Wall clock time and date at job start Wed Apr 1 2020 04:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 C 1.53005 * 109.47202 * 240.00035 * 2 1 3 5 5 N 1.46500 * 109.47086 * 120.00220 * 2 1 3 6 6 C 1.34257 * 125.75862 * 75.00293 * 5 2 1 7 7 C 1.38040 * 107.42264 * 179.97438 * 6 5 2 8 8 C 1.47425 * 126.41727 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99938 * 332.12694 * 8 7 6 10 10 N 1.34776 * 119.99978 * 152.12224 * 8 7 6 11 11 C 1.47854 * 122.22854 * 354.01948 * 10 8 7 12 12 C 1.52726 * 111.05675 * 232.21412 * 11 10 8 13 13 C 1.53866 * 111.52336 * 311.46876 * 12 11 10 14 14 C 1.51080 * 107.34473 * 56.92809 * 13 12 11 15 15 H 1.09003 * 108.73396 * 51.46481 * 14 13 12 16 16 C 1.45731 * 122.22833 * 173.72799 * 10 8 7 17 17 H 1.09004 * 111.06604 * 240.78813 * 16 10 8 18 18 C 1.53430 * 116.37592 * 10.16110 * 16 10 8 19 19 C 1.55466 * 101.67093 * 152.72640 * 18 16 10 20 20 N 1.45021 * 119.19096 * 176.10847 * 14 13 12 21 21 C 1.36941 * 126.55954 * 331.17180 * 20 14 13 22 22 H 1.07997 * 119.99633 * 0.02562 * 21 20 14 23 23 C 1.38811 * 119.99662 * 179.97438 * 21 20 14 24 24 N 1.31609 * 120.00401 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99736 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47342 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46930 * 120.00032 * 25 23 21 28 28 H 1.48499 * 109.47367 * 240.00508 * 25 23 21 29 29 C 1.41296 * 107.16621 * 0.22347 * 7 6 5 30 30 N 1.30441 * 108.02173 * 359.61427 * 29 7 6 31 31 H 1.09004 * 109.46966 * 299.99725 * 1 2 3 32 32 H 1.09003 * 109.46743 * 59.99874 * 1 2 3 33 33 H 1.09005 * 109.46751 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47169 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47199 * 300.00308 * 3 2 1 36 36 H 1.09001 * 109.47201 * 59.99812 * 3 2 1 37 37 H 1.08998 * 109.46689 * 299.99921 * 4 2 1 38 38 H 1.09004 * 109.46821 * 59.99981 * 4 2 1 39 39 H 1.08999 * 109.47143 * 180.02562 * 4 2 1 40 40 H 1.08001 * 126.28791 * 359.95046 * 6 5 2 41 41 H 1.08997 * 109.16360 * 352.61610 * 11 10 8 42 42 H 1.08995 * 109.16202 * 111.86220 * 11 10 8 43 43 H 1.08998 * 109.06784 * 71.99927 * 12 11 10 44 44 H 1.08998 * 109.06445 * 191.01420 * 12 11 10 45 45 H 1.09001 * 109.87888 * 176.38834 * 13 12 11 46 46 H 1.08999 * 109.88182 * 297.39043 * 13 12 11 47 47 H 1.09001 * 110.98679 * 270.82233 * 18 16 10 48 48 H 1.09004 * 110.98605 * 34.62789 * 18 16 10 49 49 H 1.08992 * 109.96525 * 96.77948 * 19 18 16 50 50 H 1.09007 * 109.96093 * 217.98536 * 19 18 16 51 51 H 0.97000 * 120.00489 * 179.97438 * 24 23 21 52 52 H 1.07998 * 125.98288 * 179.74505 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0141 -2.0189 1.3919 7 6 2.5573 -2.2547 2.6388 8 6 2.7508 -3.5706 3.2746 9 8 2.0172 -4.4975 2.9892 10 7 3.7408 -3.7464 4.1720 11 6 4.7400 -2.6953 4.4598 12 6 6.1613 -3.2401 4.3341 13 6 6.3272 -4.5658 5.0974 14 6 5.3000 -5.5307 4.5528 15 1 5.3835 -5.5545 3.4662 16 6 3.8940 -4.9829 4.9280 17 1 3.8114 -4.7999 5.9994 18 6 3.0230 -6.1655 4.4842 19 6 3.8866 -7.3779 4.9327 20 7 5.2865 -6.8974 5.0375 21 6 6.3605 -7.6087 5.5024 22 1 7.3386 -7.1518 5.5322 23 6 6.1915 -8.9164 5.9361 24 7 4.9995 -9.4729 5.9001 25 14 7.6564 -9.8864 6.5708 26 1 8.8750 -9.0400 6.5091 27 1 7.4082 -10.2942 7.9770 28 1 7.8504 -11.0960 5.7315 29 6 2.8879 -0.9981 3.1941 30 7 2.5686 -0.0773 2.3271 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1393 39 1 3.1300 -0.7217 -1.2490 40 1 1.6517 -2.7656 0.7009 41 1 4.6082 -1.8739 3.7555 42 1 4.5880 -2.3251 5.4736 43 1 6.3876 -3.4049 3.2807 44 1 6.8603 -2.5079 4.7381 45 1 7.3298 -4.9625 4.9376 46 1 6.1580 -4.4043 6.1620 47 1 2.0627 -6.1582 4.9999 48 1 2.8838 -6.1638 3.4031 49 1 3.5441 -7.7406 5.9017 50 1 3.8210 -8.1756 4.1926 51 1 4.8815 -10.3869 6.2028 52 1 3.3296 -0.8299 4.1651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:18 Heat of formation + Delta-G solvation = 85.726301 kcal Electronic energy + Delta-G solvation = -31809.261186 eV Core-core repulsion = 27811.850439 eV Total energy + Delta-G solvation = -3997.410747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.18 seconds Orbital eigenvalues (eV) -41.69690 -39.96155 -37.61912 -36.96054 -35.33004 -32.51018 -32.21635 -31.01366 -30.33784 -28.71530 -28.11154 -27.94110 -27.78317 -24.88356 -24.42572 -23.17243 -21.95361 -21.29263 -20.61385 -19.84498 -19.47529 -18.75924 -17.14007 -16.52431 -15.92965 -15.75345 -15.43414 -15.02761 -14.92426 -14.59805 -14.48633 -14.17848 -13.95625 -13.84388 -13.55301 -13.33200 -12.94423 -12.79832 -12.75765 -12.71430 -12.61194 -12.35416 -12.25896 -12.13039 -11.76395 -11.70429 -11.64402 -11.46193 -11.07426 -10.97591 -10.81353 -10.60286 -10.43249 -10.33527 -10.02080 -9.89402 -9.75367 -9.63093 -9.54632 -8.95402 -8.69360 -8.49287 -8.08257 -6.75212 -5.64002 -2.97777 1.53121 2.07629 2.16644 3.26757 3.43759 3.48785 3.51393 3.58435 3.96656 4.24229 4.34762 4.54472 4.56180 4.60120 4.89516 4.95311 4.97639 5.02401 5.15741 5.18117 5.20831 5.27221 5.30291 5.36124 5.38279 5.44254 5.49536 5.53004 5.57546 5.66839 5.69254 5.77461 5.80066 5.87241 5.95865 6.09665 6.18257 6.29622 6.37417 6.40008 6.49831 6.66211 6.71901 6.81731 6.90573 7.00281 7.31270 7.44020 7.65947 7.74500 7.85591 7.93001 8.32003 8.61691 9.25955 9.89899 10.58887 11.48094 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024463 B = 0.002482 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.328696 B =11279.674408 C =11764.985437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.353 5.353 6 C 0.120 3.880 7 C -0.282 4.282 8 C 0.595 3.405 9 O -0.539 6.539 10 N -0.595 5.595 11 C 0.101 3.899 12 C -0.128 4.128 13 C -0.115 4.115 14 C 0.158 3.842 15 H 0.018 0.982 16 C 0.119 3.881 17 H 0.079 0.921 18 C -0.133 4.133 19 C 0.173 3.827 20 N -0.594 5.594 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.920 5.920 25 Si 0.909 3.091 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.072 3.928 30 N -0.296 5.296 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.181 0.819 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.055 0.945 50 H 0.038 0.962 51 H 0.251 0.749 52 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 23.409 -11.699 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 C -0.200 4.200 4 C -0.221 4.221 5 N -0.133 5.133 6 C -0.030 4.030 7 C -0.297 4.297 8 C 0.384 3.616 9 O -0.417 6.417 10 N -0.327 5.327 11 C -0.022 4.022 12 C -0.167 4.167 13 C -0.154 4.154 14 C 0.049 3.951 15 H 0.035 0.965 16 C 0.015 3.985 17 H 0.097 0.903 18 C -0.171 4.171 19 C 0.048 3.952 20 N -0.318 5.318 21 C -0.351 4.351 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.740 3.260 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.115 4.115 30 N -0.116 5.116 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.198 0.802 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.062 0.938 52 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.967 24.030 -12.153 27.815 hybrid contribution 0.863 -1.492 0.649 1.841 sum -6.105 22.538 -11.504 26.030 Atomic orbital electron populations 1.22286 0.92655 1.03455 1.03510 1.20833 0.94590 0.93888 0.81200 1.21909 1.02283 0.92686 1.03153 1.22287 1.02581 1.01270 0.95953 1.48767 1.46303 1.04154 1.14097 1.22776 0.96642 0.86373 0.97233 1.20387 1.16796 0.94626 0.97920 1.17220 0.79898 0.86126 0.78390 1.90757 1.46374 1.41916 1.62694 1.47744 1.27828 1.16591 1.40520 1.22044 0.88416 0.90546 1.01171 1.21896 0.95444 0.98038 1.01354 1.21428 1.00537 0.93879 0.99550 1.20767 0.92019 0.86207 0.96095 0.96500 1.22385 0.98988 0.82933 0.94225 0.90332 1.23029 0.97203 0.94033 1.02857 1.21733 0.81729 0.91625 1.00110 1.44105 1.05492 1.07411 1.74820 1.19034 0.87315 0.94069 1.34715 0.90361 1.24798 0.96781 0.97150 1.01786 1.69959 1.20238 1.13738 1.52790 0.86087 0.81633 0.80066 0.78234 1.20577 1.21841 1.21851 1.24247 0.98182 0.89703 0.99407 1.77102 1.18223 1.21980 0.94282 0.91455 0.90210 0.91530 0.91509 0.90879 0.90900 0.91305 0.89861 0.91280 0.80163 0.89397 0.91678 0.91945 0.91040 0.91615 0.91813 0.92307 0.89382 0.92684 0.94369 0.93839 0.79116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.72 37.16 0.32 -0.62 16 2 C 0.18 1.23 1.23 -131.82 -0.16 1.07 16 3 C -0.14 -0.89 8.07 37.16 0.30 -0.59 16 4 C -0.16 -0.89 8.28 37.16 0.31 -0.58 16 5 N -0.35 -3.57 3.41 -48.11 -0.16 -3.73 16 6 C 0.12 1.38 10.49 -16.56 -0.17 1.21 16 7 C -0.28 -3.77 5.61 -105.07 -0.59 -4.36 16 8 C 0.60 9.95 7.65 -12.52 -0.10 9.86 16 9 O -0.54 -10.76 13.74 5.28 0.07 -10.69 16 10 N -0.59 -9.62 2.91 -165.24 -0.48 -10.10 16 11 C 0.10 1.25 5.21 -3.44 -0.02 1.23 16 12 C -0.13 -1.69 5.93 -26.42 -0.16 -1.85 16 13 C -0.12 -2.01 5.45 -27.25 -0.15 -2.16 16 14 C 0.16 3.37 2.57 -68.36 -0.18 3.20 16 15 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 16 C 0.12 2.31 3.33 -66.80 -0.22 2.09 16 17 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 18 C -0.13 -2.89 5.12 -25.20 -0.13 -3.02 16 19 C 0.17 4.44 5.47 -1.70 -0.01 4.43 16 20 N -0.59 -15.46 3.35 -163.29 -0.55 -16.01 16 21 C -0.22 -6.23 9.94 -15.06 -0.15 -6.38 16 22 H 0.08 2.10 7.31 -52.49 -0.38 1.72 16 23 C -0.01 -0.25 5.49 -17.44 -0.10 -0.35 16 24 N -0.92 -27.60 10.46 55.49 0.58 -27.02 16 25 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 C 0.07 0.82 9.67 -16.98 -0.16 0.65 16 30 N -0.30 -3.41 11.56 30.86 0.36 -3.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.53 8.03 -51.93 -0.42 0.12 16 37 H 0.07 0.37 7.34 -51.93 -0.38 -0.01 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.18 1.78 7.53 -52.49 -0.40 1.39 16 41 H 0.09 0.93 4.32 -51.93 -0.22 0.71 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 46 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.09 2.01 6.02 -51.93 -0.31 1.70 16 49 H 0.05 1.54 7.19 -51.93 -0.37 1.16 16 50 H 0.04 1.08 7.81 -51.92 -0.41 0.67 16 51 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 52 H 0.19 1.74 6.38 -52.49 -0.34 1.40 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -34.11 396.36 -9.27 -43.38 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -8.68 Total: 0.09 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.36 Total: 3.83 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.26 Total: -59.91 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.11 -9.27 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.103 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.18 seconds