Wall clock time and date at job start Wed Apr 1 2020 04:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47606 * 2 1 4 4 C 1.53004 * 109.47388 * 120.00122 * 2 1 3 5 5 N 1.46503 * 109.46931 * 66.91130 * 4 2 1 6 6 C 1.35033 * 124.88087 * 117.77601 * 5 4 2 7 7 C 1.35370 * 107.22586 * 179.97438 * 6 5 4 8 8 C 1.41498 * 105.50523 * 359.97438 * 7 6 5 9 9 C 1.47700 * 126.52148 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00159 * 7.42236 * 9 8 7 11 11 N 1.34779 * 120.00501 * 187.42207 * 9 8 7 12 12 C 1.45736 * 117.75800 * 358.80551 * 11 9 8 13 13 C 1.53048 * 109.55946 * 141.10315 * 12 11 9 14 14 C 1.52942 * 108.49146 * 53.80393 * 13 12 11 15 15 C 1.53525 * 109.71308 * 293.95198 * 14 13 12 16 16 H 1.09003 * 111.61226 * 293.35480 * 15 14 13 17 17 C 1.44189 * 117.76272 * 178.78030 * 11 9 8 18 18 H 1.08996 * 109.22728 * 332.63484 * 17 11 9 19 19 C 1.54067 * 111.76369 * 93.53746 * 17 11 9 20 20 C 1.54059 * 103.73938 * 153.25677 * 19 17 11 21 21 N 1.46879 * 107.71109 * 342.87106 * 20 19 17 22 22 C 1.36936 * 125.58549 * 177.02980 * 21 20 19 23 23 H 1.07998 * 120.00075 * 180.02562 * 22 21 20 24 24 C 1.38818 * 119.99618 * 0.02562 * 22 21 20 25 25 N 1.31610 * 120.00237 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99640 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47152 * 269.99792 * 26 24 22 28 28 H 1.48497 * 109.47024 * 29.99975 * 26 24 22 29 29 H 1.48506 * 109.46716 * 149.99836 * 26 24 22 30 30 N 1.28466 * 124.88534 * 298.02456 * 5 4 2 31 31 H 1.09005 * 109.47142 * 301.93065 * 1 2 3 32 32 H 1.09002 * 109.47423 * 61.92882 * 1 2 3 33 33 H 1.09006 * 109.47267 * 181.93463 * 1 2 3 34 34 H 1.09005 * 109.47456 * 240.00101 * 2 1 3 35 35 H 1.08992 * 109.47574 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46845 * 300.00236 * 3 2 1 37 37 H 1.08994 * 109.46821 * 60.00033 * 3 2 1 38 38 H 1.08996 * 109.46746 * 306.91532 * 4 2 1 39 39 H 1.09003 * 109.47252 * 186.91345 * 4 2 1 40 40 H 1.07999 * 126.39057 * 359.94280 * 6 5 4 41 41 H 1.08007 * 127.24894 * 180.02562 * 7 6 5 42 42 H 1.08997 * 109.45401 * 261.13461 * 12 11 9 43 43 H 1.09001 * 109.45607 * 21.09692 * 12 11 9 44 44 H 1.09001 * 109.63414 * 173.50380 * 13 12 11 45 45 H 1.08994 * 109.63558 * 293.90585 * 13 12 11 46 46 H 1.09006 * 109.42119 * 54.10623 * 14 13 12 47 47 H 1.09006 * 109.42038 * 173.97561 * 14 13 12 48 48 H 1.09001 * 110.57044 * 34.69879 * 19 17 11 49 49 H 1.08988 * 110.57344 * 271.82235 * 19 17 11 50 50 H 1.09000 * 109.81220 * 223.31345 * 20 19 17 51 51 H 1.09010 * 109.80694 * 102.41877 * 20 19 17 52 52 H 0.97004 * 120.00379 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6921 -2.1421 1.1690 6 6 2.5846 -3.1548 1.1312 7 6 1.8795 -4.3081 1.0594 8 6 0.5188 -3.9201 1.0575 9 6 -0.6514 -4.8188 0.9909 10 8 -0.4985 -6.0225 1.0662 11 7 -1.8889 -4.3045 0.8466 12 6 -2.0186 -2.8542 0.7881 13 6 -3.0828 -2.4761 -0.2449 14 6 -4.3728 -3.2258 0.0912 15 6 -4.1598 -4.7342 -0.0992 16 1 -3.9976 -4.9877 -1.1469 17 6 -2.9937 -5.2270 0.7601 18 1 -2.6402 -6.1730 0.3500 19 6 -3.6349 -5.4812 2.1378 20 6 -5.0897 -5.8592 1.8001 21 7 -5.3560 -5.4251 0.4225 22 6 -6.5206 -5.6323 -0.2673 23 1 -6.6190 -5.2732 -1.2811 24 6 -7.5748 -6.3039 0.3366 25 7 -7.4547 -6.7419 1.5719 26 14 -9.1639 -6.5859 -0.6041 27 1 -10.0850 -5.4442 -0.3733 28 1 -8.8672 -6.6971 -2.0548 29 1 -9.8026 -7.8406 -0.1317 30 7 0.4942 -2.6036 1.1198 31 1 -0.3634 0.5435 0.8722 32 1 -0.3634 0.4836 -0.9068 33 1 -0.3634 -1.0271 0.0347 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.5792 -0.2839 2.1349 39 1 3.1230 -0.6154 1.3132 40 1 3.6604 -3.0619 1.1536 41 1 2.2728 -5.3130 1.0141 42 1 -2.3125 -2.4762 1.7673 43 1 -1.0628 -2.4154 0.5015 44 1 -3.2633 -1.4018 -0.2083 45 1 -2.7418 -2.7565 -1.2414 46 1 -4.6495 -3.0251 1.1262 47 1 -5.1712 -2.8874 -0.5694 48 1 -3.6055 -4.5774 2.7465 49 1 -3.1338 -6.3039 2.6475 50 1 -5.7710 -5.3542 2.4849 51 1 -5.2186 -6.9388 1.8787 52 1 -8.1914 -7.2109 1.9940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049505812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:52 Heat of formation + Delta-G solvation = 89.541773 kcal Electronic energy + Delta-G solvation = -32162.932261 eV Core-core repulsion = 28165.686966 eV Total energy + Delta-G solvation = -3997.245295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.90421 -40.09833 -37.76183 -36.82024 -35.31377 -32.69752 -32.44923 -31.94920 -30.94077 -29.00812 -28.28049 -27.52654 -27.11559 -24.73626 -24.29229 -22.81815 -21.94969 -21.56671 -20.70509 -20.22391 -19.76312 -18.22412 -17.47338 -16.94911 -16.80392 -16.20431 -15.69320 -15.13067 -14.76738 -14.67565 -14.22659 -14.20204 -14.19177 -13.94138 -13.66838 -13.38286 -13.23199 -13.00121 -12.79281 -12.72608 -12.47644 -12.31488 -12.15995 -11.91771 -11.60640 -11.41079 -11.27452 -11.25454 -10.96641 -10.84153 -10.80179 -10.63702 -10.54381 -10.08835 -10.05348 -9.98082 -9.61569 -9.51477 -9.45003 -9.27015 -9.16057 -8.53676 -8.14145 -6.79207 -5.65094 -2.99445 1.53465 2.05809 2.21132 3.31736 3.44027 3.48944 3.50973 3.55435 3.99560 4.18532 4.44181 4.49313 4.54021 4.63917 4.76078 4.86935 5.02556 5.11842 5.23198 5.26904 5.34403 5.41578 5.42351 5.51018 5.52406 5.56330 5.60307 5.63655 5.66561 5.71777 5.73546 5.80246 5.90951 6.01128 6.14333 6.22459 6.28228 6.32607 6.37045 6.43994 6.50164 6.67694 6.69015 6.70615 6.86111 7.11460 7.22606 7.63323 7.63810 7.72704 7.85090 7.90333 8.31293 8.48093 9.27264 9.87132 10.52861 11.45780 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.002792 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.313167 B =10027.670232 C =11086.566591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.122 3.878 5 N -0.287 5.287 6 C -0.018 4.018 7 C -0.179 4.179 8 C -0.007 4.007 9 C 0.587 3.413 10 O -0.535 6.535 11 N -0.571 5.571 12 C 0.081 3.919 13 C -0.131 4.131 14 C -0.129 4.129 15 C 0.161 3.839 16 H 0.055 0.945 17 C 0.135 3.865 18 H 0.091 0.909 19 C -0.149 4.149 20 C 0.180 3.820 21 N -0.596 5.596 22 C -0.225 4.225 23 H 0.078 0.922 24 C -0.008 4.008 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.290 1.290 28 H -0.282 1.282 29 H -0.291 1.291 30 N -0.255 5.255 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.179 0.821 41 H 0.161 0.839 42 H 0.057 0.943 43 H 0.130 0.870 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.040 0.960 51 H 0.052 0.948 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.381 16.707 -0.937 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.128 4.128 3 C -0.203 4.203 4 C 0.002 3.998 5 N -0.073 5.073 6 C -0.161 4.161 7 C -0.207 4.207 8 C -0.166 4.166 9 C 0.373 3.627 10 O -0.410 6.410 11 N -0.301 5.301 12 C -0.042 4.042 13 C -0.170 4.170 14 C -0.169 4.169 15 C 0.053 3.947 16 H 0.073 0.927 17 C 0.031 3.969 18 H 0.109 0.891 19 C -0.189 4.189 20 C 0.055 3.945 21 N -0.320 5.320 22 C -0.353 4.353 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.217 1.217 28 H -0.207 1.207 29 H -0.217 1.217 30 N -0.091 5.091 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.196 0.804 41 H 0.179 0.821 42 H 0.075 0.925 43 H 0.147 0.853 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 22.499 16.963 -0.801 28.189 hybrid contribution -0.349 -0.650 -0.343 0.814 sum 22.150 16.313 -1.144 27.533 Atomic orbital electron populations 1.22204 0.93520 1.04623 1.01980 1.21440 0.98034 0.96430 0.96906 1.21791 1.00897 0.94809 1.02837 1.22196 1.01700 0.75231 1.00719 1.45811 1.03259 1.07613 1.50664 1.22845 0.97409 0.87303 1.08568 1.21759 0.91377 0.99484 1.08075 1.22105 0.95175 0.89837 1.09463 1.17183 0.81630 0.86563 0.77323 1.90781 1.85241 1.14139 1.50864 1.46939 1.05763 1.07265 1.70144 1.22492 1.02708 0.79519 0.99468 1.21852 0.96464 0.99961 0.98718 1.22206 0.95611 0.97238 1.01884 1.20993 0.86848 0.91147 0.95729 0.92693 1.21087 0.86069 0.92300 0.97474 0.89080 1.22981 0.99294 1.00548 0.96059 1.21057 0.88297 0.99308 0.85861 1.44516 1.10564 1.65437 1.11527 1.19014 0.89193 1.30778 0.96337 0.90440 1.24800 0.98378 1.00636 0.96578 1.69975 1.31455 1.43159 1.12187 0.86125 0.83494 0.77298 0.78872 1.21700 1.20717 1.21720 1.73479 1.04122 1.11342 1.20124 0.92362 0.92471 0.89608 0.90509 0.92452 0.91706 0.92095 0.88635 0.87995 0.80378 0.82120 0.92490 0.85332 0.91443 0.92063 0.92016 0.92073 0.92619 0.91865 0.94199 0.92980 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 8.97 37.15 0.33 -0.91 16 2 C -0.11 -0.60 3.11 -90.62 -0.28 -0.89 16 3 C -0.15 -0.55 9.19 37.16 0.34 -0.21 16 4 C 0.12 0.64 5.84 -4.04 -0.02 0.61 16 5 N -0.29 -2.55 3.36 -61.33 -0.21 -2.76 16 6 C -0.02 -0.15 11.40 -17.17 -0.20 -0.35 16 7 C -0.18 -2.10 10.82 -39.36 -0.43 -2.53 16 8 C -0.01 -0.09 6.78 -82.77 -0.56 -0.66 16 9 C 0.59 10.48 7.59 -12.39 -0.09 10.38 16 10 O -0.53 -11.12 16.22 5.30 0.09 -11.03 16 11 N -0.57 -10.01 2.80 -168.87 -0.47 -10.48 16 12 C 0.08 1.19 5.79 -4.43 -0.03 1.17 16 13 C -0.13 -1.91 6.10 -26.74 -0.16 -2.07 16 14 C -0.13 -2.41 5.32 -26.49 -0.14 -2.55 16 15 C 0.16 3.46 3.33 -67.02 -0.22 3.23 16 16 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 17 C 0.14 2.75 2.69 -68.60 -0.18 2.56 16 18 H 0.09 2.03 7.11 -51.93 -0.37 1.66 16 19 C -0.15 -3.17 6.45 -25.62 -0.17 -3.34 16 20 C 0.18 4.57 5.39 -3.28 -0.02 4.56 16 21 N -0.60 -15.44 2.92 -163.52 -0.48 -15.92 16 22 C -0.22 -6.31 10.27 -15.06 -0.15 -6.46 16 23 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 24 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -27.50 10.29 55.49 0.57 -26.93 16 26 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 N -0.26 -3.06 6.42 33.42 0.21 -2.84 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.83 3.78 -51.93 -0.20 0.64 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.25 8.04 -51.93 -0.42 -0.17 16 40 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.16 1.77 8.06 -52.48 -0.42 1.34 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.13 1.70 1.91 -107.79 -0.21 1.49 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 1.23 8.02 -51.93 -0.42 0.82 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.06 1.32 8.14 -51.94 -0.42 0.90 16 50 H 0.04 1.10 7.60 -51.93 -0.39 0.71 16 51 H 0.05 1.47 7.25 -51.92 -0.38 1.09 16 52 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -33.68 397.35 -10.08 -43.76 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.69 Total: 0.56 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.08 Total: 2.24 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.37 Total: -58.93 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.68 -10.08 -43.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049505812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.303 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds