Wall clock time and date at job start Wed Apr 1 2020 04:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46757 * 2 1 4 4 C 1.52996 * 109.47438 * 119.99626 * 2 1 3 5 5 N 1.46494 * 109.47507 * 174.42046 * 4 2 1 6 6 N 1.28439 * 125.19043 * 276.52658 * 5 4 2 7 7 C 1.30870 * 110.92832 * 180.27728 * 6 5 4 8 8 C 1.39674 * 107.85763 * 359.71427 * 7 6 5 9 9 C 1.36601 * 125.18937 * 96.30947 * 5 4 2 10 10 C 1.47161 * 126.88663 * 359.97438 * 9 5 4 11 11 O 1.21629 * 119.99630 * 357.16843 * 10 9 5 12 12 N 1.34772 * 120.00193 * 177.16275 * 10 9 5 13 13 C 1.47670 * 134.45404 * 184.99858 * 12 10 9 14 14 C 1.53514 * 85.97393 * 204.33514 * 13 12 10 15 15 C 1.47666 * 134.45969 * 5.02485 * 12 10 9 16 16 C 1.52676 * 113.57321 * 91.01976 * 14 13 12 17 17 C 1.53337 * 109.11457 * 73.81162 * 16 14 13 18 18 N 1.46882 * 108.76098 * 52.40467 * 17 16 14 19 19 C 1.36935 * 120.45958 * 124.47594 * 18 17 16 20 20 H 1.08002 * 120.00118 * 328.44247 * 19 18 17 21 21 C 1.38809 * 120.00053 * 148.72458 * 19 18 17 22 22 N 1.31620 * 119.99717 * 349.64460 * 21 19 18 23 23 Si 1.86797 * 120.00249 * 169.64728 * 21 19 18 24 24 H 1.48499 * 109.47019 * 60.00247 * 23 21 19 25 25 H 1.48510 * 109.47133 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47160 * 299.99861 * 23 21 19 27 27 C 1.46884 * 119.07116 * 304.74456 * 18 17 16 28 28 C 1.52677 * 113.56230 * 222.23171 * 14 13 12 29 29 H 1.09001 * 109.47464 * 299.99795 * 1 2 3 30 30 H 1.09001 * 109.47596 * 60.00704 * 1 2 3 31 31 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47290 * 239.99685 * 2 1 3 33 33 H 1.08998 * 109.47569 * 63.81445 * 3 2 1 34 34 H 1.08996 * 109.46990 * 183.81724 * 3 2 1 35 35 H 1.09006 * 109.46932 * 303.81524 * 3 2 1 36 36 H 1.09002 * 109.46861 * 54.41937 * 4 2 1 37 37 H 1.09000 * 109.47133 * 294.42564 * 4 2 1 38 38 H 1.07999 * 126.07317 * 179.74649 * 7 6 5 39 39 H 1.08005 * 127.31748 * 180.02562 * 8 7 6 40 40 H 1.08999 * 113.79461 * 90.07289 * 13 12 10 41 41 H 1.09001 * 113.90017 * 318.61061 * 13 12 10 42 42 H 1.09006 * 113.78304 * 41.39313 * 15 12 10 43 43 H 1.08997 * 113.79389 * 269.93454 * 15 12 10 44 44 H 1.09001 * 109.52532 * 313.91967 * 16 14 13 45 45 H 1.08996 * 109.58992 * 193.74377 * 16 14 13 46 46 H 1.09004 * 109.58511 * 292.62174 * 17 16 14 47 47 H 1.08994 * 109.58773 * 172.19310 * 17 16 14 48 48 H 0.97004 * 120.00069 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.58668 * 175.04364 * 27 18 17 50 50 H 1.08993 * 109.58713 * 295.47760 * 27 18 17 51 51 H 1.08998 * 109.52992 * 46.08207 * 28 14 13 52 52 H 1.09002 * 109.52811 * 166.22836 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 7 3.4988 -0.8385 1.1840 6 7 4.1401 -1.7574 0.5562 7 6 5.4325 -1.5984 0.6873 8 6 5.6470 -0.4626 1.4714 9 6 4.3846 0.0149 1.7781 10 6 4.0614 1.2011 2.5869 11 8 2.9020 1.5352 2.7401 12 7 5.0501 1.9171 3.1580 13 6 5.0925 3.0692 4.0809 14 6 6.4828 3.3501 3.4939 15 6 6.5251 1.8644 3.1114 16 6 6.4593 4.2909 2.2917 17 6 6.1886 5.7199 2.7775 18 7 7.1507 6.0486 3.8376 19 6 7.9504 7.1550 3.7305 20 1 8.2750 7.4946 2.7580 21 6 8.3487 7.8366 4.8722 22 7 7.8008 7.5504 6.0343 23 14 9.6623 9.1599 4.7596 24 1 9.2052 10.2341 3.8417 25 1 9.9054 9.7322 6.1082 26 1 10.9200 8.5660 4.2393 27 6 7.2470 5.1707 5.0113 28 6 7.5206 3.7415 4.5431 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.7335 1.9363 0.9221 34 1 3.1277 1.4434 -0.0684 35 1 1.6217 1.9757 -0.8539 36 1 1.5974 -1.7159 1.3007 37 1 1.7605 -0.1529 2.1364 38 1 6.1974 -2.2325 0.2639 39 1 6.5962 -0.0453 1.7737 40 1 5.1083 2.7886 5.1340 41 1 4.3565 3.8414 3.8572 42 1 6.9270 1.6780 2.1154 43 1 6.9667 1.2257 3.8764 44 1 5.6708 3.9842 1.6044 45 1 7.4216 4.2557 1.7811 46 1 5.1742 5.7860 3.1712 47 1 6.3069 6.4165 1.9477 48 1 8.0794 8.0265 6.8322 49 1 8.0623 5.5059 5.6523 50 1 6.3089 5.1973 5.5655 51 1 7.4561 3.0601 5.3913 52 1 8.5181 3.6872 4.1070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050533997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:28 Heat of formation + Delta-G solvation = 95.701257 kcal Electronic energy + Delta-G solvation = -31784.802954 eV Core-core repulsion = 27787.824754 eV Total energy + Delta-G solvation = -3996.978200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.70458 -40.60334 -38.25001 -36.70800 -35.84832 -32.67981 -32.15090 -31.31876 -30.46157 -29.68773 -27.37465 -27.27927 -26.64764 -26.31981 -24.29836 -22.73987 -22.33590 -21.74094 -20.79967 -20.49872 -19.35239 -18.10760 -17.40804 -16.69341 -16.44650 -16.18247 -15.62142 -15.40498 -15.29912 -14.89789 -14.15023 -14.13048 -13.88823 -13.84836 -13.71159 -13.57971 -13.37902 -13.11648 -12.98846 -12.70941 -12.38215 -12.28723 -12.09907 -11.86916 -11.70157 -11.47792 -11.44958 -11.23675 -11.06682 -10.99211 -10.91968 -10.76527 -10.52842 -10.34599 -10.18225 -9.99197 -9.85402 -9.66258 -9.40558 -9.30739 -9.14470 -8.62139 -8.48709 -6.63393 -5.80545 -3.29162 1.17562 2.18120 2.48820 2.90178 3.18392 3.36350 3.42018 3.42689 4.18093 4.30998 4.46422 4.48032 4.55304 4.70221 4.73915 4.99494 5.02369 5.11990 5.14311 5.23895 5.34012 5.38353 5.39114 5.43952 5.48469 5.51578 5.54898 5.59873 5.61963 5.65527 5.68598 5.82209 5.82575 5.86859 5.99105 6.03964 6.04993 6.24308 6.25251 6.36639 6.43175 6.54547 6.58291 6.60670 6.64939 6.79239 6.93356 7.32681 7.65539 7.67631 7.76474 7.89271 8.08841 8.46535 9.20728 9.81953 10.39174 11.26953 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020977 B = 0.002474 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.462400 B =11316.613960 C =11854.646109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.150 4.150 4 C 0.117 3.883 5 N -0.253 5.253 6 N -0.281 5.281 7 C -0.007 4.007 8 C -0.195 4.195 9 C -0.026 4.026 10 C 0.607 3.393 11 O -0.543 6.543 12 N -0.624 5.624 13 C 0.124 3.876 14 C -0.073 4.073 15 C 0.098 3.902 16 C -0.108 4.108 17 C 0.147 3.853 18 N -0.590 5.590 19 C -0.253 4.253 20 H 0.063 0.937 21 C 0.005 3.995 22 N -0.905 5.905 23 Si 0.904 3.096 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.170 3.830 28 C -0.128 4.128 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.185 0.815 39 H 0.162 0.838 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.255 0.745 49 H 0.093 0.907 50 H 0.017 0.983 51 H 0.053 0.947 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 -17.869 -8.554 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.208 4.208 4 C -0.003 4.003 5 N -0.041 5.041 6 N -0.113 5.113 7 C -0.183 4.183 8 C -0.224 4.224 9 C -0.154 4.154 10 C 0.396 3.604 11 O -0.422 6.422 12 N -0.357 5.357 13 C 0.002 3.998 14 C -0.074 4.074 15 C -0.025 4.025 16 C -0.148 4.148 17 C 0.020 3.980 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.081 0.919 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.734 3.266 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.044 3.956 28 C -0.167 4.167 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.202 0.798 39 H 0.180 0.820 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.111 0.889 50 H 0.035 0.965 51 H 0.072 0.928 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.039 -18.377 -8.863 22.315 hybrid contribution 1.408 0.965 0.301 1.733 sum -7.630 -17.412 -8.563 20.850 Atomic orbital electron populations 1.21756 0.93569 1.01993 1.02777 1.21417 0.96660 0.97377 0.96930 1.21952 1.00692 0.94993 1.03119 1.22414 0.72943 1.03010 1.01968 1.45750 1.07496 1.16978 1.33844 1.73168 1.07832 1.13658 1.16668 1.23558 0.92340 0.99470 1.02898 1.22517 0.96959 0.98758 1.04190 1.21401 0.90431 0.97729 1.05876 1.16491 0.84227 0.80576 0.79136 1.90731 1.18597 1.69826 1.63060 1.49736 1.06771 1.32849 1.46382 1.23351 0.97529 0.85533 0.93346 1.21989 0.95040 0.92668 0.97695 1.23682 0.78921 0.97824 1.02027 1.21773 1.01071 0.97133 0.94779 1.20889 0.92477 0.92255 0.92338 1.43956 1.41158 1.26501 1.19671 1.19131 1.23047 1.03317 0.92764 0.91946 1.25149 0.99910 0.97978 0.96361 1.69945 1.43017 1.43364 0.98614 0.86350 0.81752 0.81801 0.76693 1.20897 1.21621 1.20990 1.20721 1.00749 0.84691 0.89389 1.22087 0.97413 1.01104 0.96134 0.91908 0.91856 0.92441 0.90717 0.90318 0.93480 0.92774 0.88832 0.86157 0.79846 0.82031 0.89509 0.89638 0.89836 0.89377 0.93011 0.91678 0.96380 0.92655 0.93529 0.88869 0.96454 0.92789 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.10 -1.04 3.12 -90.62 -0.28 -1.32 16 3 C -0.15 -1.77 7.91 37.16 0.29 -1.48 16 4 C 0.12 1.26 5.41 -4.05 -0.02 1.24 16 5 N -0.25 -3.21 3.09 -57.14 -0.18 -3.39 16 6 N -0.28 -3.53 11.90 30.59 0.36 -3.17 16 7 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 8 C -0.20 -2.21 10.07 -38.98 -0.39 -2.60 16 9 C -0.03 -0.34 5.86 -82.06 -0.48 -0.83 16 10 C 0.61 8.90 7.60 -12.64 -0.10 8.80 16 11 O -0.54 -8.92 12.76 5.25 0.07 -8.86 16 12 N -0.62 -8.53 3.44 -181.61 -0.63 -9.15 16 13 C 0.12 1.80 7.63 -3.14 -0.02 1.78 16 14 C -0.07 -1.06 0.77 -154.42 -0.12 -1.18 16 15 C 0.10 1.14 6.17 -3.16 -0.02 1.12 16 16 C -0.11 -1.73 5.22 -26.72 -0.14 -1.87 16 17 C 0.15 2.91 6.38 -3.66 -0.02 2.89 16 18 N -0.59 -13.87 2.96 -172.51 -0.51 -14.39 16 19 C -0.25 -6.64 9.56 -15.06 -0.14 -6.78 16 20 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 21 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16 22 N -0.91 -25.26 10.99 55.49 0.61 -24.65 16 23 Si 0.90 21.06 29.57 -169.99 -5.03 16.03 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 C 0.17 3.71 5.16 -3.91 -0.02 3.69 16 28 C -0.13 -2.09 5.24 -26.97 -0.14 -2.23 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.05 6.32 -51.93 -0.33 0.73 16 34 H 0.05 0.64 6.88 -51.93 -0.36 0.28 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.12 1.43 6.03 -51.93 -0.31 1.12 16 38 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.16 1.50 5.38 -52.48 -0.28 1.22 16 40 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 41 H 0.09 1.37 7.41 -51.93 -0.38 0.99 16 42 H 0.08 0.87 6.52 -51.93 -0.34 0.53 16 43 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 44 H 0.05 0.79 8.01 -51.93 -0.42 0.38 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.37 7.49 -51.93 -0.39 -0.02 16 47 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 48 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 50 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16 51 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 52 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 398.04 15.07 6.00 6.00 Total: -1.00 -30.21 398.04 -9.43 -39.63 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.56 Total: 1.72 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.57 Total: 0.21 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.34 Total: -54.75 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.07 Total: -8.86 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.21 -9.43 -39.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050533997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.336 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds