Wall clock time and date at job start Wed Apr 1 2020 04:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47259 * 2 1 4 4 C 1.53002 * 109.47153 * 240.00162 * 2 1 3 5 5 N 1.46498 * 109.47059 * 120.00101 * 2 1 3 6 6 C 1.34258 * 125.75358 * 75.00167 * 5 2 1 7 7 C 1.38041 * 107.41808 * 180.02562 * 6 5 2 8 8 C 1.47430 * 126.41648 * 179.97438 * 7 6 5 9 9 O 1.21606 * 120.00014 * 351.28072 * 8 7 6 10 10 N 1.34774 * 120.00290 * 171.27476 * 8 7 6 11 11 C 1.45728 * 117.76294 * 173.82198 * 10 8 7 12 12 C 1.53054 * 109.55855 * 140.82647 * 11 10 8 13 13 C 1.52941 * 108.49511 * 53.80169 * 12 11 10 14 14 C 1.52924 * 109.79069 * 294.01116 * 13 12 11 15 15 H 1.09003 * 110.51104 * 292.89774 * 14 13 12 16 16 C 1.44193 * 117.75836 * 353.55989 * 10 8 7 17 17 H 1.08999 * 109.23130 * 333.67417 * 16 10 8 18 18 C 1.54071 * 111.76473 * 93.82961 * 16 10 8 19 19 C 1.54048 * 103.74464 * 153.26078 * 18 16 10 20 20 N 1.46892 * 107.70957 * 342.86527 * 19 18 16 21 21 C 1.36934 * 125.58353 * 177.04475 * 20 19 18 22 22 H 1.07999 * 119.99362 * 179.97438 * 21 20 19 23 23 C 1.38808 * 120.00088 * 359.97438 * 21 20 19 24 24 N 1.31618 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99874 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47283 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47517 * 119.99913 * 25 23 21 28 28 H 1.48504 * 109.46936 * 240.00070 * 25 23 21 29 29 C 1.41293 * 107.17225 * 0.22640 * 7 6 5 30 30 N 1.30453 * 108.01680 * 359.61303 * 29 7 6 31 31 H 1.08998 * 109.46758 * 300.00046 * 1 2 3 32 32 H 1.09001 * 109.46695 * 59.99617 * 1 2 3 33 33 H 1.08997 * 109.47181 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47260 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47448 * 300.00378 * 3 2 1 36 36 H 1.09005 * 109.47040 * 59.99918 * 3 2 1 37 37 H 1.08997 * 109.47278 * 300.00186 * 4 2 1 38 38 H 1.09002 * 109.46767 * 60.00104 * 4 2 1 39 39 H 1.08994 * 109.47229 * 179.97438 * 4 2 1 40 40 H 1.07998 * 126.29299 * 359.97438 * 6 5 2 41 41 H 1.09007 * 109.45825 * 260.84991 * 11 10 8 42 42 H 1.08995 * 109.45815 * 20.80073 * 11 10 8 43 43 H 1.09001 * 109.63180 * 173.50493 * 12 11 10 44 44 H 1.09001 * 109.62962 * 293.89941 * 12 11 10 45 45 H 1.08997 * 109.41854 * 54.10556 * 13 12 11 46 46 H 1.09002 * 109.41559 * 173.91354 * 13 12 11 47 47 H 1.09004 * 110.57393 * 34.69125 * 18 16 10 48 48 H 1.09004 * 110.69498 * 271.88434 * 18 16 10 49 49 H 1.09003 * 109.81184 * 223.31923 * 19 18 16 50 50 H 1.08999 * 109.81548 * 102.41503 * 19 18 16 51 51 H 0.97001 * 119.99831 * 179.97438 * 24 23 21 52 52 H 1.07999 * 125.99285 * 179.73577 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 2.0140 -2.0189 1.3918 7 6 2.5561 -2.2545 2.6392 8 6 2.7492 -3.5705 3.2752 9 8 2.2759 -4.5677 2.7649 10 7 3.4503 -3.6684 4.4220 11 6 3.4955 -4.9673 5.0813 12 6 4.8975 -5.2063 5.6469 13 6 5.2710 -4.0189 6.5355 14 6 5.4032 -2.7560 5.6835 15 1 6.2575 -2.8365 5.0112 16 6 4.1092 -2.4822 4.9097 17 1 4.3266 -1.8215 4.0705 18 6 3.2344 -1.7180 5.9219 19 6 4.2572 -0.9741 6.8014 20 7 5.5671 -1.6060 6.5951 21 6 6.7469 -1.1959 7.1565 22 1 7.6610 -1.7296 6.9422 23 6 6.7678 -0.0944 8.0008 24 7 5.6538 0.5563 8.2615 25 14 8.3771 0.4646 8.7671 26 1 9.4754 -0.4288 8.3189 27 1 8.6686 1.8582 8.3453 28 1 8.2665 0.4081 10.2470 29 6 2.8861 -0.9981 3.1949 30 7 2.5675 -0.0771 2.3276 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2073 -2.1392 39 1 3.1300 -0.7208 -1.2495 40 1 1.6520 -2.7656 0.7007 41 1 2.7682 -4.9881 5.8929 42 1 3.2569 -5.7490 4.3601 43 1 4.9026 -6.1221 6.2380 44 1 5.6123 -5.2945 4.8288 45 1 4.4950 -3.8699 7.2863 46 1 6.2199 -4.2222 7.0319 47 1 2.6469 -2.4130 6.5219 48 1 2.5826 -1.0098 5.4102 49 1 3.9698 -1.0536 7.8499 50 1 4.3028 0.0748 6.5085 51 1 5.6684 1.3258 8.8518 52 1 3.3268 -0.8297 4.1664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:30 Heat of formation + Delta-G solvation = 101.269545 kcal Electronic energy + Delta-G solvation = -32424.562322 eV Core-core repulsion = 28427.825581 eV Total energy + Delta-G solvation = -3996.736741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.69757 -40.07900 -37.91831 -36.95696 -34.97771 -33.37137 -32.08412 -30.76902 -30.03823 -29.09768 -28.26641 -27.83253 -27.62317 -24.85676 -24.68114 -23.15457 -21.88900 -21.59847 -20.36881 -19.83413 -19.58732 -18.24555 -17.21706 -16.74191 -16.36868 -15.72833 -15.56424 -15.15006 -14.75777 -14.67790 -14.38900 -13.92220 -13.85096 -13.70139 -13.63027 -13.28353 -12.92673 -12.81911 -12.67571 -12.50588 -12.44418 -12.38413 -12.12540 -11.99626 -11.86089 -11.54285 -11.50432 -11.10480 -11.03514 -10.87772 -10.80176 -10.73558 -10.64063 -10.40019 -10.08982 -9.93967 -9.89702 -9.64441 -9.51322 -9.26763 -8.62654 -8.59918 -8.17346 -6.88149 -5.73223 -3.07608 1.61735 2.27439 2.34507 3.32837 3.39573 3.45766 3.47513 3.64630 4.11572 4.37884 4.46771 4.48573 4.68202 4.81128 4.98832 5.06425 5.12608 5.15539 5.25825 5.28485 5.33640 5.36107 5.36788 5.41754 5.46973 5.50840 5.51983 5.54238 5.61528 5.64782 5.72976 5.78532 5.80502 5.93084 5.98042 6.10591 6.19015 6.25767 6.28223 6.35941 6.44945 6.55977 6.60935 6.80197 6.89486 7.02609 7.04509 7.54873 7.55623 7.66248 7.74028 7.80534 8.22461 8.50925 9.19228 9.78875 10.42957 11.37800 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.003547 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.212974 B = 7891.515432 C = 9701.196395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 C -0.144 4.144 4 C -0.162 4.162 5 N -0.355 5.355 6 C 0.123 3.877 7 C -0.292 4.292 8 C 0.591 3.409 9 O -0.563 6.563 10 N -0.582 5.582 11 C 0.117 3.883 12 C -0.131 4.131 13 C -0.130 4.130 14 C 0.162 3.838 15 H 0.057 0.943 16 C 0.110 3.890 17 H 0.104 0.896 18 C -0.173 4.173 19 C 0.177 3.823 20 N -0.596 5.596 21 C -0.226 4.226 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.049 3.951 30 N -0.292 5.292 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.180 0.820 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.043 0.957 50 H 0.055 0.945 51 H 0.252 0.748 52 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 -3.815 -16.377 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.094 3.906 3 C -0.202 4.202 4 C -0.220 4.220 5 N -0.134 5.134 6 C -0.029 4.029 7 C -0.307 4.307 8 C 0.381 3.619 9 O -0.444 6.444 10 N -0.312 5.312 11 C -0.005 4.005 12 C -0.170 4.170 13 C -0.171 4.171 14 C 0.053 3.947 15 H 0.075 0.925 16 C 0.005 3.995 17 H 0.121 0.879 18 C -0.212 4.212 19 C 0.052 3.948 20 N -0.320 5.320 21 C -0.354 4.354 22 H 0.097 0.903 23 C -0.202 4.202 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.137 4.137 30 N -0.111 5.111 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.197 0.803 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.062 0.938 52 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.854 -2.781 -16.824 19.694 hybrid contribution 0.806 -0.543 0.822 1.272 sum -9.048 -3.324 -16.002 18.681 Atomic orbital electron populations 1.22277 0.92774 1.03226 1.03551 1.20814 0.94505 0.94030 0.81259 1.21918 1.02463 0.92607 1.03184 1.22277 1.02611 1.01065 0.96036 1.48907 1.46064 1.04139 1.14324 1.22727 0.96696 0.86507 0.96949 1.20251 1.18173 0.94379 0.97881 1.17395 0.77609 0.87076 0.79819 1.90695 1.51669 1.37954 1.64080 1.46775 1.50290 1.10329 1.23785 1.21300 0.97493 0.84726 0.97017 1.21845 0.96056 0.99203 0.99885 1.22113 1.01862 0.94619 0.98476 1.20899 0.93496 0.88822 0.91454 0.92512 1.21892 0.93860 0.85702 0.98044 0.87874 1.23401 0.99457 0.99737 0.98627 1.21097 0.82080 0.95215 0.96383 1.44514 1.04804 1.29959 1.52735 1.19052 0.85327 1.09365 1.21686 0.90329 1.24777 0.97197 0.98122 1.00083 1.69958 1.24634 1.21871 1.40235 0.86065 0.82662 0.78322 0.78815 1.20529 1.21769 1.21823 1.25996 0.97264 0.89626 1.00810 1.77281 1.17833 1.22037 0.93943 0.91359 0.90293 0.91724 0.91395 0.90972 0.90702 0.91475 0.89962 0.91282 0.80272 0.92312 0.89421 0.91266 0.91829 0.91963 0.91909 0.91438 0.90840 0.93895 0.92698 0.93762 0.75587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.72 37.16 0.32 -0.84 16 2 C 0.18 1.56 1.23 -131.82 -0.16 1.40 16 3 C -0.14 -1.25 8.07 37.16 0.30 -0.95 16 4 C -0.16 -1.09 8.28 37.16 0.31 -0.78 16 5 N -0.35 -4.43 3.41 -48.11 -0.16 -4.59 16 6 C 0.12 1.60 10.40 -16.56 -0.17 1.43 16 7 C -0.29 -4.54 5.85 -105.07 -0.61 -5.16 16 8 C 0.59 10.02 7.57 -12.52 -0.09 9.92 16 9 O -0.56 -10.51 16.11 5.27 0.08 -10.43 16 10 N -0.58 -9.49 2.80 -168.83 -0.47 -9.97 16 11 C 0.12 1.74 6.30 -4.43 -0.03 1.71 16 12 C -0.13 -1.87 6.10 -26.73 -0.16 -2.04 16 13 C -0.13 -2.29 5.31 -26.80 -0.14 -2.44 16 14 C 0.16 3.15 3.29 -67.21 -0.22 2.93 16 15 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 16 C 0.11 1.91 2.19 -68.48 -0.15 1.76 16 17 H 0.10 1.82 4.29 -51.93 -0.22 1.60 16 18 C -0.17 -3.11 5.55 -25.62 -0.14 -3.26 16 19 C 0.18 4.04 5.39 -3.28 -0.02 4.03 16 20 N -0.60 -14.15 2.94 -163.74 -0.48 -14.63 16 21 C -0.23 -5.99 10.27 -15.06 -0.15 -6.14 16 22 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 24 N -0.92 -26.03 10.29 55.49 0.57 -25.46 16 25 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 C 0.05 0.78 8.75 -16.98 -0.15 0.64 16 30 N -0.29 -4.51 11.56 30.86 0.36 -4.16 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 37 H 0.07 0.42 7.34 -51.93 -0.38 0.04 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.18 1.90 7.53 -52.49 -0.40 1.51 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.30 6.89 -51.93 -0.36 0.95 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.07 1.23 5.65 -51.93 -0.29 0.94 16 49 H 0.04 1.10 7.60 -51.93 -0.39 0.70 16 50 H 0.05 1.39 7.25 -51.93 -0.38 1.01 16 51 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 52 H 0.23 3.81 2.78 -52.49 -0.15 3.66 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -31.17 394.11 -9.01 -40.17 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.44 Total: 4.57 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.38 Total: 1.97 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.19 Total: -58.81 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.17 -9.01 -40.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.443 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds