Wall clock time and date at job start Wed Apr 1 2020 04:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47114 * 2 1 4 4 C 1.53001 * 109.47337 * 119.99947 * 2 1 3 5 5 N 1.46503 * 109.47010 * 175.00431 * 4 2 1 6 6 C 1.34251 * 125.75537 * 125.00650 * 5 4 2 7 7 C 1.38045 * 107.41783 * 180.02562 * 6 5 4 8 8 C 1.47430 * 126.41445 * 179.97438 * 7 6 5 9 9 O 1.21604 * 120.00347 * 27.95660 * 8 7 6 10 10 N 1.34781 * 120.00056 * 207.95708 * 8 7 6 11 11 C 1.45729 * 117.76099 * 174.27394 * 10 8 7 12 12 C 1.53043 * 109.56142 * 218.89457 * 11 10 8 13 13 C 1.52949 * 108.49417 * 306.20310 * 12 11 10 14 14 C 1.52335 * 109.87300 * 65.93230 * 13 12 11 15 15 H 1.09006 * 110.92412 * 66.63306 * 14 13 12 16 16 C 1.44192 * 117.75724 * 354.25949 * 10 8 7 17 17 H 1.09003 * 109.22679 * 27.36538 * 16 10 8 18 18 C 1.54058 * 111.76754 * 266.45874 * 16 10 8 19 19 C 1.54057 * 103.74549 * 206.74084 * 18 16 10 20 20 N 1.46883 * 107.70316 * 17.13859 * 19 18 16 21 21 C 1.36940 * 125.57994 * 182.97176 * 20 19 18 22 22 H 1.07996 * 119.99926 * 180.02562 * 21 20 19 23 23 C 1.38816 * 119.99625 * 0.02562 * 21 20 19 24 24 N 1.31615 * 120.00435 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99684 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.47159 * 300.00243 * 25 23 21 28 28 H 1.48509 * 109.46895 * 59.99880 * 25 23 21 29 29 C 1.41289 * 107.17017 * 0.22159 * 7 6 5 30 30 N 1.30446 * 108.01991 * 359.61726 * 29 7 6 31 31 H 1.08996 * 109.47261 * 299.99768 * 1 2 3 32 32 H 1.08999 * 109.47254 * 59.99995 * 1 2 3 33 33 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47430 * 240.00677 * 2 1 3 35 35 H 1.09010 * 109.46686 * 60.00037 * 3 2 1 36 36 H 1.09001 * 109.47440 * 180.02562 * 3 2 1 37 37 H 1.08999 * 109.47494 * 300.00442 * 3 2 1 38 38 H 1.08998 * 109.46832 * 55.00265 * 4 2 1 39 39 H 1.09003 * 109.47146 * 294.99996 * 4 2 1 40 40 H 1.08001 * 126.29213 * 359.97438 * 6 5 4 41 41 H 1.08998 * 109.45905 * 338.93231 * 11 10 8 42 42 H 1.09005 * 109.45195 * 98.88539 * 11 10 8 43 43 H 1.09000 * 109.63295 * 65.90257 * 12 11 10 44 44 H 1.08996 * 109.63577 * 186.29888 * 12 11 10 45 45 H 1.09004 * 109.41758 * 186.08993 * 13 12 11 46 46 H 1.09000 * 109.41618 * 305.95422 * 13 12 11 47 47 H 1.09008 * 110.57222 * 88.17587 * 18 16 10 48 48 H 1.09003 * 110.70252 * 325.37086 * 18 16 10 49 49 H 1.08997 * 109.81323 * 257.58473 * 19 18 16 50 50 H 1.08999 * 109.80991 * 136.68259 * 19 18 16 51 51 H 0.97001 * 120.00229 * 179.97438 * 24 23 21 52 52 H 1.08006 * 125.98733 * 179.73895 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.3560 -0.3963 2.1313 7 6 5.6324 -0.6835 1.6910 8 6 6.8902 -0.3894 2.4016 9 8 6.9031 -0.3311 3.6162 10 7 8.0259 -0.1851 1.7051 11 6 9.2115 0.2269 2.4456 12 6 9.9882 1.2652 1.6328 13 6 10.2639 0.6869 0.2439 14 6 8.9531 0.5027 -0.5099 15 1 8.4919 1.4656 -0.7300 16 6 7.9846 -0.3895 0.2783 17 1 6.9709 -0.2114 -0.0806 18 6 8.4139 -1.8180 -0.1068 19 6 8.9656 -1.6614 -1.5367 20 7 9.2351 -0.2346 -1.7577 21 6 9.6806 0.3203 -2.9278 22 1 9.8500 1.3850 -2.9903 23 6 9.9142 -0.4860 -4.0334 24 7 9.7072 -1.7835 -3.9573 25 14 10.5225 0.2708 -5.6293 26 1 10.6933 -0.7951 -6.6490 27 1 9.5329 1.2663 -6.1138 28 1 11.8257 0.9428 -5.3933 29 6 5.5080 -1.3068 0.4291 30 7 4.2378 -1.3912 0.1442 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 1.6766 1.9564 0.8901 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9565 -0.8899 38 1 1.6055 -1.7198 1.2951 39 1 1.7517 -0.1583 2.1370 40 1 4.0941 0.0864 3.0612 41 1 8.9113 0.6622 3.3987 42 1 9.8460 -0.6408 2.6267 43 1 9.3955 2.1753 1.5394 44 1 10.9302 1.4914 2.1322 45 1 10.9086 1.3685 -0.3110 46 1 10.7595 -0.2786 0.3454 47 1 7.5564 -2.4910 -0.0987 48 1 9.1909 -2.1814 0.5658 49 1 8.2283 -2.0142 -2.2578 50 1 9.8883 -2.2322 -1.6412 51 1 9.8702 -2.3468 -4.7300 52 1 6.3218 -1.6544 -0.1900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049810689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:18 Heat of formation + Delta-G solvation = 84.406286 kcal Electronic energy + Delta-G solvation = -32193.457484 eV Core-core repulsion = 28195.989498 eV Total energy + Delta-G solvation = -3997.467987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.60404 -39.99791 -37.90082 -36.70325 -34.98987 -33.46930 -32.08414 -31.89850 -30.23857 -29.05503 -28.37135 -27.49986 -26.77794 -24.81333 -24.38440 -22.46077 -21.92829 -21.44974 -20.33055 -20.24517 -19.70582 -18.30022 -17.36159 -16.81438 -16.44259 -15.92223 -15.66158 -15.15904 -14.83784 -14.72368 -14.60188 -14.08923 -13.77926 -13.70379 -13.62265 -13.33761 -13.20783 -12.92274 -12.68782 -12.53009 -12.42079 -12.33161 -12.01918 -11.91168 -11.53131 -11.34864 -11.22501 -11.19265 -11.03530 -10.89140 -10.78216 -10.75315 -10.63719 -10.42012 -10.14062 -9.97804 -9.90110 -9.63844 -9.54506 -9.30608 -8.61283 -8.58425 -8.19991 -6.88292 -5.72801 -3.07263 1.61774 2.31937 2.33723 3.27427 3.40139 3.44886 3.45707 3.55423 4.15856 4.44560 4.46960 4.60348 4.72074 4.78006 4.92340 4.99668 5.11939 5.16694 5.24650 5.28782 5.30661 5.35034 5.38029 5.45965 5.52171 5.52719 5.54259 5.59231 5.64435 5.71542 5.76278 5.77736 5.92190 5.96361 6.00310 6.10198 6.18628 6.24240 6.27822 6.34403 6.42673 6.55733 6.59468 6.79385 6.82713 7.01127 7.04981 7.54325 7.56083 7.62040 7.71288 7.80189 8.22967 8.48292 9.19482 9.79196 10.43471 11.38099 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009603 B = 0.003689 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.910204 B = 7587.392638 C = 9561.381919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.148 4.148 4 C 0.135 3.865 5 N -0.361 5.361 6 C 0.117 3.883 7 C -0.289 4.289 8 C 0.590 3.410 9 O -0.560 6.560 10 N -0.581 5.581 11 C 0.119 3.881 12 C -0.131 4.131 13 C -0.130 4.130 14 C 0.162 3.838 15 H 0.055 0.945 16 C 0.113 3.887 17 H 0.102 0.898 18 C -0.166 4.166 19 C 0.179 3.821 20 N -0.595 5.595 21 C -0.228 4.228 22 H 0.077 0.923 23 C -0.004 4.004 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.286 1.286 29 C 0.064 3.936 30 N -0.292 5.292 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.182 0.818 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.055 0.945 50 H 0.042 0.958 51 H 0.253 0.747 52 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 3.553 12.281 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.014 3.986 5 N -0.139 5.139 6 C -0.034 4.034 7 C -0.304 4.304 8 C 0.379 3.621 9 O -0.440 6.440 10 N -0.311 5.311 11 C -0.003 4.003 12 C -0.170 4.170 13 C -0.170 4.170 14 C 0.054 3.946 15 H 0.073 0.927 16 C 0.007 3.993 17 H 0.119 0.881 18 C -0.205 4.205 19 C 0.054 3.946 20 N -0.320 5.320 21 C -0.356 4.356 22 H 0.095 0.905 23 C -0.201 4.201 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.212 1.212 29 C -0.123 4.123 30 N -0.111 5.111 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.199 0.801 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.060 0.940 51 H 0.063 0.937 52 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -14.940 3.108 11.780 19.278 hybrid contribution 1.070 0.550 -0.361 1.256 sum -13.871 3.658 11.420 18.335 Atomic orbital electron populations 1.21782 0.93904 1.02174 1.02407 1.21436 0.96132 0.97061 0.98322 1.21836 1.01671 0.95119 1.01925 1.21934 0.74266 1.02315 1.00086 1.48578 1.06719 1.44323 1.14317 1.22809 0.88972 0.96969 0.94627 1.20240 0.93474 1.17354 0.99361 1.17417 0.82612 0.75895 0.86143 1.90711 1.86301 1.53534 1.13437 1.46835 1.09895 1.66869 1.07506 1.21282 0.86050 0.97765 0.95220 1.21849 0.99736 0.98167 0.97231 1.21995 0.99993 1.01149 0.93892 1.20820 0.92291 0.94406 0.87105 0.92739 1.21825 1.01935 0.96571 0.78922 0.88065 1.23278 1.00615 0.95583 1.01037 1.21082 0.99234 0.85644 0.88683 1.44478 1.78019 1.02467 1.07012 1.18956 1.37368 0.92287 0.86991 0.90473 1.24772 1.01639 0.95616 0.98064 1.69933 1.54301 1.02871 1.29622 0.86221 0.78640 0.77803 0.83199 1.21627 1.21179 1.21223 1.25327 0.94976 0.96927 0.95022 1.77248 1.04438 1.19813 1.09646 0.92460 0.91832 0.92279 0.89201 0.92745 0.92436 0.92134 0.89435 0.88581 0.80123 0.89687 0.92252 0.91875 0.91174 0.91881 0.91934 0.91458 0.91514 0.92718 0.93971 0.93653 0.77069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.11 -0.91 3.00 -90.62 -0.27 -1.18 16 3 C -0.15 -1.31 9.08 37.16 0.34 -0.97 16 4 C 0.13 1.08 5.88 -4.04 -0.02 1.06 16 5 N -0.36 -4.30 3.10 -60.81 -0.19 -4.48 16 6 C 0.12 1.46 11.35 -16.56 -0.19 1.27 16 7 C -0.29 -4.38 5.62 -105.07 -0.59 -4.97 16 8 C 0.59 9.84 7.53 -12.52 -0.09 9.74 16 9 O -0.56 -10.39 16.28 5.27 0.09 -10.30 16 10 N -0.58 -9.37 2.80 -168.70 -0.47 -9.84 16 11 C 0.12 1.75 6.21 -4.43 -0.03 1.72 16 12 C -0.13 -1.85 6.10 -26.74 -0.16 -2.01 16 13 C -0.13 -2.28 5.30 -27.10 -0.14 -2.42 16 14 C 0.16 3.16 3.25 -67.39 -0.22 2.94 16 15 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 16 C 0.11 1.94 2.23 -68.36 -0.15 1.79 16 17 H 0.10 1.78 4.22 -51.93 -0.22 1.56 16 18 C -0.17 -2.99 5.79 -25.63 -0.15 -3.13 16 19 C 0.18 4.08 5.39 -3.28 -0.02 4.06 16 20 N -0.60 -14.17 2.95 -163.95 -0.48 -14.65 16 21 C -0.23 -6.04 10.27 -15.06 -0.15 -6.20 16 22 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 23 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 24 N -0.92 -26.06 10.29 55.49 0.57 -25.48 16 25 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 C 0.06 1.00 9.33 -16.98 -0.16 0.84 16 30 N -0.29 -4.39 12.24 30.86 0.38 -4.02 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.94 8.04 -51.93 -0.42 0.53 16 35 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.52 8.06 -51.93 -0.42 0.11 16 40 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.08 1.24 7.04 -51.93 -0.37 0.87 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.17 8.01 -51.93 -0.42 0.76 16 47 H 0.07 1.11 5.91 -51.92 -0.31 0.80 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.05 1.38 7.25 -51.93 -0.38 1.01 16 50 H 0.04 1.08 7.60 -51.93 -0.39 0.68 16 51 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 52 H 0.21 3.44 3.14 -52.48 -0.16 3.27 16 LS Contribution 398.48 15.07 6.00 6.00 Total: -1.00 -31.25 398.48 -9.42 -40.67 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.52 Total: 3.71 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.77 Total: 1.82 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.19 Total: -58.48 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.25 -9.42 -40.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049810689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.079 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds