Wall clock time and date at job start Wed Apr 1 2020 04:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47083 * 2 1 4 4 C 1.53000 * 109.47439 * 119.99605 * 2 1 3 5 5 N 1.46495 * 109.47136 * 240.00120 * 2 1 3 6 6 C 1.34267 * 125.75456 * 74.71391 * 5 2 1 7 7 C 1.38042 * 107.41613 * 179.90105 * 6 5 2 8 8 C 1.47431 * 126.41443 * 180.09792 * 7 6 5 9 9 O 1.21602 * 119.99490 * 27.08131 * 8 7 6 10 10 N 1.34773 * 120.00155 * 207.07889 * 8 7 6 11 11 C 1.47859 * 122.23044 * 5.81812 * 10 8 7 12 12 C 1.53141 * 110.81587 * 127.48616 * 11 10 8 13 13 C 1.53869 * 111.46709 * 48.78469 * 12 11 10 14 14 C 1.51078 * 107.34371 * 302.92300 * 13 12 11 15 15 H 1.08996 * 108.74460 * 308.52756 * 14 13 12 16 16 C 1.45720 * 122.23202 * 186.11243 * 10 8 7 17 17 H 1.09000 * 111.06830 * 119.45534 * 16 10 8 18 18 C 1.53436 * 116.37770 * 350.09560 * 16 10 8 19 19 C 1.55476 * 101.67075 * 207.26416 * 18 16 10 20 20 N 1.45031 * 119.18520 * 183.87248 * 14 13 12 21 21 C 1.36936 * 126.56089 * 28.77891 * 20 14 13 22 22 H 1.08003 * 119.99516 * 0.02562 * 21 20 14 23 23 C 1.38807 * 119.99893 * 179.97438 * 21 20 14 24 24 N 1.31619 * 120.00300 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99702 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47431 * 60.00080 * 25 23 21 27 27 H 1.48501 * 109.46930 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47221 * 299.99991 * 25 23 21 29 29 C 1.41290 * 107.17103 * 0.36243 * 7 6 5 30 30 N 1.30444 * 108.02412 * 359.77131 * 29 7 6 31 31 H 1.09000 * 109.47188 * 59.99765 * 1 2 3 32 32 H 1.09005 * 109.46978 * 300.00128 * 1 2 3 33 33 H 1.09002 * 109.47185 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46815 * 59.99597 * 3 2 1 35 35 H 1.08992 * 109.47117 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46606 * 300.00297 * 3 2 1 37 37 H 1.09009 * 109.46561 * 60.00260 * 4 2 1 38 38 H 1.09002 * 109.47245 * 179.97438 * 4 2 1 39 39 H 1.08996 * 109.47343 * 300.00332 * 4 2 1 40 40 H 1.08001 * 126.28988 * 0.02562 * 6 5 2 41 41 H 1.08999 * 109.16377 * 247.95163 * 11 10 8 42 42 H 1.09003 * 109.15470 * 7.14011 * 11 10 8 43 43 H 1.08996 * 109.21498 * 288.19614 * 12 11 10 44 44 H 1.09005 * 108.92765 * 169.18060 * 12 11 10 45 45 H 1.09010 * 109.88111 * 183.46644 * 13 12 11 46 46 H 1.08999 * 109.88603 * 62.38998 * 13 12 11 47 47 H 1.09007 * 110.98217 * 325.35513 * 18 16 10 48 48 H 1.09001 * 110.98784 * 89.16296 * 18 16 10 49 49 H 1.09005 * 109.95491 * 263.21635 * 19 18 16 50 50 H 1.08996 * 109.96341 * 141.98349 * 19 18 16 51 51 H 0.97000 * 119.99794 * 179.97438 * 24 23 21 52 52 H 1.08001 * 125.99079 * 179.80469 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 2.0183 -0.6906 -1.1961 6 6 2.0090 -0.1980 -2.4452 7 6 2.5558 -1.1585 -3.2722 8 6 2.7482 -1.0516 -4.7300 9 8 2.8921 0.0402 -5.2457 10 7 2.7647 -2.1638 -5.4909 11 6 2.4701 -3.5027 -4.9370 12 6 1.3821 -4.2031 -5.7560 13 6 1.6837 -4.1402 -7.2635 14 6 1.8196 -2.6822 -7.6352 15 1 0.9457 -2.1442 -7.2678 16 6 3.0802 -2.1279 -6.9131 17 1 3.9618 -2.7294 -7.1342 18 6 3.1640 -0.7381 -7.5579 19 6 2.7914 -1.0532 -9.0340 20 7 2.0234 -2.3228 -9.0254 21 6 1.5903 -3.0215 -10.1205 22 1 1.0361 -3.9394 -9.9908 23 6 1.8626 -2.5496 -11.3972 24 7 2.5375 -1.4307 -11.5552 25 14 1.2711 -3.5025 -12.8911 26 1 -0.2096 -3.6086 -12.8561 27 1 1.6880 -2.7933 -14.1274 28 1 1.8654 -4.8633 -12.8773 29 6 2.8908 -2.2657 -2.4609 30 7 2.5676 -1.9771 -1.2306 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6767 -1.7489 1.2492 38 1 3.1301 -0.7215 1.2490 39 1 1.6767 -0.2073 2.1392 40 1 1.6430 0.7723 -2.7470 41 1 3.3785 -4.1048 -4.9542 42 1 2.1316 -3.3968 -3.9063 43 1 0.4231 -3.7218 -5.5643 44 1 1.3243 -5.2470 -5.4476 45 1 0.8650 -4.5911 -7.8246 46 1 2.6144 -4.6657 -7.4776 47 1 2.4414 -0.0558 -7.1100 48 1 4.1745 -0.3354 -7.4876 49 1 3.6970 -1.1701 -9.6295 50 1 2.1782 -0.2500 -9.4427 51 1 2.7281 -1.1011 -12.4474 52 1 3.3368 -3.1891 -2.8000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567090.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:51 Heat of formation + Delta-G solvation = 87.102813 kcal Electronic energy + Delta-G solvation = -31810.506006 eV Core-core repulsion = 27813.154950 eV Total energy + Delta-G solvation = -3997.351057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.69933 -39.95640 -37.61398 -36.96127 -35.31987 -32.49785 -32.21696 -31.01499 -30.33785 -28.70950 -28.09905 -27.94055 -27.78338 -24.88472 -24.42521 -23.18665 -21.94814 -21.28784 -20.61414 -19.84268 -19.47407 -18.76515 -17.13402 -16.51962 -15.95050 -15.76171 -15.38535 -15.01586 -14.95150 -14.60811 -14.47164 -14.18557 -14.03943 -13.76568 -13.53910 -13.27737 -12.97696 -12.83760 -12.74059 -12.68908 -12.61896 -12.35114 -12.25808 -12.11746 -11.76391 -11.70113 -11.64240 -11.45403 -11.07515 -10.97122 -10.78192 -10.59952 -10.43587 -10.34005 -10.05889 -9.89401 -9.75468 -9.62976 -9.53723 -8.94640 -8.69394 -8.48509 -8.07840 -6.74935 -5.63353 -2.97219 1.52869 2.07802 2.16064 3.27265 3.44666 3.48810 3.50240 3.59215 3.96719 4.24220 4.34781 4.54851 4.56302 4.60095 4.89140 4.95345 4.97946 5.02331 5.15847 5.17946 5.20821 5.26997 5.30300 5.35936 5.38530 5.44218 5.49541 5.52725 5.57274 5.66853 5.69464 5.77431 5.80043 5.87326 5.96149 6.09804 6.18373 6.29527 6.37684 6.40161 6.49999 6.66353 6.71867 6.81931 6.90808 7.00595 7.31614 7.43886 7.65544 7.74797 7.85735 7.93141 8.32627 8.61973 9.26414 9.90343 10.59454 11.48613 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.002482 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.553368 B =11277.769926 C =11768.332701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 C -0.163 4.163 4 C -0.143 4.143 5 N -0.353 5.353 6 C 0.121 3.879 7 C -0.282 4.282 8 C 0.595 3.405 9 O -0.539 6.539 10 N -0.595 5.595 11 C 0.099 3.901 12 C -0.128 4.128 13 C -0.115 4.115 14 C 0.158 3.842 15 H 0.018 0.982 16 C 0.119 3.881 17 H 0.079 0.921 18 C -0.133 4.133 19 C 0.173 3.827 20 N -0.593 5.593 21 C -0.225 4.225 22 H 0.077 0.923 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.910 3.090 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.070 3.930 30 N -0.296 5.296 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.181 0.819 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.058 0.942 49 H 0.055 0.945 50 H 0.038 0.962 51 H 0.252 0.748 52 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 0.597 26.887 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 C -0.221 4.221 4 C -0.200 4.200 5 N -0.133 5.133 6 C -0.030 4.030 7 C -0.297 4.297 8 C 0.384 3.616 9 O -0.418 6.418 10 N -0.327 5.327 11 C -0.024 4.024 12 C -0.167 4.167 13 C -0.154 4.154 14 C 0.049 3.951 15 H 0.035 0.965 16 C 0.015 3.985 17 H 0.097 0.903 18 C -0.171 4.171 19 C 0.048 3.952 20 N -0.318 5.318 21 C -0.353 4.353 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.740 3.260 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.117 4.117 30 N -0.116 5.116 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.198 0.802 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.063 0.937 52 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.516 0.879 27.711 27.766 hybrid contribution -0.292 -0.331 -1.794 1.848 sum -1.807 0.548 25.917 25.985 Atomic orbital electron populations 1.22286 0.92646 1.03554 1.03432 1.20834 0.94583 0.92016 0.83089 1.22285 1.02587 0.93393 1.03807 1.21909 1.02266 1.01355 0.94497 1.48772 1.46314 1.12058 1.06175 1.22781 0.97135 0.99107 0.83966 1.20391 1.17220 0.96986 0.95126 1.17219 0.76310 0.83682 0.84433 1.90756 1.50780 1.26725 1.73505 1.47741 1.68635 1.06497 1.09810 1.22182 0.98645 0.83349 0.98197 1.21966 0.98611 0.99956 0.96159 1.21430 1.02011 0.98349 0.93607 1.20769 0.94422 0.93142 0.86759 0.96504 1.22384 0.98722 0.99810 0.77614 0.90337 1.23037 1.02045 0.94750 0.97316 1.21735 0.96008 0.87513 0.89914 1.44089 1.64336 1.24371 0.99009 1.18940 1.28870 1.03854 0.83621 0.90478 1.24796 1.00699 0.97633 0.97322 1.69943 1.44207 1.21534 1.21084 0.86238 0.78264 0.78948 0.82530 1.21276 1.21669 1.21236 1.24283 0.98703 0.98827 0.89843 1.77105 1.18197 0.95471 1.20804 0.91561 0.90201 0.91423 0.89875 0.91293 0.91283 0.90879 0.91542 0.90875 0.80151 0.91620 0.89283 0.91917 0.91082 0.91614 0.91815 0.89356 0.92316 0.92699 0.94370 0.93737 0.79019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.71 37.16 0.32 -0.61 16 2 C 0.18 1.23 1.23 -131.82 -0.16 1.07 16 3 C -0.16 -0.90 8.29 37.16 0.31 -0.59 16 4 C -0.14 -0.89 8.07 37.16 0.30 -0.59 16 5 N -0.35 -3.57 3.41 -48.11 -0.16 -3.74 16 6 C 0.12 1.39 10.49 -16.56 -0.17 1.21 16 7 C -0.28 -3.78 5.65 -105.07 -0.59 -4.37 16 8 C 0.59 9.96 7.66 -12.52 -0.10 9.87 16 9 O -0.54 -10.77 13.72 5.28 0.07 -10.70 16 10 N -0.59 -9.63 2.91 -164.99 -0.48 -10.11 16 11 C 0.10 1.22 5.24 -3.22 -0.02 1.21 16 12 C -0.13 -1.69 5.94 -26.21 -0.16 -1.84 16 13 C -0.12 -2.01 5.45 -27.25 -0.15 -2.16 16 14 C 0.16 3.38 2.57 -68.36 -0.18 3.20 16 15 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 16 C 0.12 2.32 3.32 -66.80 -0.22 2.10 16 17 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 18 C -0.13 -2.90 5.12 -25.19 -0.13 -3.03 16 19 C 0.17 4.45 5.47 -1.69 -0.01 4.44 16 20 N -0.59 -15.48 3.35 -163.28 -0.55 -16.02 16 21 C -0.22 -6.28 9.94 -15.06 -0.15 -6.43 16 22 H 0.08 2.06 7.31 -52.48 -0.38 1.68 16 23 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 24 N -0.92 -27.63 10.46 55.49 0.58 -27.04 16 25 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 C 0.07 0.80 9.68 -16.98 -0.16 0.64 16 30 N -0.30 -3.41 11.56 30.86 0.36 -3.05 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.38 7.35 -51.93 -0.38 0.00 16 37 H 0.07 0.53 8.03 -51.92 -0.42 0.12 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.18 1.79 7.54 -52.49 -0.40 1.39 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.94 4.19 -51.93 -0.22 0.72 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.20 7.70 -51.92 -0.40 0.80 16 46 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 47 H 0.09 2.02 6.01 -51.93 -0.31 1.71 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.05 1.53 7.19 -51.93 -0.37 1.16 16 50 H 0.04 1.08 7.81 -51.93 -0.41 0.67 16 51 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 52 H 0.19 1.75 6.25 -52.49 -0.33 1.42 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -34.10 396.18 -9.26 -43.36 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.66 Total: 0.22 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -1.36 Total: 3.78 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.25 Total: -59.97 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.10 -9.26 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567090.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.465 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds