0.6685 1.7327 8 6 5.4535 -1.2910 0.4706 9 6 6.5401 -1.7861 -0.3989 10 8 7.6920 -1.7506 -0.0122 11 7 6.2543 -2.2774 -1.6210 12 6 4.8648 -2.4581 -2.0930 13 6 4.6400 -3.8804 -2.6016 14 6 5.7525 -4.3157 -3.5713 15 6 7.0672 -4.1765 -2.8400 16 1 6.9890 -4.6857 -1.8795 17 6 7.2946 -2.6633 -2.5639 18 1 7.2416 -2.0792 -3.4826 19 6 8.7279 -2.7072 -2.0179 20 6 9.3857 -3.7670 -2.9459 21 7 8.2892 -4.6028 -3.4944 22 6 8.4083 -5.5878 -4.4383 23 1 7.5343 -6.1326 -4.7635 24 6 9.6523 -5.8860 -4.9770 25 7 10.7175 -5.2225 -4.5803 26 14 9.8147 -7.2292 -6.2651 27 1 8.9850 -6.8841 -7.4474 28 1 11.2362 -7.3507 -6.6769 29 1 9.3517 -8.5200 -5.6953 30 7 4.1606 -1.3500 0.2211 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8901 37 1 1.6767 1.9564 0.8899 38 1 1.6053 -1.7198 1.2952 39 1 1.7516 -0.1584 2.1370 40 1 4.0690 0.0952 3.0739 41 1 6.5250 -0.4597 2.2537 42 1 4.6669 -1.7537 -2.9010 43 1 4.1787 -2.2599 -1.2697 44 1 4.6204 -4.5634 -1.7523 45 1 3.6804 -3.9269 -3.1167 46 1 5.6010 -5.3537 -3.8673 47 1 5.7486 -3.6739 -4.4522 48 1 8.7398 -3.0368 -0.9790 49 1 9.2159 -1.7384 -2.1242 50 1 10.0751 -4.3868 -2.3728 51 1 9.9177 -3.2714 -3.7581 52 1 11.5868 -5.4306 -4.9571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049505810.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:46 Heat of formation + Delta-G solvation = 88.229144 kcal Electronic energy + Delta-G solvation = -31954.041518 eV Core-core repulsion = 27956.739303 eV Total energy + Delta-G solvation = -3997.302215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.81492 -40.00300 -37.59748 -36.84380 -35.28276 -32.58552 -32.48943 -31.88807 -30.83513 -28.91824 -28.05109 -27.68623 -27.11023 -24.78208 -24.34758 -22.63263 -21.73417 -21.23120 -20.77010 -20.38805 -19.52227 -18.86903 -17.40958 -16.67890 -16.48807 -16.02580 -15.40897 -15.38590 -14.89244 -14.60379 -14.28389 -14.16085 -14.05053 -13.74957 -13.59118 -13.40559 -13.33379 -13.09490 -12.86195 -12.73814 -12.44889 -12.33064 -12.10477 -11.74871 -11.69322 -11.58848 -11.51959 -11.32129 -11.15740 -10.82931 -10.76852 -10.54121 -10.35658 -10.12636 -9.95926 -9.74797 -9.71807 -9.51357 -9.35679 -9.11269 -8.97267 -8.49140 -8.05532 -6.72994 -5.61448 -2.95222 1.59379 2.10312 2.23517 3.32987 3.46098 3.50088 3.51645 3.64279 3.94816 4.23987 4.42585 4.47449 4.57447 4.64555 4.70735 4.90425 4.99535 5.09347 5.13465 5.19348 5.33227 5.34138 5.38676 5.48950 5.51033 5.59257 5.61764 5.63815 5.66154 5.74427 5.75951 5.80109 5.85849 5.98508 6.01018 6.17996 6.25223 6.32311 6.43313 6.46897 6.54985 6.66069 6.73836 6.84991 6.96037 7.03332 7.34502 7.67500 7.75163 7.78400 7.90310 7.95132 8.34495 8.56907 9.28365 9.92204 10.61535 11.50613 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002703 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.526665 B =10356.121826 C =11335.278757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.149 4.149 4 C 0.123 3.877 5 N -0.285 5.285 6 C -0.020 4.020 7 C -0.180 4.180 8 C -0.003 4.003 9 C 0.600 3.400 10 O -0.526 6.526 11 N -0.585 5.585 12 C 0.087 3.913 13 C -0.126 4.126 14 C -0.116 4.116 15 C 0.160 3.840 16 H 0.017 0.983 17 C 0.115 3.885 18 H 0.080 0.920 19 C -0.135 4.135 20 C 0.173 3.827 21 N -0.593 5.593 22 C -0.224 4.224 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.920 5.920 26 Si 0.910 3.090 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 N -0.261 5.261 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.178 0.822 41 H 0.161 0.839 42 H 0.057 0.943 43 H 0.125 0.875 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.059 0.941 50 H 0.039 0.961 51 H 0.055 0.945 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.588 13.573 13.287 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.003 3.997 5 N -0.072 5.072 6 C -0.162 4.162 7 C -0.208 4.208 8 C -0.163 4.163 9 C 0.386 3.614 10 O -0.401 6.401 11 N -0.316 5.316 12 C -0.037 4.037 13 C -0.164 4.164 14 C -0.154 4.154 15 C 0.050 3.950 16 H 0.035 0.965 17 C 0.011 3.989 18 H 0.098 0.902 19 C -0.173 4.173 20 C 0.049 3.951 21 N -0.317 5.317 22 C -0.352 4.352 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 N -0.096 5.096 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.195 0.805 41 H 0.179 0.821 42 H 0.075 0.925 43 H 0.142 0.858 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.078 0.922 50 H 0.057 0.943 51 H 0.073 0.927 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.667 13.139 12.606 29.075 hybrid contribution 0.582 -0.441 -0.145 0.744 sum -22.085 12.698 12.461 28.360 Atomic orbital electron populations 1.21787 0.93604 1.02396 1.02554 1.21451 0.96492 0.97039 0.98001 1.21844 1.01513 0.95129 1.02120 1.22155 0.73934 1.02958 1.00636 1.45705 1.07518 1.40960 1.12980 1.22812 0.89934 1.06199 0.97294 1.21767 0.97945 1.04966 0.96087 1.22214 0.90379 1.06350 0.97402 1.16969 0.86443 0.77624 0.80358 1.90780 1.19635 1.56458 1.73214 1.47750 1.07975 1.61890 1.14022 1.22415 0.83024 0.96580 1.01646 1.21874 0.98851 0.96252 0.99470 1.21439 0.94534 1.01540 0.97926 1.20749 0.87993 0.91463 0.94763 0.96535 1.22404 0.88736 0.97128 0.90644 0.90232 1.23057 0.92733 1.00058 1.01477 1.21732 0.89486 0.89704 0.94213 1.44083 1.01170 1.40155 1.46332 1.18947 0.93649 1.09333 1.13317 0.90472 1.24796 0.95601 0.99795 1.00270 1.69943 0.98301 1.42900 1.45641 0.86233 0.76668 0.81618 0.81434 1.21255 1.21660 1.21272 1.73231 1.05480 1.17563 1.13314 0.92379 0.91697 0.92097 0.89165 0.92538 0.92046 0.92598 0.88895 0.88076 0.80473 0.82144 0.92472 0.85761 0.92167 0.91270 0.91680 0.91906 0.89397 0.92221 0.94295 0.92653 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.19 37.16 0.34 -0.20 16 2 C -0.11 -0.60 2.95 -90.62 -0.27 -0.87 16 3 C -0.15 -0.89 9.08 37.16 0.34 -0.56 16 4 C 0.12 0.65 5.79 -4.04 -0.02 0.62 16 5 N -0.28 -2.56 2.86 -61.33 -0.18 -2.74 16 6 C -0.02 -0.17 11.40 -17.17 -0.20 -0.36 16 7 C -0.18 -2.17 10.81 -39.36 -0.43 -2.59 16 8 C 0.00 -0.05 6.93 -82.76 -0.57 -0.62 16 9 C 0.60 10.89 7.72 -12.39 -0.10 10.79 16 10 O -0.53 -10.98 13.64 5.31 0.07 -10.90 16 11 N -0.58 -10.39 2.91 -165.22 -0.48 -10.87 16 12 C 0.09 1.25 6.21 -3.44 -0.02 1.23 16 13 C -0.13 -1.83 5.92 -26.42 -0.16 -1.99 16 14 C -0.12 -2.14 5.45 -27.24 -0.15 -2.29 16 15 C 0.16 3.55 2.58 -68.36 -0.18 3.37 16 16 H 0.02 0.41 8.04 -51.93 -0.42 0.00 16 17 C 0.12 2.36 3.33 -66.86 -0.22 2.14 16 18 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 19 C -0.13 -3.03 5.11 -25.20 -0.13 -3.16 16 20 C 0.17 4.55 5.47 -1.70 -0.01 4.54 16 21 N -0.59 -15.83 3.35 -163.28 -0.55 -16.37 16 22 C -0.22 -6.38 9.94 -15.06 -0.15 -6.53 16 23 H 0.08 2.10 7.31 -52.49 -0.38 1.72 16 24 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 25 N -0.92 -27.93 10.46 55.49 0.58 -27.35 16 26 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 N -0.26 -3.19 8.03 33.42 0.27 -2.92 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.66 7.96 -51.93 -0.41 0.25 16 35 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 36 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.27 8.04 -51.93 -0.42 -0.15 16 40 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.16 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.13 1.66 4.11 -71.04 -0.29 1.37 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 47 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 48 H 0.09 2.07 6.02 -51.93 -0.31 1.76 16 49 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.04 1.12 7.81 -51.93 -0.41 0.71 16 51 H 0.06 1.57 7.19 -51.92 -0.37 1.20 16 52 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -34.37 399.53 -10.17 -44.54 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -8.87 Total: -0.20 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.01 Total: 3.20 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.35 Total: -60.25 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.90 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.37 -10.17 -44.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049505810.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.765 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds