Wall clock time and date at job start Wed Apr 1 2020 04:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47326 * 2 1 4 4 C 1.53005 * 109.47047 * 239.99623 * 2 1 3 5 5 N 1.46504 * 109.46723 * 120.00024 * 2 1 3 6 6 C 1.35030 * 124.88716 * 75.00485 * 5 2 1 7 7 C 1.35357 * 107.23079 * 179.72384 * 6 5 2 8 8 C 1.41505 * 105.50296 * 0.37309 * 7 6 5 9 9 C 1.47710 * 126.51958 * 179.87850 * 8 7 6 10 10 O 1.21566 * 119.99946 * 359.71677 * 9 8 7 11 11 N 1.34779 * 119.99979 * 179.44349 * 9 8 7 12 12 C 1.47172 * 135.99838 * 359.90234 * 11 9 8 13 13 C 1.52647 * 87.96674 * 206.72557 * 12 11 9 14 14 C 1.47154 * 136.00074 * 180.27930 * 11 9 8 15 15 C 1.52551 * 113.89641 * 88.17696 * 13 12 11 16 16 C 1.53358 * 109.13072 * 190.30289 * 15 13 12 17 17 N 1.46883 * 108.74675 * 307.75495 * 16 15 13 18 18 C 1.36939 * 120.46209 * 235.60053 * 17 16 15 19 19 H 1.07997 * 119.99462 * 149.73120 * 18 17 16 20 20 C 1.38805 * 119.99854 * 329.73033 * 18 17 16 21 21 N 1.31621 * 119.99777 * 158.01178 * 20 18 17 22 22 Si 1.86798 * 120.00471 * 338.00630 * 20 18 17 23 23 H 1.48499 * 109.47107 * 87.66702 * 22 20 18 24 24 H 1.48499 * 109.47465 * 207.67285 * 22 20 18 25 25 H 1.48503 * 109.46729 * 327.66922 * 22 20 18 26 26 C 1.46897 * 119.07293 * 55.62841 * 17 16 15 27 27 C 1.52551 * 114.25793 * 220.76325 * 13 12 11 28 28 N 1.28471 * 124.87903 * 254.97051 * 5 2 1 29 29 H 1.08999 * 109.46941 * 299.99882 * 1 2 3 30 30 H 1.09001 * 109.47036 * 60.00358 * 1 2 3 31 31 H 1.09001 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47352 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46613 * 300.00304 * 3 2 1 34 34 H 1.09004 * 109.46827 * 59.99717 * 3 2 1 35 35 H 1.08996 * 109.47097 * 300.00380 * 4 2 1 36 36 H 1.08995 * 109.46803 * 60.00329 * 4 2 1 37 37 H 1.09000 * 109.47096 * 179.97438 * 4 2 1 38 38 H 1.08002 * 126.38396 * 359.97438 * 6 5 2 39 39 H 1.08003 * 127.25482 * 180.26952 * 7 6 5 40 40 H 1.08997 * 113.48848 * 321.41766 * 12 11 9 41 41 H 1.08997 * 113.48644 * 91.92283 * 12 11 9 42 42 H 1.08995 * 113.48997 * 268.07663 * 14 11 9 43 43 H 1.08996 * 113.48973 * 38.52289 * 14 11 9 44 44 H 1.08996 * 109.53121 * 310.19783 * 15 13 12 45 45 H 1.09001 * 109.53040 * 70.40711 * 15 13 12 46 46 H 1.09005 * 109.58950 * 187.97590 * 16 15 13 47 47 H 1.08997 * 109.58851 * 67.53812 * 16 15 13 48 48 H 0.97006 * 120.00158 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.58974 * 184.58482 * 26 17 16 50 50 H 1.08998 * 109.71554 * 64.21579 * 26 17 16 51 51 H 1.08999 * 109.53278 * 289.75524 * 27 13 12 52 52 H 1.08999 * 109.53302 * 49.89488 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0055 -2.0291 1.3746 7 6 2.5411 -2.2763 2.5928 8 6 2.8636 -1.0071 3.1289 9 6 3.4742 -0.7389 4.4469 10 8 3.7443 -1.6617 5.1907 11 7 3.7368 0.5285 4.8226 12 6 3.5718 1.8647 4.2281 13 6 4.7433 2.3322 5.0877 14 6 4.3205 1.1829 6.0043 15 6 6.1071 2.1363 4.4329 16 6 7.2052 2.3944 5.4719 17 7 6.9661 3.7020 6.0967 18 6 7.9409 4.6637 6.0890 19 1 7.6683 5.7087 6.0781 20 6 9.2792 4.2955 6.0952 21 7 10.1949 5.1357 5.6618 22 14 9.7807 2.6076 6.7188 23 1 9.7225 1.6301 5.6024 24 1 11.1653 2.6681 7.2521 25 1 8.8529 2.1828 7.7976 26 6 5.6669 3.9634 6.7304 27 6 4.5578 3.7169 5.7004 28 7 2.5208 -0.1099 2.2261 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7210 -1.2495 38 1 1.6400 -2.7653 0.6740 39 1 2.6895 -3.2395 3.0585 40 1 3.7811 1.8933 3.1588 41 1 2.6261 2.3412 4.4863 42 1 3.5806 1.4722 6.7506 43 1 5.1604 0.6364 6.4331 44 1 6.1897 1.1149 4.0616 45 1 6.2176 2.8362 3.6046 46 1 8.1789 2.3960 4.9818 47 1 7.1783 1.6150 6.2334 48 1 11.1302 4.8783 5.6658 49 1 5.6274 4.9986 7.0695 50 1 5.5313 3.2949 7.5806 51 1 4.6138 4.4726 4.9168 52 1 3.5856 3.7715 6.1902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050538409.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:38 Heat of formation + Delta-G solvation = 108.902063 kcal Electronic energy + Delta-G solvation = -31681.378058 eV Core-core repulsion = 27684.972288 eV Total energy + Delta-G solvation = -3996.405770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.91171 -40.70996 -38.27702 -37.13011 -36.08970 -32.52448 -31.26182 -31.10619 -30.48632 -30.33254 -28.04568 -27.86897 -27.29373 -26.12354 -24.23324 -23.39798 -22.86256 -21.90962 -20.96566 -19.98625 -19.15091 -18.15069 -17.50711 -16.72398 -16.39578 -16.24555 -15.80166 -15.52511 -15.09137 -14.76803 -14.37849 -14.17106 -14.01283 -13.82846 -13.67614 -13.64183 -13.32839 -13.04614 -12.93177 -12.83640 -12.67671 -12.56240 -12.37658 -12.32241 -12.04212 -11.72681 -11.70288 -11.67893 -11.65107 -11.49915 -10.91198 -10.70284 -10.54157 -10.37740 -10.18122 -9.90315 -9.77729 -9.56402 -9.43965 -9.38209 -9.21712 -8.56238 -8.48264 -6.89291 -5.93659 -3.29481 1.54968 2.01242 2.12892 2.95429 3.37524 3.48770 3.53011 3.57596 3.87080 4.15920 4.26440 4.35552 4.51980 4.53504 4.57559 4.82400 4.88340 4.97294 5.05232 5.06461 5.08953 5.13981 5.21643 5.24187 5.28935 5.39074 5.43320 5.46954 5.49455 5.56756 5.58791 5.62317 5.68287 5.79468 5.84801 5.86489 5.98133 6.02248 6.10139 6.22719 6.32467 6.36914 6.43174 6.53081 6.63024 6.68343 6.73724 6.77557 6.98079 7.75875 7.84619 8.02961 8.29833 8.36979 8.99074 9.75789 10.15262 11.22417 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.002785 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.303189 B =10051.131161 C =10478.246982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.148 4.148 4 C -0.160 4.160 5 N -0.274 5.274 6 C -0.021 4.021 7 C -0.180 4.180 8 C -0.012 4.012 9 C 0.628 3.372 10 O -0.541 6.541 11 N -0.630 5.630 12 C 0.115 3.885 13 C -0.081 4.081 14 C 0.113 3.887 15 C -0.105 4.105 16 C 0.130 3.870 17 N -0.604 5.604 18 C -0.261 4.261 19 H 0.084 0.916 20 C 0.027 3.973 21 N -0.907 5.907 22 Si 0.878 3.122 23 H -0.286 1.286 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.149 3.851 27 C -0.116 4.116 28 N -0.248 5.248 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.177 0.823 39 H 0.160 0.840 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.022 0.978 48 H 0.262 0.738 49 H 0.065 0.935 50 H 0.023 0.977 51 H 0.070 0.930 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.540 -10.769 -14.302 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.086 3.914 3 C -0.206 4.206 4 C -0.218 4.218 5 N -0.064 5.064 6 C -0.164 4.164 7 C -0.208 4.208 8 C -0.172 4.172 9 C 0.417 3.583 10 O -0.416 6.416 11 N -0.363 5.363 12 C -0.008 4.008 13 C -0.082 4.082 14 C -0.009 4.009 15 C -0.144 4.144 16 C 0.004 3.996 17 N -0.328 5.328 18 C -0.389 4.389 19 H 0.101 0.899 20 C -0.172 4.172 21 N -0.549 5.549 22 Si 0.708 3.292 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.197 1.197 26 C 0.023 3.977 27 C -0.156 4.156 28 N -0.084 5.084 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.194 0.806 39 H 0.177 0.823 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.040 0.960 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.041 0.959 51 H 0.088 0.912 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.310 -10.225 -14.284 28.396 hybrid contribution 0.294 -1.999 0.372 2.055 sum -22.016 -12.225 -13.912 28.770 Atomic orbital electron populations 1.22245 0.92264 1.03337 1.03825 1.21051 0.94981 0.94183 0.81205 1.21978 1.02688 0.92296 1.03605 1.22239 1.02714 1.01011 0.95794 1.45858 1.42613 1.04761 1.13122 1.22679 1.07383 0.86440 0.99867 1.21745 1.05355 0.98665 0.95063 1.21847 1.07933 0.91497 0.95946 1.16354 0.77360 0.80863 0.83769 1.90786 1.54022 1.43018 1.53822 1.49367 1.61207 1.04325 1.21436 1.23086 0.98213 0.79635 0.99870 1.21679 0.95381 0.95111 0.95999 1.23111 0.97252 0.91015 0.89474 1.21690 0.93057 1.00419 0.99247 1.21331 0.97270 0.87585 0.93378 1.44325 1.12489 1.12829 1.63138 1.18884 0.84980 0.88638 1.46385 0.89884 1.25334 0.95714 0.97027 0.99151 1.69859 1.01193 1.36695 1.47180 0.87037 0.76886 0.85438 0.79884 1.21343 1.23091 1.19714 1.20925 0.84942 0.99459 0.92412 1.21859 0.99091 0.94482 1.00128 1.73561 1.13318 1.26207 0.95291 0.91351 0.89942 0.91604 0.91175 0.90526 0.90579 0.91379 0.89698 0.91173 0.80607 0.82283 0.89942 0.90164 0.89791 0.90281 0.92770 0.91097 0.90712 0.95966 0.92790 0.91697 0.95929 0.91162 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 8.70 37.16 0.32 -0.45 16 2 C 0.17 1.08 1.21 -131.81 -0.16 0.92 16 3 C -0.15 -1.01 8.01 37.16 0.30 -0.71 16 4 C -0.16 -0.72 8.27 37.16 0.31 -0.41 16 5 N -0.27 -2.68 3.16 -48.62 -0.15 -2.83 16 6 C -0.02 -0.20 10.52 -17.17 -0.18 -0.38 16 7 C -0.18 -2.19 10.81 -39.37 -0.43 -2.61 16 8 C -0.01 -0.18 7.10 -82.76 -0.59 -0.77 16 9 C 0.63 10.77 8.07 -12.39 -0.10 10.67 16 10 O -0.54 -10.84 17.70 5.31 0.09 -10.74 16 11 N -0.63 -9.87 3.46 -186.49 -0.65 -10.51 16 12 C 0.11 1.54 6.92 -8.36 -0.06 1.49 16 13 C -0.08 -1.23 0.83 -155.17 -0.13 -1.36 16 14 C 0.11 1.75 7.56 -8.21 -0.06 1.69 16 15 C -0.10 -1.90 5.25 -26.78 -0.14 -2.04 16 16 C 0.13 2.86 4.14 -3.65 -0.02 2.85 16 17 N -0.60 -14.10 2.68 -172.18 -0.46 -14.56 16 18 C -0.26 -7.20 9.97 -15.06 -0.15 -7.35 16 19 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 20 C 0.03 0.78 5.17 -17.43 -0.09 0.69 16 21 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 22 Si 0.88 22.74 24.56 -169.99 -4.18 18.56 16 23 H -0.29 -7.19 6.44 56.52 0.36 -6.82 16 24 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 25 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.15 2.79 6.42 -3.64 -0.02 2.77 16 27 C -0.12 -1.74 5.31 -26.78 -0.14 -1.88 16 28 N -0.25 -3.17 9.47 33.42 0.32 -2.85 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.61 7.99 -51.93 -0.42 0.19 16 35 H 0.07 0.24 7.27 -51.93 -0.38 -0.14 16 36 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.18 0.94 7.47 -52.49 -0.39 0.55 16 39 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.08 1.11 7.48 -51.93 -0.39 0.73 16 41 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 42 H 0.08 1.13 8.06 -51.93 -0.42 0.72 16 43 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 44 H 0.05 0.97 7.95 -51.93 -0.41 0.56 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.07 1.83 4.66 -51.93 -0.24 1.59 16 47 H 0.02 0.50 6.93 -51.93 -0.36 0.14 16 48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 49 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 52 H 0.06 0.73 8.10 -51.93 -0.42 0.30 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -34.65 405.23 -8.38 -43.03 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.90 Total: -2.28 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.34 Total: 3.10 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.17 Total: -57.78 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.18 Total: 18.56 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.65 -8.38 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050538409.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.931 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds