Wall clock time and date at job start Wed Apr 1 2020 04:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47240 * 2 1 4 4 C 1.53002 * 109.47089 * 119.99968 * 2 1 3 5 5 N 1.46500 * 109.47072 * 174.99992 * 4 2 1 6 6 C 1.35035 * 124.88219 * 125.00204 * 5 4 2 7 7 C 1.35365 * 107.22653 * 180.02562 * 6 5 4 8 8 C 1.41499 * 105.50686 * 359.97438 * 7 6 5 9 9 C 1.47710 * 126.52328 * 179.97438 * 8 7 6 10 10 O 1.21574 * 119.99639 * 7.01909 * 9 8 7 11 11 N 1.34774 * 120.00319 * 187.01641 * 9 8 7 12 12 C 1.46797 * 119.57797 * 177.17272 * 11 9 8 13 13 C 1.53465 * 107.59505 * 232.02900 * 12 11 9 14 14 C 1.52725 * 108.44262 * 301.92451 * 13 12 11 15 15 C 1.53012 * 110.80631 * 63.77046 * 14 13 12 16 16 H 1.09001 * 111.38628 * 68.76039 * 15 14 13 17 17 C 1.45124 * 119.57415 * 357.15341 * 11 9 8 18 18 H 1.08997 * 109.97109 * 11.95520 * 17 11 9 19 19 C 1.54415 * 111.60709 * 248.66663 * 17 11 9 20 20 C 1.54569 * 102.44842 * 203.42083 * 19 17 11 21 21 N 1.47115 * 107.25392 * 21.67960 * 20 19 17 22 22 C 1.36934 * 125.76633 * 182.62131 * 21 20 19 23 23 H 1.07997 * 119.99949 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00233 * 359.96248 * 22 21 20 25 25 N 1.31621 * 119.99638 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00054 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47235 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46878 * 120.00395 * 26 24 22 29 29 H 1.48498 * 109.46875 * 240.00197 * 26 24 22 30 30 N 1.28465 * 124.88485 * 305.32375 * 5 4 2 31 31 H 1.08998 * 109.47263 * 300.00462 * 1 2 3 32 32 H 1.09005 * 109.46869 * 59.99997 * 1 2 3 33 33 H 1.08997 * 109.47312 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47078 * 239.99957 * 2 1 3 35 35 H 1.08993 * 109.46713 * 60.00196 * 3 2 1 36 36 H 1.09000 * 109.46725 * 179.97438 * 3 2 1 37 37 H 1.08995 * 109.46703 * 299.99992 * 3 2 1 38 38 H 1.09000 * 109.47006 * 54.99798 * 4 2 1 39 39 H 1.09004 * 109.47201 * 294.99884 * 4 2 1 40 40 H 1.07993 * 126.38751 * 0.02562 * 6 5 4 41 41 H 1.08008 * 127.24871 * 179.97438 * 7 6 5 42 42 H 1.09001 * 109.83505 * 351.56196 * 12 11 9 43 43 H 1.09008 * 109.83233 * 112.44538 * 12 11 9 44 44 H 1.09005 * 109.63578 * 61.61088 * 13 12 11 45 45 H 1.09002 * 109.63716 * 182.02360 * 13 12 11 46 46 H 1.09000 * 109.21262 * 303.42258 * 14 13 12 47 47 H 1.09007 * 109.20916 * 184.10855 * 14 13 12 48 48 H 1.09006 * 110.81574 * 321.66022 * 19 17 11 49 49 H 1.09000 * 110.81133 * 84.98384 * 19 17 11 50 50 H 1.09001 * 109.88124 * 141.08845 * 20 19 17 51 51 H 1.08996 * 109.88518 * 262.25848 * 20 19 17 52 52 H 0.97000 * 119.99768 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3450 -0.3874 2.1481 7 6 5.6026 -0.6627 1.7298 8 6 5.4536 -1.2902 0.4704 9 6 6.5402 -1.7841 -0.3998 10 8 7.6878 -1.7841 0.0015 11 7 6.2595 -2.2347 -1.6386 12 6 7.3531 -2.6650 -2.5182 13 6 7.1942 -1.9238 -3.8526 14 6 5.8181 -2.2532 -4.4273 15 6 4.7079 -1.7308 -3.5130 16 1 4.6722 -0.6414 -3.5136 17 6 4.8798 -2.2887 -2.0856 18 1 4.2421 -1.7409 -1.3919 19 6 4.3902 -3.7445 -2.2446 20 6 3.2272 -3.5968 -3.2519 21 7 3.4378 -2.3357 -3.9797 22 6 2.6014 -1.8092 -4.9275 23 1 2.8479 -0.8723 -5.4048 24 6 1.4368 -2.4798 -5.2750 25 7 1.1362 -3.6215 -4.6931 26 14 0.2962 -1.7620 -6.5685 27 1 0.8570 -0.4805 -7.0667 28 1 0.1655 -2.7171 -7.6981 29 1 -1.0405 -1.5182 -5.9692 30 7 4.1609 -1.3442 0.2182 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6053 -1.7198 1.2952 39 1 1.7516 -0.1583 2.1370 40 1 4.0689 0.0937 3.0747 41 1 6.5256 -0.4484 2.2482 42 1 8.3123 -2.4122 -2.0665 43 1 7.2940 -3.7411 -2.6824 44 1 7.2744 -0.8495 -3.6866 45 1 7.9711 -2.2466 -4.5457 46 1 5.7208 -3.3342 -4.5281 47 1 5.7200 -1.7919 -5.4101 48 1 5.1789 -4.3760 -2.6535 49 1 4.0344 -4.1396 -1.2930 50 1 3.2334 -4.4334 -3.9506 51 1 2.2770 -3.5631 -2.7190 52 1 0.3222 -4.0900 -4.9356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049505814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:57 Heat of formation + Delta-G solvation = 82.462890 kcal Electronic energy + Delta-G solvation = -33183.710833 eV Core-core repulsion = 29186.158574 eV Total energy + Delta-G solvation = -3997.552259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.66580 -39.96742 -37.88634 -36.50286 -34.86396 -32.98258 -32.00281 -31.86132 -30.65242 -28.92422 -28.19744 -27.26401 -26.87870 -24.77045 -24.28505 -22.70885 -21.79982 -21.31944 -20.40434 -19.97008 -19.68667 -18.46940 -17.20209 -16.71633 -16.51280 -16.21777 -15.50070 -15.03506 -14.72446 -14.61154 -14.39765 -14.01660 -13.71714 -13.62253 -13.53192 -13.24550 -13.17747 -13.07640 -12.67412 -12.41435 -12.36687 -12.04823 -12.01313 -11.81089 -11.41867 -11.28754 -11.08623 -11.03057 -10.88787 -10.78991 -10.76302 -10.54961 -10.47311 -10.37937 -10.04856 -10.00836 -9.72510 -9.58715 -9.26915 -8.99525 -8.95813 -8.60309 -8.11311 -6.81635 -5.69553 -3.02538 1.74406 2.21514 2.46217 3.35448 3.38549 3.45106 3.46447 3.64771 4.26327 4.48238 4.64313 4.70169 4.75469 4.94239 5.00902 5.18701 5.32080 5.36765 5.37917 5.43479 5.51243 5.53715 5.56960 5.60316 5.70012 5.70941 5.74796 5.77946 5.78713 5.82981 5.95448 6.01949 6.11517 6.20143 6.22059 6.28118 6.29426 6.32493 6.41685 6.45045 6.52499 6.62131 6.65637 6.79036 7.00373 7.09125 7.25583 7.59129 7.66457 7.74217 7.85413 8.09199 8.26120 8.49093 9.23083 9.82809 10.50359 11.41546 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008621 B = 0.005391 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.110213 B = 5192.990182 C = 7632.240091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.123 3.877 5 N -0.278 5.278 6 C -0.021 4.021 7 C -0.182 4.182 8 C -0.016 4.016 9 C 0.599 3.401 10 O -0.550 6.550 11 N -0.578 5.578 12 C 0.112 3.888 13 C -0.131 4.131 14 C -0.131 4.131 15 C 0.157 3.843 16 H 0.055 0.945 17 C 0.093 3.907 18 H 0.152 0.848 19 C -0.149 4.149 20 C 0.185 3.815 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.921 5.921 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 N -0.241 5.241 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.177 0.823 41 H 0.159 0.841 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.038 0.962 51 H 0.050 0.950 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 6.461 13.512 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.203 4.203 4 C 0.003 3.997 5 N -0.065 5.065 6 C -0.163 4.163 7 C -0.210 4.210 8 C -0.175 4.175 9 C 0.386 3.614 10 O -0.427 6.427 11 N -0.308 5.308 12 C -0.010 4.010 13 C -0.170 4.170 14 C -0.171 4.171 15 C 0.049 3.951 16 H 0.073 0.927 17 C -0.012 4.012 18 H 0.168 0.832 19 C -0.188 4.188 20 C 0.060 3.940 21 N -0.320 5.320 22 C -0.348 4.348 23 H 0.094 0.906 24 C -0.203 4.203 25 N -0.569 5.569 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 N -0.076 5.076 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.195 0.805 41 H 0.176 0.824 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.056 0.944 51 H 0.068 0.932 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.898 6.050 12.829 14.477 hybrid contribution -0.220 0.459 -0.249 0.566 sum 2.678 6.509 12.580 14.415 Atomic orbital electron populations 1.21738 0.93553 1.02576 1.02153 1.21467 0.96736 0.96799 0.98197 1.21816 1.01082 0.95442 1.01918 1.22225 0.73507 1.03216 1.00758 1.45884 1.07835 1.40424 1.12359 1.22816 0.89908 1.06189 0.97427 1.21671 0.97794 1.05368 0.96215 1.21964 0.90576 1.07501 0.97433 1.17088 0.86389 0.77096 0.80848 1.90726 1.20487 1.57529 1.73992 1.47528 1.08388 1.61810 1.13123 1.21697 0.90448 0.98678 0.90195 1.21913 0.98726 1.00378 0.96007 1.22130 0.93280 1.01830 0.99871 1.21328 0.87326 0.95917 0.90570 0.92690 1.23026 0.80729 0.98635 0.98855 0.83194 1.23052 0.99964 0.95637 1.00139 1.21104 0.93153 0.88566 0.91141 1.44665 1.20442 1.21959 1.44908 1.19061 0.99608 1.03777 1.12391 0.90589 1.24742 0.98268 0.97249 1.00058 1.69976 1.25869 1.16163 1.44856 0.86121 0.80851 0.78097 0.81185 1.20607 1.21873 1.21883 1.73366 1.05159 1.16948 1.12117 0.92883 0.91527 0.91972 0.88194 0.92982 0.92913 0.91887 0.88707 0.88238 0.80538 0.82381 0.89305 0.91541 0.92012 0.91418 0.91944 0.92387 0.92696 0.92436 0.94390 0.93196 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 2 C -0.11 -1.30 2.95 -90.62 -0.27 -1.57 16 3 C -0.15 -1.58 9.08 37.16 0.34 -1.24 16 4 C 0.12 1.19 5.79 -4.04 -0.02 1.17 16 5 N -0.28 -3.43 2.86 -61.33 -0.18 -3.61 16 6 C -0.02 -0.22 11.40 -17.17 -0.20 -0.41 16 7 C -0.18 -2.42 10.81 -39.36 -0.43 -2.84 16 8 C -0.02 -0.26 6.86 -82.76 -0.57 -0.82 16 9 C 0.60 10.81 7.66 -12.39 -0.09 10.72 16 10 O -0.55 -10.76 16.27 5.30 0.09 -10.67 16 11 N -0.58 -10.15 2.73 -166.17 -0.45 -10.60 16 12 C 0.11 1.76 6.15 -3.64 -0.02 1.74 16 13 C -0.13 -2.00 6.11 -26.63 -0.16 -2.17 16 14 C -0.13 -2.43 5.10 -26.87 -0.14 -2.57 16 15 C 0.16 3.24 3.60 -66.35 -0.24 3.00 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.09 1.75 2.90 -67.29 -0.20 1.55 16 18 H 0.15 2.91 3.75 -123.37 -0.46 2.45 16 19 C -0.15 -2.93 6.08 -25.16 -0.15 -3.08 16 20 C 0.19 4.43 5.19 -2.88 -0.01 4.41 16 21 N -0.60 -14.55 2.91 -162.19 -0.47 -15.02 16 22 C -0.22 -5.90 10.29 -15.06 -0.16 -6.05 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 25 N -0.92 -26.26 10.33 55.49 0.57 -25.69 16 26 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 N -0.24 -3.80 7.86 33.42 0.26 -3.53 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 1.57 7.95 -51.93 -0.41 1.16 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.65 7.75 -51.93 -0.40 0.25 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.63 8.04 -51.93 -0.42 0.21 16 40 H 0.18 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 42 H 0.09 1.37 6.96 -51.93 -0.36 1.01 16 43 H 0.07 1.01 7.53 -51.92 -0.39 0.62 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.24 7.12 -51.93 -0.37 0.87 16 47 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 48 H 0.05 1.05 6.81 -51.93 -0.35 0.69 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.04 1.01 7.60 -51.93 -0.39 0.61 16 51 H 0.05 1.31 7.30 -51.93 -0.38 0.93 16 52 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -31.58 401.11 -10.22 -41.79 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.99 Total: 4.25 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.07 Total: 0.42 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.27 Total: -58.46 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.58 -10.22 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049505814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.255 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds