Wall clock time and date at job start Wed Apr 1 2020 04:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47043 * 2 1 4 4 C 1.53006 * 109.46968 * 119.99568 * 2 1 3 5 5 N 1.46499 * 109.47124 * 175.26769 * 4 2 1 6 6 N 1.28445 * 125.19023 * 278.84803 * 5 4 2 7 7 C 1.30861 * 110.92329 * 180.27975 * 6 5 4 8 8 C 1.39670 * 107.86438 * 359.71356 * 7 6 5 9 9 C 1.36598 * 125.18702 * 98.63247 * 5 4 2 10 10 C 1.47159 * 126.88869 * 0.02562 * 9 5 4 11 11 O 1.21635 * 119.99769 * 332.92044 * 10 9 5 12 12 N 1.34773 * 120.00266 * 152.92565 * 10 9 5 13 13 C 1.46807 * 119.61527 * 352.66371 * 12 10 9 14 14 C 1.51803 * 107.79446 * 231.87490 * 13 12 10 15 15 C 1.52753 * 109.35015 * 302.57954 * 14 13 12 16 16 C 1.52947 * 110.73602 * 62.97598 * 15 14 13 17 17 H 1.09001 * 112.28078 * 71.23823 * 16 15 14 18 18 C 1.55533 * 107.00649 * 195.25086 * 16 15 14 19 19 N 1.49346 * 103.81267 * 78.25819 * 18 16 15 20 20 C 1.36934 * 125.47697 * 204.40622 * 19 18 16 21 21 H 1.08003 * 119.99893 * 359.89072 * 20 19 18 22 22 C 1.38813 * 120.00228 * 179.88971 * 20 19 18 23 23 N 1.31621 * 119.99865 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00032 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47142 * 90.00099 * 24 22 20 26 26 H 1.48504 * 109.46867 * 209.99899 * 24 22 20 27 27 H 1.48496 * 109.47253 * 329.99572 * 24 22 20 28 28 C 1.47288 * 108.82260 * 24.33360 * 19 18 16 29 29 C 1.45170 * 119.61662 * 172.69435 * 12 10 9 30 30 H 1.09003 * 109.71158 * 12.18034 * 29 12 10 31 31 H 1.08998 * 109.47448 * 304.93484 * 1 2 3 32 32 H 1.09002 * 109.46679 * 64.93500 * 1 2 3 33 33 H 1.09007 * 109.47065 * 184.93214 * 1 2 3 34 34 H 1.08992 * 109.47458 * 239.99167 * 2 1 3 35 35 H 1.09000 * 109.47008 * 182.61527 * 3 2 1 36 36 H 1.09001 * 109.46979 * 302.61099 * 3 2 1 37 37 H 1.09000 * 109.47485 * 62.61351 * 3 2 1 38 38 H 1.09004 * 109.46851 * 55.26432 * 4 2 1 39 39 H 1.09004 * 109.47030 * 295.27005 * 4 2 1 40 40 H 1.08002 * 126.06795 * 179.75014 * 7 6 5 41 41 H 1.08003 * 127.31740 * 179.97438 * 8 7 6 42 42 H 1.08994 * 109.82147 * 351.76713 * 13 12 10 43 43 H 1.09000 * 109.81688 * 112.68957 * 13 12 10 44 44 H 1.08999 * 109.73631 * 182.28782 * 14 13 12 45 45 H 1.09002 * 108.66330 * 62.22001 * 14 13 12 46 46 H 1.08998 * 109.22143 * 302.66197 * 15 14 13 47 47 H 1.09004 * 109.21609 * 183.27823 * 15 14 13 48 48 H 1.09010 * 110.38960 * 196.64577 * 18 16 15 49 49 H 1.08997 * 110.39519 * 319.03548 * 18 16 15 50 50 H 0.97004 * 119.99594 * 180.02562 * 23 22 20 51 51 H 1.08996 * 109.98716 * 239.66575 * 28 19 18 52 52 H 1.08999 * 110.01873 * 118.37074 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5005 -0.8207 1.1938 6 7 4.1577 -1.7036 0.5316 7 6 5.4468 -1.5375 0.6831 8 6 5.6416 -0.4364 1.5199 9 6 4.3713 0.0139 1.8349 10 6 4.0277 1.1582 2.6941 11 8 2.9787 1.7507 2.5269 12 7 4.8753 1.5496 3.6660 13 6 6.0590 0.7353 3.9677 14 6 6.0683 0.4660 5.4617 15 6 6.0656 1.7946 6.2155 16 6 4.7858 2.5799 5.9242 17 1 3.9100 2.1314 6.3932 18 6 5.0322 4.0419 6.3941 19 7 5.8573 4.6340 5.2991 20 6 6.7080 5.6988 5.4321 21 1 6.8217 6.1827 6.3909 22 6 7.4243 6.1562 4.3345 23 7 7.2862 5.5661 3.1662 24 14 8.5854 7.6083 4.5161 25 1 9.9384 7.1175 4.8816 26 1 8.6577 8.3479 3.2304 27 1 8.0829 8.5137 5.5804 28 6 5.6066 3.8841 4.0565 29 6 4.6069 2.7713 4.4029 30 1 3.5934 3.1127 4.1920 31 1 -0.3634 0.5885 0.8424 32 1 -0.3633 0.4354 -0.9309 33 1 -0.3633 -1.0239 0.0884 34 1 1.8934 -0.5139 -0.8898 35 1 3.1290 1.4429 -0.0469 36 1 1.6389 1.9697 -0.8657 37 1 1.7155 1.9427 0.9125 38 1 1.6090 -1.7215 1.2928 39 1 1.7475 -0.1607 2.1373 40 1 6.2225 -2.1440 0.2392 41 1 6.5834 -0.0241 1.8510 42 1 6.0103 -0.2051 3.4189 43 1 6.9621 1.2793 3.6911 44 1 6.9585 -0.1040 5.7274 45 1 5.1750 -0.1030 5.7191 46 1 6.9274 2.3852 5.9048 47 1 6.1311 1.5999 7.2860 48 1 4.0860 4.5749 6.4891 49 1 5.5708 4.0506 7.3417 50 1 7.7871 5.8855 2.3993 51 1 6.5363 3.4490 3.6900 52 1 5.1816 4.5450 3.3011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050060480.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:38 Heat of formation + Delta-G solvation = 79.549945 kcal Electronic energy + Delta-G solvation = -32772.348072 eV Core-core repulsion = 28774.669498 eV Total energy + Delta-G solvation = -3997.678573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.62316 -40.12264 -37.88664 -36.59919 -35.26762 -32.97566 -32.04378 -31.99042 -30.93089 -29.14334 -27.48451 -27.14514 -26.63780 -25.56895 -24.33848 -22.52440 -22.24712 -21.65922 -20.63771 -20.10165 -19.51088 -18.41549 -17.19251 -16.88396 -16.47535 -16.06232 -15.49185 -15.27288 -14.88041 -14.66449 -14.39629 -14.22298 -13.87935 -13.73105 -13.67582 -13.47574 -13.06247 -12.90185 -12.73428 -12.61855 -12.24299 -12.07529 -11.87166 -11.85473 -11.57382 -11.29670 -11.11925 -11.04699 -11.00326 -10.86696 -10.81114 -10.69721 -10.64769 -10.38277 -10.25740 -9.93325 -9.83056 -9.63442 -9.60830 -9.14215 -8.86073 -8.62298 -8.18327 -6.85872 -5.71440 -3.05449 1.38750 2.36773 2.62831 3.24396 3.27398 3.39479 3.44940 3.46850 4.40006 4.45835 4.49291 4.61889 4.85217 4.89011 4.97922 5.14804 5.19209 5.21204 5.25783 5.33063 5.37193 5.46403 5.47564 5.50625 5.55592 5.67415 5.68291 5.74229 5.77888 5.81144 5.87950 5.89580 6.00558 6.01173 6.05950 6.17648 6.19018 6.25660 6.28101 6.41507 6.49256 6.53853 6.62376 6.71958 6.74983 6.88165 6.91633 7.43043 7.53382 7.70834 7.80030 8.06682 8.20427 8.35149 9.19283 9.78723 10.44955 11.39687 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.003339 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.542045 B = 8384.367471 C = 8760.031303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C -0.149 4.149 4 C 0.124 3.876 5 N -0.255 5.255 6 N -0.284 5.284 7 C -0.005 4.005 8 C -0.198 4.198 9 C -0.022 4.022 10 C 0.583 3.417 11 O -0.537 6.537 12 N -0.568 5.568 13 C 0.086 3.914 14 C -0.130 4.130 15 C -0.110 4.110 16 C -0.110 4.110 17 H 0.075 0.925 18 C 0.135 3.865 19 N -0.604 5.604 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.180 3.820 29 C 0.118 3.882 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.184 0.816 41 H 0.167 0.833 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.056 0.944 48 H 0.023 0.977 49 H 0.047 0.953 50 H 0.252 0.748 51 H 0.052 0.948 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 -16.283 -1.696 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.206 4.206 4 C 0.004 3.996 5 N -0.043 5.043 6 N -0.116 5.116 7 C -0.181 4.181 8 C -0.227 4.227 9 C -0.150 4.150 10 C 0.370 3.630 11 O -0.415 6.415 12 N -0.298 5.298 13 C -0.037 4.037 14 C -0.168 4.168 15 C -0.147 4.147 16 C -0.130 4.130 17 H 0.093 0.907 18 C 0.009 3.991 19 N -0.332 5.332 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.055 3.945 29 C 0.014 3.986 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.201 0.799 41 H 0.184 0.816 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.075 0.925 48 H 0.041 0.959 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.070 0.930 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.851 -16.480 -2.421 18.863 hybrid contribution 1.470 1.294 0.307 1.983 sum -7.381 -15.186 -2.114 17.017 Atomic orbital electron populations 1.21760 0.93789 1.01816 1.02704 1.21427 0.96428 0.97815 0.96732 1.21981 1.01040 0.94447 1.03100 1.22245 0.73083 1.02660 1.01626 1.45710 1.07375 1.19156 1.32029 1.73141 1.07246 1.14576 1.16635 1.23551 0.92492 0.99936 1.02164 1.22487 0.96878 0.99384 1.03919 1.21505 0.90670 0.98488 1.04375 1.16985 0.83861 0.82245 0.79926 1.90735 1.23891 1.56766 1.70155 1.47166 1.24317 1.24253 1.34081 1.22162 0.88591 0.96043 0.96869 1.21578 1.01778 0.98373 0.95093 1.21442 0.99033 0.95127 0.99129 1.22577 0.97480 0.97590 0.95323 0.90660 1.22099 0.94476 0.89903 0.92643 1.44857 1.48921 1.35295 1.04093 1.19054 1.15795 1.05132 0.95509 0.90378 1.24781 1.00363 0.99596 0.95626 1.69952 1.44739 1.42410 0.99757 0.86142 0.80832 0.82096 0.76825 1.21669 1.21732 1.20746 1.21225 0.95154 0.89419 0.88725 1.21929 1.02058 0.84278 0.90320 0.88741 0.91950 0.91954 0.92594 0.90773 0.93241 0.93304 0.89622 0.88903 0.87240 0.79876 0.81564 0.88157 0.90414 0.90924 0.92319 0.89904 0.92537 0.95908 0.93461 0.93775 0.93023 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.10 -1.17 3.13 -90.62 -0.28 -1.45 16 3 C -0.15 -2.04 7.67 37.16 0.29 -1.76 16 4 C 0.12 1.44 5.40 -4.04 -0.02 1.42 16 5 N -0.26 -3.48 3.02 -57.13 -0.17 -3.65 16 6 N -0.28 -3.82 11.90 30.59 0.36 -3.46 16 7 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 8 C -0.20 -2.53 8.55 -38.98 -0.33 -2.87 16 9 C -0.02 -0.32 5.37 -82.06 -0.44 -0.76 16 10 C 0.58 9.74 7.38 -12.64 -0.09 9.65 16 11 O -0.54 -9.85 11.12 5.25 0.06 -9.79 16 12 N -0.57 -9.38 2.72 -167.76 -0.46 -9.84 16 13 C 0.09 1.18 4.79 -4.48 -0.02 1.16 16 14 C -0.13 -1.66 5.99 -27.47 -0.16 -1.82 16 15 C -0.11 -1.68 4.84 -26.89 -0.13 -1.81 16 16 C -0.11 -1.85 3.67 -88.58 -0.33 -2.17 16 17 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 18 C 0.13 2.66 6.67 -1.11 -0.01 2.65 16 19 N -0.60 -14.83 3.03 -168.36 -0.51 -15.34 16 20 C -0.23 -6.14 10.29 -15.06 -0.15 -6.29 16 21 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -26.64 10.33 55.49 0.57 -26.06 16 24 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.18 4.27 4.57 -3.32 -0.02 4.26 16 29 C 0.12 2.24 2.96 -67.64 -0.20 2.04 16 30 H 0.09 1.92 6.92 -51.93 -0.36 1.56 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.79 6.98 -51.93 -0.36 0.43 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.32 6.01 -51.93 -0.31 1.01 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.11 1.35 6.60 -51.93 -0.34 1.01 16 40 H 0.18 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.17 1.89 6.35 -52.48 -0.33 1.56 16 42 H 0.10 1.19 4.17 -51.93 -0.22 0.98 16 43 H 0.08 1.17 7.54 -51.93 -0.39 0.78 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.54 7.27 -51.93 -0.38 1.16 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 49 H 0.05 0.89 7.99 -51.93 -0.41 0.48 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 51 H 0.05 1.33 6.51 -51.93 -0.34 0.99 16 52 H 0.05 1.25 7.52 -51.93 -0.39 0.86 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -31.05 388.58 -9.64 -40.69 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.46 Total: 4.00 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.87 Total: 0.77 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.20 Total: -58.36 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.06 Total: -9.79 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.05 -9.64 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050060480.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.240 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds