Wall clock time and date at job start Wed Apr 1 2020 04:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47521 * 2 1 4 4 C 1.52999 * 109.47421 * 120.00650 * 2 1 3 5 5 N 1.46501 * 109.47489 * 66.06816 * 4 2 1 6 6 C 1.35031 * 124.88715 * 116.41444 * 5 4 2 7 7 C 1.35359 * 107.23138 * 179.72871 * 6 5 4 8 8 C 1.41501 * 105.50136 * 0.41299 * 7 6 5 9 9 C 1.47716 * 126.51995 * 179.84470 * 8 7 6 10 10 O 1.21569 * 119.99633 * 7.00452 * 9 8 7 11 11 N 1.34774 * 120.00073 * 187.00112 * 9 8 7 12 12 C 1.46793 * 119.52447 * 176.61969 * 11 9 8 13 13 C 1.53471 * 107.54193 * 232.26222 * 12 11 9 14 14 C 1.52731 * 108.39299 * 301.73192 * 13 12 11 15 15 C 1.52962 * 110.87815 * 63.84606 * 14 13 12 16 16 H 1.08997 * 111.92395 * 70.37732 * 15 14 13 17 17 C 1.55029 * 107.08442 * 194.29785 * 15 14 13 18 18 N 1.47102 * 107.12989 * 92.69498 * 17 15 14 19 19 C 1.36927 * 125.64860 * 180.19618 * 18 17 15 20 20 H 1.07999 * 120.00325 * 2.97981 * 19 18 17 21 21 C 1.38811 * 120.00350 * 182.98758 * 19 18 17 22 22 N 1.31626 * 119.99920 * 4.68450 * 21 19 18 23 23 Si 1.86799 * 120.00450 * 184.68620 * 21 19 18 24 24 H 1.48498 * 109.47002 * 84.99649 * 23 21 19 25 25 H 1.48501 * 109.47394 * 204.99626 * 23 21 19 26 26 H 1.48501 * 109.47137 * 324.99609 * 23 21 19 27 27 C 1.47682 * 108.70281 * 0.16128 * 18 17 15 28 28 C 1.45022 * 119.52166 * 356.88763 * 11 9 8 29 29 H 1.08998 * 109.87058 * 12.28413 * 28 11 9 30 30 N 1.28468 * 124.88205 * 296.41952 * 5 4 2 31 31 H 1.09004 * 109.46637 * 304.13624 * 1 2 3 32 32 H 1.08997 * 109.47006 * 64.13181 * 1 2 3 33 33 H 1.08993 * 109.47201 * 184.14261 * 1 2 3 34 34 H 1.09009 * 109.46649 * 240.00181 * 2 1 3 35 35 H 1.09004 * 109.47588 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47212 * 300.00080 * 3 2 1 37 37 H 1.09001 * 109.47286 * 60.00240 * 3 2 1 38 38 H 1.08999 * 109.46753 * 306.06964 * 4 2 1 39 39 H 1.09002 * 109.46903 * 186.07143 * 4 2 1 40 40 H 1.07999 * 126.38128 * 0.02562 * 6 5 4 41 41 H 1.07994 * 127.25491 * 180.25881 * 7 6 5 42 42 H 1.09001 * 109.84045 * 351.76486 * 12 11 9 43 43 H 1.08997 * 109.84743 * 112.74662 * 12 11 9 44 44 H 1.09002 * 109.68097 * 182.00872 * 13 12 11 45 45 H 1.09002 * 109.71109 * 61.47650 * 13 12 11 46 46 H 1.09000 * 109.19900 * 303.48072 * 14 13 12 47 47 H 1.09004 * 109.19539 * 184.19881 * 14 13 12 48 48 H 1.09004 * 109.90338 * 212.06914 * 17 15 14 49 49 H 1.09002 * 109.90233 * 333.14016 * 17 15 14 50 50 H 0.96992 * 120.00329 * 180.02562 * 22 21 19 51 51 H 1.09000 * 110.44819 * 264.74799 * 27 18 17 52 52 H 1.09001 * 110.44947 * 142.20569 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.6747 -2.1383 1.1783 6 6 2.5546 -3.1605 1.1131 7 6 1.8354 -4.3063 1.0672 8 6 0.4794 -3.9033 1.0991 9 6 -0.7020 -4.7894 1.0665 10 8 -0.5598 -5.9948 1.1349 11 7 -1.9376 -4.2615 0.9611 12 6 -3.0986 -5.1534 0.8545 13 6 -3.9059 -4.7169 -0.3756 14 6 -4.3101 -3.2554 -0.1930 15 6 -3.0777 -2.3504 -0.1494 16 1 -2.5936 -2.2748 -1.1230 17 6 -3.5418 -0.9750 0.3950 18 7 -3.3416 -0.9958 1.8522 19 6 -3.6317 0.0293 2.7123 20 1 -4.0894 0.9338 2.3397 21 6 -3.3375 -0.0938 4.0633 22 7 -2.6966 -1.1561 4.5031 23 14 -3.8510 1.2479 5.2572 24 1 -5.2535 1.0175 5.6874 25 1 -2.9588 1.2226 6.4440 26 1 -3.7489 2.5704 4.5894 27 6 -2.7767 -2.3059 2.2339 28 6 -2.1004 -2.8205 0.9486 29 1 -1.1317 -2.3394 0.8133 30 7 0.4710 -2.5871 1.1692 31 1 -0.3633 0.5767 0.8507 32 1 -0.3633 0.4484 -0.9247 33 1 -0.3633 -1.0249 0.0742 34 1 1.8933 -0.5139 -0.8901 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 1.5907 -0.2742 2.1358 39 1 3.1247 -0.6282 1.3051 40 1 3.6315 -3.0792 1.1045 41 1 2.2163 -5.3155 1.0144 42 1 -2.7638 -6.1833 0.7309 43 1 -3.7139 -5.0684 1.7502 44 1 -4.7984 -5.3359 -0.4675 45 1 -3.2943 -4.8194 -1.2720 46 1 -4.8649 -3.1508 0.7394 47 1 -4.9473 -2.9533 -1.0242 48 1 -2.9448 -0.1790 -0.0503 49 1 -4.5960 -0.8213 0.1647 50 1 -2.4913 -1.2423 5.4472 51 1 -3.5693 -2.9861 2.5457 52 1 -2.0414 -2.1863 3.0296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050057583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:28 Heat of formation + Delta-G solvation = 89.141460 kcal Electronic energy + Delta-G solvation = -33635.775034 eV Core-core repulsion = 29638.512380 eV Total energy + Delta-G solvation = -3997.262654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.54391 -39.89301 -37.85966 -36.39102 -34.90045 -33.04498 -32.28560 -31.61512 -30.54947 -29.21925 -27.35684 -27.02819 -26.80411 -25.35668 -24.03303 -22.62984 -21.72139 -21.28707 -20.33071 -20.12115 -19.72629 -18.38286 -16.95440 -16.83683 -16.56741 -15.84022 -15.50893 -14.93477 -14.70462 -14.51562 -14.28306 -13.83068 -13.81942 -13.74249 -13.57772 -13.18322 -13.01331 -12.80097 -12.62378 -12.36193 -12.20390 -12.10936 -11.97485 -11.88376 -11.58421 -11.20272 -11.09442 -10.96414 -10.87133 -10.77115 -10.74363 -10.54090 -10.31744 -10.21712 -10.06988 -9.78428 -9.75398 -9.61133 -9.14144 -8.95076 -8.82684 -8.60599 -7.95102 -6.77026 -5.57186 -3.04243 1.90016 2.35087 2.59020 3.39437 3.44426 3.46332 3.51525 3.79504 4.40292 4.50389 4.62785 4.80737 4.85216 5.01744 5.08989 5.17863 5.29309 5.32198 5.37542 5.43707 5.50738 5.52928 5.57397 5.70949 5.75376 5.79643 5.84309 5.86017 5.89283 5.97212 5.99984 6.02663 6.14632 6.15396 6.17257 6.28907 6.32691 6.37037 6.43845 6.50446 6.65369 6.71356 6.78654 6.88794 6.95949 7.01651 7.27650 7.50857 7.66909 7.91951 7.94173 8.25254 8.44975 8.64311 9.25289 9.86829 10.51508 11.41081 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007658 B = 0.005913 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3655.463436 B = 4733.824863 C = 6558.326434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.144 4.144 4 C 0.120 3.880 5 N -0.280 5.280 6 C -0.024 4.024 7 C -0.182 4.182 8 C -0.017 4.017 9 C 0.601 3.399 10 O -0.552 6.552 11 N -0.574 5.574 12 C 0.111 3.889 13 C -0.130 4.130 14 C -0.111 4.111 15 C -0.110 4.110 16 H 0.071 0.929 17 C 0.142 3.858 18 N -0.595 5.595 19 C -0.218 4.218 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.150 3.850 28 C 0.074 3.926 29 H 0.154 0.846 30 N -0.231 5.231 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.177 0.823 41 H 0.158 0.842 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.022 0.978 49 H 0.023 0.977 50 H 0.250 0.750 51 H 0.005 0.995 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.933 -0.853 -10.905 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.126 4.126 3 C -0.202 4.202 4 C 0.000 4.000 5 N -0.066 5.066 6 C -0.166 4.166 7 C -0.210 4.210 8 C -0.176 4.176 9 C 0.387 3.613 10 O -0.430 6.430 11 N -0.304 5.304 12 C -0.012 4.012 13 C -0.168 4.168 14 C -0.149 4.149 15 C -0.130 4.130 16 H 0.089 0.911 17 C 0.016 3.984 18 N -0.322 5.322 19 C -0.346 4.346 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.564 5.564 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.209 1.209 27 C 0.024 3.976 28 C -0.031 4.031 29 H 0.170 0.830 30 N -0.066 5.066 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.194 0.806 41 H 0.176 0.824 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.040 0.960 49 H 0.041 0.959 50 H 0.061 0.939 51 H 0.022 0.978 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.342 -0.373 -10.558 14.103 hybrid contribution 0.091 0.156 0.659 0.683 sum 9.433 -0.217 -9.899 13.675 Atomic orbital electron populations 1.22146 0.92575 1.04947 1.02115 1.21431 0.98603 0.96174 0.96357 1.21780 1.00409 0.95075 1.02944 1.22230 1.01037 0.75378 1.01377 1.45857 1.03167 1.07713 1.49904 1.22801 0.97491 0.87276 1.09053 1.21651 0.91284 0.99243 1.08853 1.21991 0.94892 0.90119 1.10624 1.17055 0.81639 0.86296 0.76274 1.90712 1.85783 1.14093 1.52376 1.47326 1.05223 1.07772 1.70057 1.21685 0.86846 0.94469 0.98176 1.21867 0.99641 0.97306 0.97967 1.21515 0.97443 0.93693 1.02233 1.22442 0.96039 0.96534 0.97987 0.91065 1.21482 0.97153 0.93270 0.86534 1.44365 1.74310 1.13200 1.00283 1.19011 1.33004 0.94453 0.88177 0.90596 1.24747 1.01033 0.97868 0.96912 1.69716 1.45031 1.28133 1.13562 0.86163 0.77878 0.80996 0.80876 1.21724 1.21835 1.20854 1.22130 0.96999 0.84767 0.93717 1.23429 1.03692 0.78070 0.97934 0.83038 1.73445 1.03371 1.11384 1.18368 0.91326 0.93201 0.89774 0.91085 0.92782 0.91915 0.91843 0.88062 0.88282 0.80595 0.82433 0.89263 0.91104 0.91184 0.91981 0.91001 0.92595 0.96040 0.95913 0.93858 0.97752 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.01 37.16 0.33 -2.00 16 2 C -0.11 -1.17 3.12 -90.62 -0.28 -1.45 16 3 C -0.14 -1.28 9.19 37.15 0.34 -0.94 16 4 C 0.12 1.33 5.83 -4.04 -0.02 1.30 16 5 N -0.28 -3.92 3.34 -61.33 -0.21 -4.12 16 6 C -0.02 -0.29 11.40 -17.17 -0.20 -0.48 16 7 C -0.18 -2.70 10.81 -39.37 -0.43 -3.13 16 8 C -0.02 -0.31 6.86 -82.76 -0.57 -0.88 16 9 C 0.60 11.95 7.66 -12.39 -0.09 11.85 16 10 O -0.55 -11.73 16.26 5.31 0.09 -11.64 16 11 N -0.57 -11.02 2.74 -166.37 -0.46 -11.48 16 12 C 0.11 1.88 6.17 -3.64 -0.02 1.86 16 13 C -0.13 -1.89 6.11 -26.62 -0.16 -2.05 16 14 C -0.11 -1.81 4.65 -26.89 -0.13 -1.94 16 15 C -0.11 -1.98 3.60 -88.87 -0.32 -2.30 16 16 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 17 C 0.14 2.91 6.61 -2.64 -0.02 2.89 16 18 N -0.60 -14.73 3.40 -169.87 -0.58 -15.31 16 19 C -0.22 -5.89 10.27 -15.06 -0.15 -6.04 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.28 5.47 -17.43 -0.10 -0.37 16 22 N -0.92 -26.47 10.06 55.49 0.56 -25.91 16 23 Si 0.91 21.83 29.56 -169.99 -5.02 16.81 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.15 3.65 5.26 -2.83 -0.01 3.64 16 28 C 0.07 1.48 2.84 -67.46 -0.19 1.28 16 29 H 0.15 3.04 1.84 -123.38 -0.23 2.81 16 30 N -0.23 -4.05 6.40 33.42 0.21 -3.84 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.42 3.92 -51.93 -0.20 1.21 16 34 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.10 0.72 8.04 -51.93 -0.42 0.31 16 40 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 42 H 0.09 1.48 6.96 -51.93 -0.36 1.12 16 43 H 0.07 1.26 7.60 -51.93 -0.39 0.86 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.35 7.21 -51.93 -0.37 0.97 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.02 0.47 7.75 -51.93 -0.40 0.06 16 50 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 51 H 0.00 0.12 6.92 -51.93 -0.36 -0.24 16 52 H 0.12 3.31 5.62 -51.93 -0.29 3.01 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -32.29 393.75 -9.98 -42.27 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.50 Total: 6.04 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.02 Total: 1.25 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.47 Total: -60.66 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.29 -9.98 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050057583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.415 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds