Wall clock time and date at job start Wed Apr 1 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.46873 * 2 1 4 4 C 1.52996 * 109.46869 * 240.00322 * 2 1 3 5 5 N 1.46496 * 109.47042 * 120.00180 * 2 1 3 6 6 C 1.35036 * 124.88493 * 75.00027 * 5 2 1 7 7 C 1.35367 * 107.22999 * 180.02562 * 6 5 2 8 8 C 1.41503 * 105.50168 * 0.02562 * 7 6 5 9 9 C 1.47702 * 126.51761 * 180.02562 * 8 7 6 10 10 O 1.21575 * 120.00170 * 7.37146 * 9 8 7 11 11 N 1.34783 * 120.00263 * 187.36642 * 9 8 7 12 12 C 1.46794 * 119.52157 * 186.59457 * 11 9 8 13 13 C 1.53057 * 107.75774 * 231.94619 * 12 11 9 14 14 C 1.52722 * 108.48287 * 301.96021 * 13 12 11 15 15 C 1.52964 * 110.87981 * 63.72574 * 14 13 12 16 16 H 1.09001 * 111.91950 * 70.37784 * 15 14 13 17 17 C 1.55025 * 107.08535 * 194.29933 * 15 14 13 18 18 N 1.47099 * 107.13000 * 92.69572 * 17 15 14 19 19 C 1.36934 * 125.64889 * 180.19421 * 18 17 15 20 20 H 1.07997 * 119.99968 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00002 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00250 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 120.00019 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47429 * 89.99549 * 23 21 19 25 25 H 1.48494 * 109.46853 * 209.99869 * 23 21 19 26 26 H 1.48501 * 109.46589 * 329.99320 * 23 21 19 27 27 C 1.47679 * 108.70326 * 0.16197 * 18 17 15 28 28 C 1.45019 * 119.51557 * 6.86656 * 11 9 8 29 29 H 1.08990 * 109.86944 * 12.53158 * 28 11 9 30 30 N 1.28461 * 124.88394 * 255.02227 * 5 2 1 31 31 H 1.09000 * 109.46969 * 299.99850 * 1 2 3 32 32 H 1.09003 * 109.47300 * 59.99672 * 1 2 3 33 33 H 1.09007 * 109.47425 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47335 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47646 * 299.99753 * 3 2 1 36 36 H 1.09000 * 109.47200 * 60.00292 * 3 2 1 37 37 H 1.09002 * 109.47258 * 299.99806 * 4 2 1 38 38 H 1.08995 * 109.47458 * 59.99781 * 4 2 1 39 39 H 1.08997 * 109.47363 * 180.02562 * 4 2 1 40 40 H 1.07997 * 126.38522 * 0.02562 * 6 5 2 41 41 H 1.08000 * 127.24698 * 180.02562 * 7 6 5 42 42 H 1.08992 * 109.84469 * 351.51332 * 12 11 9 43 43 H 1.09004 * 109.84257 * 112.49736 * 12 11 9 44 44 H 1.09002 * 109.73329 * 182.14696 * 13 12 11 45 45 H 1.09005 * 109.56765 * 61.67856 * 13 12 11 46 46 H 1.08996 * 109.19502 * 303.36535 * 14 13 12 47 47 H 1.08999 * 109.20002 * 184.08280 * 14 13 12 48 48 H 1.09000 * 109.90755 * 212.07198 * 17 15 14 49 49 H 1.09008 * 109.90526 * 333.13950 * 17 15 14 50 50 H 0.96998 * 120.00778 * 180.02562 * 22 21 19 51 51 H 1.09002 * 110.44934 * 264.74722 * 27 18 17 52 52 H 1.09004 * 110.44843 * 142.20510 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 2.0054 -2.0291 1.3744 7 6 2.5350 -2.2760 2.5955 8 6 2.8615 -1.0071 3.1298 9 6 3.4708 -0.7389 4.4483 10 8 3.8637 -1.6616 5.1354 11 7 3.5912 0.5289 4.8898 12 6 4.3269 0.7955 6.1317 13 6 3.4269 1.6424 7.0348 14 6 3.0601 2.9234 6.2886 15 6 2.2365 2.6092 5.0384 16 1 1.2339 2.2623 5.2882 17 6 2.2249 3.8911 4.1667 18 7 3.3470 3.7827 3.2218 19 6 3.6877 4.7137 2.2771 20 1 3.1112 5.6219 2.1816 21 6 4.7740 4.4901 1.4424 22 7 5.4769 3.3835 1.5592 23 14 5.2392 5.7605 0.1542 24 1 6.2031 6.7275 0.7381 25 1 5.8635 5.0803 -1.0088 26 1 4.0207 6.4834 -0.2906 27 6 4.0457 2.5039 3.4610 28 6 2.9870 1.6091 4.1340 29 1 2.3062 1.2024 3.3862 30 7 2.5200 -0.1100 2.2264 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9562 0.8900 37 1 1.6766 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1299 -0.7216 -1.2491 40 1 1.6406 -2.7653 0.6736 41 1 2.6783 -3.2389 3.0633 42 1 4.5680 -0.1444 6.6280 43 1 5.2429 1.3429 5.9089 44 1 3.9577 1.8919 7.9536 45 1 2.5214 1.0847 7.2741 46 1 3.9732 3.4413 5.9955 47 1 2.4790 3.5683 6.9478 48 1 1.2845 3.9596 3.6199 49 1 2.3517 4.7706 4.7983 50 1 6.2362 3.2273 0.9762 51 1 4.8964 2.6533 4.1260 52 1 4.3711 2.0654 2.5176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050059758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:33 Heat of formation + Delta-G solvation = 86.432445 kcal Electronic energy + Delta-G solvation = -33678.364245 eV Core-core repulsion = 29680.984119 eV Total energy + Delta-G solvation = -3997.380126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.51050 -39.90987 -37.85325 -36.65132 -34.89347 -32.93038 -32.07827 -30.66823 -30.33352 -29.15313 -27.57376 -27.24890 -27.03303 -25.62148 -24.35578 -23.00898 -22.02470 -21.31390 -20.21369 -19.85230 -19.39886 -18.20758 -16.87910 -16.65988 -16.36961 -15.80426 -15.45238 -14.77548 -14.55826 -14.29996 -14.23287 -13.87138 -13.74839 -13.63657 -13.53438 -13.16263 -12.88345 -12.82932 -12.46559 -12.41613 -12.18293 -11.98665 -11.91248 -11.81670 -11.73869 -11.52686 -11.10317 -11.07887 -11.04465 -10.90606 -10.79703 -10.65813 -10.32882 -10.22077 -10.06086 -9.78638 -9.75015 -9.62172 -9.29235 -8.85682 -8.77903 -8.55831 -7.94728 -6.77318 -5.60583 -3.02677 1.99040 2.40801 2.61863 3.38040 3.43761 3.45315 3.52674 3.83196 4.40340 4.49837 4.69920 4.82480 4.83629 4.92251 5.13010 5.26160 5.31029 5.32178 5.38442 5.47914 5.50566 5.52433 5.61227 5.67475 5.71435 5.80726 5.82364 5.90002 5.92647 5.94747 5.97422 5.99474 6.04118 6.15865 6.24111 6.27471 6.33406 6.37200 6.39385 6.52461 6.67056 6.71168 6.78275 6.84158 6.95938 7.06907 7.27235 7.52561 7.66592 7.95859 7.95903 8.30743 8.42321 8.66823 9.24782 9.86185 10.51853 11.41677 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007630 B = 0.006461 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3668.652316 B = 4332.557356 C = 6826.262800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.166 3.834 3 C -0.143 4.143 4 C -0.157 4.157 5 N -0.271 5.271 6 C -0.026 4.026 7 C -0.183 4.183 8 C -0.025 4.025 9 C 0.603 3.397 10 O -0.553 6.553 11 N -0.576 5.576 12 C 0.111 3.889 13 C -0.130 4.130 14 C -0.110 4.110 15 C -0.111 4.111 16 H 0.072 0.928 17 C 0.142 3.858 18 N -0.598 5.598 19 C -0.218 4.218 20 H 0.075 0.925 21 C -0.007 4.007 22 N -0.915 5.915 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.163 3.837 28 C 0.094 3.906 29 H 0.129 0.871 30 N -0.223 5.223 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.173 0.827 41 H 0.156 0.844 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.020 0.980 49 H 0.024 0.976 50 H 0.250 0.750 51 H 0.008 0.992 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -8.798 -0.823 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.085 3.915 3 C -0.201 4.201 4 C -0.215 4.215 5 N -0.060 5.060 6 C -0.168 4.168 7 C -0.211 4.211 8 C -0.184 4.184 9 C 0.390 3.610 10 O -0.431 6.431 11 N -0.306 5.306 12 C -0.011 4.011 13 C -0.168 4.168 14 C -0.148 4.148 15 C -0.131 4.131 16 H 0.090 0.910 17 C 0.016 3.984 18 N -0.325 5.325 19 C -0.347 4.347 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.563 5.563 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.037 3.963 28 C -0.011 4.011 29 H 0.146 0.854 30 N -0.058 5.058 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.190 0.810 41 H 0.173 0.827 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.038 0.962 49 H 0.042 0.958 50 H 0.061 0.939 51 H 0.026 0.974 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.588 -8.014 -0.947 12.532 hybrid contribution 0.335 -0.033 -0.536 0.633 sum -9.253 -8.047 -1.484 12.352 Atomic orbital electron populations 1.22227 0.92703 1.02724 1.03787 1.21096 0.94552 0.94973 0.80924 1.21935 1.03725 0.90844 1.03561 1.22212 1.02810 1.00444 0.96040 1.46085 1.42054 1.04578 1.13237 1.22648 1.07792 0.86691 0.99714 1.21642 1.05904 0.98428 0.95175 1.21906 1.08630 0.91521 0.96341 1.17049 0.77956 0.82624 0.83381 1.90706 1.51586 1.43894 1.56911 1.47290 1.52678 1.06177 1.24426 1.21597 0.94599 1.00507 0.84406 1.21789 0.99887 0.97100 0.98004 1.21503 1.00786 0.96612 0.95893 1.22463 0.98191 0.97007 0.95457 0.90990 1.21466 0.91892 0.93987 0.91097 1.44396 1.31011 1.19530 1.37522 1.19002 1.09821 0.97746 1.08113 0.90676 1.24716 0.98051 0.97626 0.99855 1.69836 1.20890 1.24747 1.40838 0.86208 0.78194 0.80603 0.81301 1.21802 1.21828 1.20820 1.21920 0.89946 0.84198 1.00251 1.22867 0.97900 0.87287 0.93056 0.85416 1.73782 1.12394 1.24720 0.94894 0.91379 0.90163 0.92020 0.90299 0.91325 0.90033 0.91833 0.89971 0.91165 0.80999 0.82653 0.89224 0.91133 0.91179 0.91971 0.90961 0.92573 0.96249 0.95796 0.93948 0.97449 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.70 37.16 0.32 -1.22 16 2 C 0.17 2.05 1.21 -131.83 -0.16 1.89 16 3 C -0.14 -2.23 8.01 37.15 0.30 -1.93 16 4 C -0.16 -1.53 8.27 37.16 0.31 -1.23 16 5 N -0.27 -4.01 3.16 -48.63 -0.15 -4.17 16 6 C -0.03 -0.34 10.52 -17.17 -0.18 -0.52 16 7 C -0.18 -2.82 10.82 -39.36 -0.43 -3.24 16 8 C -0.02 -0.46 6.76 -82.77 -0.56 -1.02 16 9 C 0.60 12.06 7.65 -12.39 -0.09 11.96 16 10 O -0.55 -11.78 16.26 5.30 0.09 -11.69 16 11 N -0.58 -11.07 2.74 -166.63 -0.46 -11.53 16 12 C 0.11 1.90 6.17 -3.85 -0.02 1.87 16 13 C -0.13 -1.91 6.09 -26.84 -0.16 -2.07 16 14 C -0.11 -1.80 4.65 -26.89 -0.13 -1.93 16 15 C -0.11 -2.02 3.60 -88.87 -0.32 -2.34 16 16 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 17 C 0.14 2.92 6.61 -2.64 -0.02 2.90 16 18 N -0.60 -14.70 3.40 -169.87 -0.58 -15.28 16 19 C -0.22 -5.82 10.28 -15.06 -0.15 -5.98 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 22 N -0.91 -25.84 10.10 55.49 0.56 -25.28 16 23 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.16 3.91 5.05 -2.83 -0.01 3.89 16 28 C 0.09 1.89 2.56 -67.46 -0.17 1.71 16 29 H 0.13 2.65 4.34 -62.35 -0.27 2.37 16 30 N -0.22 -4.06 7.41 33.42 0.25 -3.81 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.48 7.99 -51.93 -0.42 1.06 16 37 H 0.06 0.50 7.27 -51.93 -0.38 0.12 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.17 1.53 7.47 -52.49 -0.39 1.14 16 41 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.09 1.50 6.92 -51.93 -0.36 1.14 16 43 H 0.07 1.25 7.62 -51.93 -0.40 0.85 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.07 1.36 7.21 -51.93 -0.37 0.98 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.02 0.49 7.75 -51.92 -0.40 0.09 16 50 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.01 0.20 6.94 -51.93 -0.36 -0.16 16 52 H 0.11 3.03 5.94 -51.93 -0.31 2.73 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -31.41 397.70 -9.60 -41.01 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -8.70 Total: 5.82 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.58 Total: 2.49 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.38 Total: -60.07 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.41 -9.60 -41.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050059758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.440 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds