Wall clock time and date at job start Wed Apr 1 2020 04:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47409 * 2 1 4 4 C 1.52999 * 109.47170 * 239.99612 * 2 1 3 5 5 N 1.46501 * 109.47017 * 120.00075 * 2 1 3 6 6 C 1.34263 * 125.75538 * 75.26179 * 5 2 1 7 7 C 1.38049 * 107.41324 * 180.14940 * 6 5 2 8 8 C 1.47428 * 126.41047 * 179.87220 * 7 6 5 9 9 O 1.21602 * 120.00036 * 27.23405 * 8 7 6 10 10 N 1.34771 * 120.00073 * 207.22979 * 8 7 6 11 11 C 1.46805 * 119.61996 * 186.01903 * 10 8 7 12 12 C 1.53448 * 107.66010 * 232.18517 * 11 10 8 13 13 C 1.52748 * 108.48675 * 302.05917 * 12 11 10 14 14 C 1.52947 * 110.77478 * 63.64609 * 13 12 11 15 15 H 1.08998 * 112.27658 * 71.22571 * 14 13 12 16 16 C 1.55529 * 107.01119 * 195.24000 * 14 13 12 17 17 N 1.48535 * 104.60294 * 77.74509 * 16 14 13 18 18 C 1.36937 * 125.78506 * 204.64241 * 17 16 14 19 19 H 1.07998 * 119.99463 * 359.87227 * 18 17 16 20 20 C 1.38816 * 120.00353 * 179.87800 * 18 17 16 21 21 N 1.31621 * 119.99576 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00024 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46878 * 59.99881 * 22 20 18 24 24 H 1.48496 * 109.46671 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46742 * 299.99637 * 22 20 18 26 26 C 1.47289 * 108.51749 * 24.55631 * 17 16 14 27 27 C 1.45177 * 119.61466 * 5.74137 * 10 8 7 28 28 H 1.08999 * 109.70583 * 12.22634 * 27 10 8 29 29 C 1.41284 * 107.17202 * 359.60970 * 7 6 5 30 30 N 1.30449 * 108.02659 * 0.23919 * 29 7 6 31 31 H 1.09004 * 109.47479 * 300.00261 * 1 2 3 32 32 H 1.09004 * 109.47333 * 59.99921 * 1 2 3 33 33 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47608 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46937 * 300.00321 * 3 2 1 36 36 H 1.09004 * 109.47013 * 59.99453 * 3 2 1 37 37 H 1.09003 * 109.47428 * 300.00346 * 4 2 1 38 38 H 1.09001 * 109.46758 * 60.00535 * 4 2 1 39 39 H 1.09003 * 109.47029 * 179.97438 * 4 2 1 40 40 H 1.07999 * 126.29292 * 0.02562 * 6 5 2 41 41 H 1.09005 * 109.81826 * 351.72418 * 11 10 8 42 42 H 1.08998 * 109.82587 * 112.64295 * 11 10 8 43 43 H 1.09006 * 109.63078 * 61.75869 * 12 11 10 44 44 H 1.08997 * 109.63526 * 182.35905 * 12 11 10 45 45 H 1.09001 * 109.21866 * 183.97558 * 13 12 11 46 46 H 1.08999 * 109.21904 * 303.35618 * 13 12 11 47 47 H 1.08999 * 110.39266 * 196.65155 * 16 14 13 48 48 H 1.08998 * 110.39242 * 319.04564 * 16 14 13 49 49 H 0.97001 * 119.99405 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.99239 * 239.70185 * 26 17 16 51 51 H 1.09004 * 110.02408 * 118.40329 * 26 17 16 52 52 H 1.08005 * 125.98904 * 180.22523 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0184 -2.0192 1.3899 7 6 2.5563 -2.2545 2.6393 8 6 2.7499 -3.5705 3.2750 9 8 2.9071 -4.5608 2.5871 10 7 2.7529 -3.6759 4.6186 11 6 3.0778 -4.9635 5.2446 12 6 1.9528 -5.2973 6.2334 13 6 1.8484 -4.1616 7.2496 14 6 1.4447 -2.8555 6.5639 15 1 0.4061 -2.8662 6.2333 16 6 1.7403 -1.7045 7.5673 17 7 3.2101 -1.5058 7.4868 18 6 4.0010 -0.9722 8.4692 19 1 3.5610 -0.6515 9.4018 20 6 5.3682 -0.8435 8.2662 21 7 5.9044 -1.2348 7.1296 22 14 6.4470 -0.1163 9.6065 23 1 6.3430 -0.9489 10.8317 24 1 7.8583 -0.0889 9.1454 25 1 5.9974 1.2665 9.9080 26 6 3.6752 -1.9813 6.1726 27 6 2.4408 -2.5134 5.4302 28 1 2.0262 -1.7262 4.8005 29 6 2.8919 -0.9984 3.1922 30 7 2.5684 -0.0771 2.3272 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7490 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7209 -1.2494 40 1 1.6614 -2.7664 0.6966 41 1 3.1418 -5.7396 4.4819 42 1 4.0264 -4.8873 5.7760 43 1 1.0098 -5.3955 5.6957 44 1 2.1829 -6.2298 6.7487 45 1 1.1006 -4.4190 7.9997 46 1 2.8139 -4.0266 7.7372 47 1 1.2151 -0.7969 7.2697 48 1 1.4522 -1.9974 8.5769 49 1 6.8597 -1.1445 6.9876 50 1 4.4051 -2.7803 6.3024 51 1 4.1199 -1.1579 5.6137 52 1 3.3380 -0.8303 4.1614 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050082268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:43 Heat of formation + Delta-G solvation = 80.490826 kcal Electronic energy + Delta-G solvation = -32545.036879 eV Core-core repulsion = 28547.399105 eV Total energy + Delta-G solvation = -3997.637774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.48677 -39.88382 -37.81393 -36.85245 -34.82500 -32.94006 -32.14006 -30.69438 -30.00391 -29.07935 -27.79189 -27.67348 -27.32598 -25.55282 -24.12819 -23.06336 -21.81996 -21.53031 -20.35290 -19.76556 -19.46524 -18.14731 -17.00353 -16.80609 -16.25488 -15.54388 -15.41593 -15.04207 -14.59988 -14.47990 -14.37985 -14.10142 -13.81571 -13.67136 -13.60966 -13.12367 -12.81112 -12.73573 -12.61863 -12.59237 -12.45438 -12.25339 -12.08641 -11.80942 -11.72209 -11.55288 -11.46833 -11.43313 -11.01604 -10.96628 -10.76226 -10.71101 -10.54455 -10.35772 -10.11950 -9.90078 -9.85916 -9.70107 -9.42167 -9.23780 -8.63208 -8.47321 -7.98463 -6.85839 -5.71649 -3.05538 1.74396 2.34872 2.47943 3.41138 3.45201 3.47100 3.47883 3.69605 4.17155 4.42868 4.49563 4.53345 4.76142 4.86255 5.05409 5.10759 5.18543 5.19780 5.30212 5.34209 5.36511 5.39075 5.46095 5.49841 5.51148 5.53022 5.56352 5.60526 5.67544 5.75964 5.81777 5.84044 5.91389 5.95203 6.02775 6.08109 6.19161 6.30063 6.32552 6.38692 6.48543 6.64422 6.68475 6.73818 6.96057 6.98207 7.07143 7.37375 7.51846 7.77019 7.77650 7.98310 8.20763 8.64644 9.19264 9.79252 10.45052 11.39680 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.003727 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.970812 B = 7510.814179 C = 8919.525566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.178 3.822 3 C -0.144 4.144 4 C -0.162 4.162 5 N -0.357 5.357 6 C 0.116 3.884 7 C -0.286 4.286 8 C 0.596 3.404 9 O -0.564 6.564 10 N -0.582 5.582 11 C 0.113 3.887 12 C -0.129 4.129 13 C -0.110 4.110 14 C -0.110 4.110 15 H 0.077 0.923 16 C 0.134 3.866 17 N -0.602 5.602 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.005 4.005 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.173 3.827 27 C 0.099 3.901 28 H 0.095 0.905 29 C 0.078 3.922 30 N -0.294 5.294 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.178 0.822 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.081 0.919 47 H 0.022 0.978 48 H 0.045 0.955 49 H 0.253 0.747 50 H 0.057 0.943 51 H 0.047 0.953 52 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 -1.025 -13.906 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.095 3.905 3 C -0.201 4.201 4 C -0.220 4.220 5 N -0.137 5.137 6 C -0.035 4.035 7 C -0.301 4.301 8 C 0.385 3.615 9 O -0.445 6.445 10 N -0.312 5.312 11 C -0.009 4.009 12 C -0.167 4.167 13 C -0.147 4.147 14 C -0.130 4.130 15 H 0.095 0.905 16 C 0.008 3.992 17 N -0.329 5.329 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.047 3.953 27 C -0.006 4.006 28 H 0.113 0.887 29 C -0.109 4.109 30 N -0.113 5.113 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.195 0.805 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.040 0.960 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.065 0.935 52 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.607 -0.141 -14.582 18.638 hybrid contribution 0.700 -0.433 0.980 1.280 sum -10.907 -0.575 -13.602 17.445 Atomic orbital electron populations 1.22273 0.92854 1.03165 1.03493 1.20778 0.94435 0.93970 0.81298 1.21912 1.02431 0.92687 1.03103 1.22277 1.02646 1.01055 0.96004 1.48825 1.46482 1.04060 1.14296 1.22674 0.97806 0.86523 0.96487 1.20264 1.17976 0.94549 0.97312 1.17311 0.75620 0.86942 0.81632 1.90694 1.52293 1.38569 1.62906 1.47232 1.67925 1.11107 1.04898 1.21646 0.97995 0.85097 0.96139 1.21852 0.98723 0.98641 0.97473 1.21449 1.02974 0.93215 0.97112 1.22645 0.97632 0.96557 0.96152 0.90504 1.21966 0.86729 0.93954 0.96523 1.44638 1.00766 1.73331 1.14175 1.18992 0.88589 1.33662 0.94365 0.90402 1.24765 0.96622 1.01400 0.97390 1.69914 1.11156 1.52378 1.23434 0.86221 0.79775 0.78937 0.80945 1.21252 1.21655 1.21211 1.21365 0.90726 0.97889 0.85274 1.22423 0.98261 0.87139 0.92749 0.88700 1.24947 0.97113 0.89322 0.99538 1.77229 1.18133 1.21831 0.94090 0.91364 0.90366 0.91772 0.91445 0.91047 0.90728 0.91475 0.90040 0.91279 0.80452 0.89322 0.90947 0.92163 0.91282 0.92704 0.90012 0.96033 0.93657 0.93619 0.92539 0.93539 0.77772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 8.72 37.16 0.32 -0.89 16 2 C 0.18 1.66 1.23 -131.82 -0.16 1.50 16 3 C -0.14 -1.31 8.07 37.16 0.30 -1.01 16 4 C -0.16 -1.18 8.28 37.16 0.31 -0.88 16 5 N -0.36 -4.71 3.41 -48.11 -0.16 -4.88 16 6 C 0.12 1.61 10.49 -16.56 -0.17 1.44 16 7 C -0.29 -4.82 5.52 -105.07 -0.58 -5.40 16 8 C 0.60 11.04 7.59 -12.52 -0.10 10.94 16 9 O -0.56 -11.47 16.33 5.28 0.09 -11.38 16 10 N -0.58 -10.44 2.71 -166.44 -0.45 -10.89 16 11 C 0.11 1.89 6.19 -3.64 -0.02 1.87 16 12 C -0.13 -1.87 6.10 -26.63 -0.16 -2.03 16 13 C -0.11 -1.77 4.82 -26.89 -0.13 -1.90 16 14 C -0.11 -1.86 3.73 -88.38 -0.33 -2.19 16 15 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 16 C 0.13 2.62 6.58 -1.57 -0.01 2.61 16 17 N -0.60 -14.43 3.02 -169.04 -0.51 -14.94 16 18 C -0.23 -6.08 10.30 -15.06 -0.16 -6.24 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 21 N -0.92 -26.23 10.33 55.49 0.57 -25.66 16 22 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.17 3.94 4.25 -3.32 -0.01 3.93 16 27 C 0.10 1.83 2.16 -67.43 -0.15 1.68 16 28 H 0.10 1.72 4.31 -51.93 -0.22 1.50 16 29 C 0.08 1.36 9.55 -16.98 -0.16 1.19 16 30 N -0.29 -4.81 11.56 30.86 0.36 -4.46 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 37 H 0.07 0.46 7.33 -51.93 -0.38 0.08 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.18 2.00 7.52 -52.49 -0.39 1.61 16 41 H 0.09 1.46 6.93 -51.93 -0.36 1.10 16 42 H 0.07 1.30 7.52 -51.93 -0.39 0.91 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.59 7.26 -51.93 -0.38 1.21 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.05 0.86 7.99 -51.93 -0.41 0.44 16 49 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 50 H 0.06 1.46 6.49 -51.93 -0.34 1.12 16 51 H 0.05 1.18 5.56 -51.93 -0.29 0.89 16 52 H 0.21 3.92 4.12 -52.48 -0.22 3.71 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -31.59 394.23 -8.92 -40.51 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.42 Total: 4.64 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.31 Total: 4.39 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.20 Total: -60.83 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.59 -8.92 -40.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050082268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.006 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds