Wall clock time and date at job start Wed Apr 1 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47068 * 2 1 4 4 C 1.53001 * 109.47267 * 120.00105 * 2 1 3 5 5 N 1.46500 * 109.46950 * 174.99684 * 4 2 1 6 6 C 1.35035 * 124.87886 * 124.97500 * 5 4 2 7 7 C 1.35374 * 107.22670 * 179.76022 * 6 5 4 8 8 C 1.41497 * 105.49986 * 0.36323 * 7 6 5 9 9 C 1.47705 * 126.51544 * 179.89921 * 8 7 6 10 10 O 1.21569 * 120.00479 * 5.21523 * 9 8 7 11 11 N 1.34787 * 120.00030 * 185.21451 * 9 8 7 12 12 C 1.47849 * 122.22599 * 354.41939 * 11 9 8 13 13 C 1.52715 * 111.06134 * 127.49891 * 12 11 9 14 14 C 1.53870 * 111.52794 * 48.52657 * 13 12 11 15 15 C 1.51079 * 107.39838 * 303.04052 * 14 13 12 16 16 H 1.08998 * 108.73530 * 308.57238 * 15 14 13 17 17 C 1.45728 * 122.22567 * 174.39885 * 11 9 8 18 18 H 1.09000 * 111.07060 * 119.49579 * 17 11 9 19 19 C 1.53435 * 116.37311 * 350.98616 * 17 11 9 20 20 C 1.55470 * 101.67081 * 207.28645 * 19 17 11 21 21 N 1.45432 * 120.14650 * 184.07566 * 15 14 13 22 22 C 1.36938 * 126.01612 * 29.03262 * 21 15 14 23 23 H 1.07991 * 120.00299 * 5.84872 * 22 21 15 24 24 C 1.38810 * 119.99361 * 185.84989 * 22 21 15 25 25 N 1.31621 * 120.00424 * 5.06343 * 24 22 21 26 26 Si 1.86802 * 119.99775 * 185.06383 * 24 22 21 27 27 H 1.48503 * 109.47089 * 85.00249 * 26 24 22 28 28 H 1.48500 * 109.47392 * 205.00017 * 26 24 22 29 29 H 1.48502 * 109.47264 * 325.00082 * 26 24 22 30 30 N 1.28468 * 124.88796 * 304.97729 * 5 4 2 31 31 H 1.08990 * 109.46939 * 299.99768 * 1 2 3 32 32 H 1.09000 * 109.46948 * 60.00168 * 1 2 3 33 33 H 1.08996 * 109.47084 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47071 * 240.00198 * 2 1 3 35 35 H 1.09007 * 109.46958 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47099 * 299.99740 * 3 2 1 37 37 H 1.09003 * 109.47278 * 60.00571 * 3 2 1 38 38 H 1.09001 * 109.46804 * 55.00184 * 4 2 1 39 39 H 1.08994 * 109.47402 * 294.99940 * 4 2 1 40 40 H 1.08002 * 126.39043 * 359.96890 * 6 5 4 41 41 H 1.08002 * 127.24769 * 180.23824 * 7 6 5 42 42 H 1.09004 * 109.15922 * 7.09017 * 12 11 9 43 43 H 1.08998 * 109.15933 * 247.90188 * 12 11 9 44 44 H 1.08998 * 109.06936 * 287.99712 * 13 12 11 45 45 H 1.09005 * 109.01112 * 169.01591 * 13 12 11 46 46 H 1.09003 * 109.88118 * 62.53035 * 14 13 12 47 47 H 1.08995 * 109.88441 * 183.54139 * 14 13 12 48 48 H 1.08995 * 110.98586 * 325.38170 * 19 17 11 49 49 H 1.08999 * 110.98392 * 89.19049 * 19 17 11 50 50 H 1.09004 * 109.95738 * 141.98005 * 20 19 17 51 51 H 1.09000 * 109.95821 * 263.18377 * 20 19 17 52 52 H 0.96998 * 119.99967 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.3451 -0.3870 2.1477 7 6 5.6025 -0.6678 1.7322 8 6 5.4536 -1.2908 0.4705 9 6 6.5401 -1.7865 -0.3987 10 8 7.6908 -1.7621 -0.0073 11 7 6.2558 -2.2659 -1.6259 12 6 4.8670 -2.4311 -2.1056 13 6 4.6672 -1.7446 -3.4550 14 6 5.7807 -2.1182 -4.4490 15 6 7.0986 -1.7424 -3.8131 16 1 7.0424 -0.7072 -3.4765 17 6 7.2967 -2.6556 -2.5684 18 1 7.2123 -3.7099 -2.8317 19 6 8.7369 -2.2954 -2.1804 20 6 9.4156 -2.1692 -3.5735 21 7 8.3388 -1.8964 -4.5570 22 6 8.4766 -1.8192 -5.9173 23 1 7.6341 -1.5352 -6.5302 24 6 9.6995 -2.1061 -6.5082 25 7 10.6980 -2.5482 -5.7734 26 14 9.9280 -1.8649 -8.3464 27 1 10.2892 -0.4504 -8.6189 28 1 11.0131 -2.7551 -8.8315 29 1 8.6633 -2.1972 -9.0503 30 7 4.1607 -1.3499 0.2209 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 1.6055 -1.7198 1.2951 39 1 1.7518 -0.1584 2.1369 40 1 4.0691 0.0953 3.0738 41 1 6.5252 -0.4583 2.2530 42 1 4.1828 -1.9952 -1.3775 43 1 4.6484 -3.4939 -2.2091 44 1 4.6681 -0.6645 -3.3086 45 1 3.7048 -2.0469 -3.8681 46 1 5.7568 -3.1898 -4.6468 47 1 5.6474 -1.5665 -5.3795 48 1 8.7709 -1.3482 -1.6424 49 1 9.1941 -3.0924 -1.5941 50 1 10.1301 -1.3461 -3.5660 51 1 9.9234 -3.1002 -3.8256 52 1 11.5523 -2.7490 -6.1864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049505815.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:07 Heat of formation + Delta-G solvation = 86.183765 kcal Electronic energy + Delta-G solvation = -32097.177834 eV Core-core repulsion = 28099.786924 eV Total energy + Delta-G solvation = -3997.390909 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.81275 -39.96606 -37.58312 -36.82442 -35.27154 -32.57491 -32.48753 -31.88663 -30.83521 -28.92098 -28.06412 -27.65497 -27.11187 -24.79223 -24.34420 -22.63446 -21.72487 -21.24877 -20.77979 -20.36409 -19.50138 -18.84216 -17.43490 -16.66989 -16.49308 -16.02134 -15.47028 -15.33922 -14.90837 -14.60048 -14.30958 -14.09409 -13.98044 -13.73235 -13.67701 -13.39624 -13.31771 -13.11578 -12.77839 -12.71037 -12.42894 -12.33666 -12.11919 -11.77261 -11.68440 -11.58516 -11.49408 -11.30364 -11.15625 -10.86383 -10.76540 -10.47620 -10.37017 -10.12275 -9.94631 -9.75512 -9.72251 -9.56028 -9.35796 -9.12412 -9.01014 -8.54441 -8.05058 -6.73338 -5.60229 -2.97486 1.59766 2.10889 2.23998 3.32799 3.45441 3.50016 3.51711 3.65687 3.95918 4.25788 4.44203 4.48780 4.56733 4.65315 4.72072 4.91346 4.99919 5.10070 5.16455 5.19422 5.32961 5.37028 5.41721 5.48217 5.51400 5.61689 5.62173 5.63324 5.66760 5.73772 5.79085 5.83175 5.84714 5.97872 6.00407 6.17937 6.24183 6.32323 6.42549 6.47077 6.53980 6.65361 6.74634 6.84358 6.96234 7.00724 7.31200 7.61729 7.74765 7.78514 7.91520 7.94648 8.35267 8.56442 9.27274 9.91193 10.59635 11.48807 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002892 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.320213 B = 9678.050151 C =10814.007183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.149 4.149 4 C 0.124 3.876 5 N -0.285 5.285 6 C -0.019 4.019 7 C -0.180 4.180 8 C -0.002 4.002 9 C 0.599 3.401 10 O -0.527 6.527 11 N -0.585 5.585 12 C 0.082 3.918 13 C -0.124 4.124 14 C -0.115 4.115 15 C 0.158 3.842 16 H 0.018 0.982 17 C 0.118 3.882 18 H 0.079 0.921 19 C -0.128 4.128 20 C 0.168 3.832 21 N -0.592 5.592 22 C -0.224 4.224 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.919 5.919 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 N -0.261 5.261 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.178 0.822 41 H 0.161 0.839 42 H 0.129 0.871 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.030 0.970 51 H 0.069 0.931 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.638 4.342 17.133 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.003 3.997 5 N -0.072 5.072 6 C -0.162 4.162 7 C -0.208 4.208 8 C -0.162 4.162 9 C 0.385 3.615 10 O -0.402 6.402 11 N -0.317 5.317 12 C -0.041 4.041 13 C -0.163 4.163 14 C -0.154 4.154 15 C 0.049 3.951 16 H 0.035 0.965 17 C 0.013 3.987 18 H 0.097 0.903 19 C -0.166 4.166 20 C 0.043 3.957 21 N -0.317 5.317 22 C -0.353 4.353 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.567 5.567 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 N -0.096 5.096 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.195 0.805 41 H 0.179 0.821 42 H 0.145 0.855 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.049 0.951 51 H 0.087 0.913 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.725 3.983 16.424 28.320 hybrid contribution 0.626 0.381 -0.427 0.848 sum -22.099 4.364 15.996 27.628 Atomic orbital electron populations 1.21782 0.93609 1.02340 1.02585 1.21458 0.96489 0.97103 0.97962 1.21848 1.01571 0.95081 1.02158 1.22156 0.73920 1.02906 1.00683 1.45717 1.07519 1.41044 1.12886 1.22813 0.89931 1.06146 0.97303 1.21765 0.97943 1.04954 0.96121 1.22192 0.90359 1.06363 0.97312 1.16951 0.86425 0.77746 0.80374 1.90794 1.19688 1.56576 1.73160 1.47837 1.08040 1.62373 1.13432 1.22495 0.83185 1.00694 0.97760 1.21852 0.98821 1.00695 0.94944 1.21422 0.94408 1.01426 0.98105 1.20875 0.87895 0.95661 0.90672 0.96510 1.22458 0.88595 0.98599 0.89007 0.90318 1.22902 0.92827 1.02190 0.98704 1.21830 0.89606 1.01051 0.83208 1.44258 1.01270 1.83851 1.02324 1.18993 0.96416 1.39124 0.80744 0.90476 1.24818 0.96462 1.01345 0.97840 1.69928 1.02877 1.50143 1.33710 0.86179 0.77291 0.77467 0.85060 1.21664 1.21757 1.20802 1.73162 1.05486 1.17948 1.12997 0.92384 0.91664 0.92149 0.89145 0.92502 0.91967 0.92614 0.88936 0.88078 0.80463 0.82146 0.85457 0.92385 0.92220 0.91314 0.91892 0.91713 0.90415 0.91843 0.95149 0.91269 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.19 37.16 0.34 -0.23 16 2 C -0.11 -0.64 2.95 -90.62 -0.27 -0.91 16 3 C -0.15 -0.98 9.08 37.16 0.34 -0.65 16 4 C 0.12 0.66 5.79 -4.04 -0.02 0.63 16 5 N -0.28 -2.59 2.86 -61.33 -0.18 -2.76 16 6 C -0.02 -0.17 11.40 -17.16 -0.20 -0.36 16 7 C -0.18 -2.19 10.81 -39.36 -0.43 -2.61 16 8 C 0.00 -0.03 6.93 -82.77 -0.57 -0.61 16 9 C 0.60 10.92 7.64 -12.39 -0.09 10.82 16 10 O -0.53 -11.01 13.88 5.30 0.07 -10.94 16 11 N -0.59 -10.44 2.91 -165.05 -0.48 -10.92 16 12 C 0.08 1.19 6.30 -3.45 -0.02 1.17 16 13 C -0.12 -1.80 5.93 -26.42 -0.16 -1.96 16 14 C -0.11 -2.12 5.52 -27.24 -0.15 -2.27 16 15 C 0.16 3.50 2.61 -68.07 -0.18 3.32 16 16 H 0.02 0.41 8.06 -51.93 -0.42 0.00 16 17 C 0.12 2.42 3.28 -66.72 -0.22 2.20 16 18 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 19 C -0.13 -2.87 4.98 -25.19 -0.13 -2.99 16 20 C 0.17 4.38 5.59 -1.70 -0.01 4.37 16 21 N -0.59 -15.76 3.36 -162.91 -0.55 -16.31 16 22 C -0.22 -6.36 9.92 -15.06 -0.15 -6.51 16 23 H 0.08 2.10 7.43 -52.49 -0.39 1.71 16 24 C -0.01 -0.24 5.47 -17.43 -0.10 -0.33 16 25 N -0.92 -27.76 10.51 55.49 0.58 -27.17 16 26 Si 0.91 22.56 29.56 -169.99 -5.02 17.53 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 N -0.26 -3.21 8.02 33.42 0.27 -2.94 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.69 7.96 -51.92 -0.41 0.28 16 35 H 0.06 0.51 7.75 -51.93 -0.40 0.11 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.28 8.04 -51.93 -0.42 -0.14 16 40 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.16 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.13 1.70 3.94 -84.08 -0.33 1.37 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 47 H 0.06 1.23 7.77 -51.93 -0.40 0.82 16 48 H 0.08 1.81 6.32 -51.93 -0.33 1.48 16 49 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 50 H 0.03 0.86 8.10 -51.93 -0.42 0.44 16 51 H 0.07 1.97 6.77 -51.93 -0.35 1.62 16 52 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -34.25 400.07 -10.21 -44.46 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.93 Total: -0.07 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -2.01 Total: 3.09 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.35 Total: -60.11 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.25 -10.21 -44.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049505815.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.641 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds