Wall clock time and date at job start Wed Apr 1 2020 04:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47399 * 2 1 4 4 C 1.53001 * 109.47703 * 239.99647 * 2 1 3 5 5 N 1.46498 * 109.46905 * 295.00309 * 4 2 1 6 6 C 1.34257 * 125.75416 * 124.71266 * 5 4 2 7 7 C 1.38047 * 107.41601 * 179.90185 * 6 5 4 8 8 C 1.47431 * 126.41234 * 180.10147 * 7 6 5 9 9 O 1.21600 * 120.00336 * 0.28507 * 8 7 6 10 10 N 1.34775 * 119.99898 * 180.27907 * 8 7 6 11 11 C 1.47175 * 135.99873 * 359.63074 * 10 8 7 12 12 C 1.52647 * 87.96786 * 206.72397 * 11 10 8 13 13 C 1.47163 * 136.00426 * 180.02562 * 10 8 7 14 14 C 1.52547 * 113.89837 * 88.17554 * 12 11 10 15 15 C 1.53354 * 109.13426 * 190.30299 * 14 12 11 16 16 N 1.46892 * 108.74960 * 307.76238 * 15 14 12 17 17 C 1.36936 * 120.45939 * 235.60651 * 16 15 14 18 18 H 1.07998 * 120.00347 * 28.45325 * 17 16 15 19 19 C 1.38812 * 119.99584 * 208.46395 * 17 16 15 20 20 N 1.31617 * 120.00357 * 17.65295 * 19 17 16 21 21 Si 1.86808 * 120.00083 * 197.65629 * 19 17 16 22 22 H 1.48499 * 109.46727 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47131 * 119.99525 * 21 19 17 24 24 H 1.48494 * 109.46941 * 240.00038 * 21 19 17 25 25 C 1.46896 * 119.07575 * 55.61762 * 16 15 14 26 26 C 1.52564 * 114.25783 * 220.76667 * 12 11 10 27 27 C 1.41285 * 107.17325 * 0.35940 * 7 6 5 28 28 N 1.30455 * 108.02202 * 359.77808 * 27 7 6 29 29 H 1.09003 * 109.46732 * 60.00342 * 1 2 3 30 30 H 1.09007 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47399 * 300.00657 * 1 2 3 32 32 H 1.09003 * 109.46732 * 119.99658 * 2 1 3 33 33 H 1.09008 * 109.47064 * 59.99232 * 3 2 1 34 34 H 1.08997 * 109.47787 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46581 * 299.99990 * 3 2 1 36 36 H 1.08998 * 109.46542 * 54.99786 * 4 2 1 37 37 H 1.08998 * 109.47448 * 175.00098 * 4 2 1 38 38 H 1.08004 * 126.29339 * 0.02562 * 6 5 4 39 39 H 1.08997 * 113.48792 * 321.41710 * 11 10 8 40 40 H 1.09002 * 113.48360 * 91.92397 * 11 10 8 41 41 H 1.09008 * 113.48599 * 268.08216 * 13 10 8 42 42 H 1.09004 * 113.48742 * 38.57952 * 13 10 8 43 43 H 1.08996 * 109.52808 * 310.20046 * 14 12 11 44 44 H 1.09006 * 109.52418 * 70.41118 * 14 12 11 45 45 H 1.09000 * 109.59392 * 187.97974 * 15 14 12 46 46 H 1.09001 * 109.58868 * 67.53396 * 15 14 12 47 47 H 0.97002 * 120.00198 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.59127 * 184.59066 * 25 16 15 49 49 H 1.08999 * 109.58934 * 64.15078 * 25 16 15 50 50 H 1.08996 * 109.52548 * 289.75172 * 26 12 11 51 51 H 1.08995 * 109.52777 * 49.96004 * 26 12 11 52 52 H 1.07995 * 125.99205 * 179.75710 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 -2.1329 -1.1904 6 6 0.9572 -2.7952 -2.1287 7 6 0.8069 -4.0956 -1.6906 8 6 0.1099 -5.1834 -2.4010 9 8 -0.3978 -4.9737 -3.4859 10 7 0.0356 -6.4102 -1.8480 11 6 0.5084 -7.0419 -0.6056 12 6 0.5145 -8.3747 -1.3498 13 6 -0.5479 -7.7076 -2.2247 14 6 1.8226 -8.6707 -2.0766 15 6 1.6272 -9.8890 -2.9871 16 7 1.0627 -10.9873 -2.1916 17 6 1.6924 -12.2022 -2.1403 18 1 2.7636 -12.2610 -2.2646 19 6 0.9538 -13.3583 -1.9288 20 7 -0.3482 -13.3519 -2.1212 21 14 1.8077 -14.9233 -1.3709 22 1 3.2638 -14.6689 -1.2286 23 1 1.2497 -15.3525 -0.0634 24 1 1.5886 -15.9926 -2.3777 25 6 -0.1868 -10.7643 -1.4522 26 6 -0.0042 -9.5524 -0.5303 27 6 1.4408 -4.1875 -0.4313 28 7 1.9394 -3.0167 -0.1441 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.8932 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6055 -0.2618 -2.1369 37 1 3.1264 -0.6444 -1.2950 38 1 0.5856 -2.3862 -3.0567 39 1 1.5015 -6.7117 -0.3011 40 1 -0.2179 -7.0008 0.2061 41 1 -1.5646 -7.8496 -1.8581 42 1 -0.4451 -7.9387 -3.2850 43 1 2.1082 -7.8080 -2.6785 44 1 2.6047 -8.8825 -1.3474 45 1 2.5884 -10.1940 -3.4010 46 1 0.9426 -9.6345 -3.7962 47 1 -0.8644 -14.1597 -1.9730 48 1 -0.4205 -11.6457 -0.8551 49 1 -0.9975 -10.5705 -2.1545 50 1 0.7136 -9.7954 0.2531 51 1 -0.9614 -9.2895 -0.0801 52 1 1.5017 -5.0718 0.1856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050710090.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:48 Heat of formation + Delta-G solvation = 95.452974 kcal Electronic energy + Delta-G solvation = -30691.084822 eV Core-core repulsion = 26694.095856 eV Total energy + Delta-G solvation = -3996.988966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.64102 -40.52986 -38.00746 -36.86054 -35.84142 -32.70045 -32.26504 -30.79234 -30.32684 -29.65406 -27.73005 -27.56829 -26.73351 -25.70352 -24.21572 -22.54492 -22.24858 -21.68032 -20.80614 -20.36193 -19.19697 -18.02252 -17.54440 -16.61609 -16.30264 -15.98172 -15.66472 -15.53751 -14.91109 -14.83828 -14.73847 -14.18680 -13.92637 -13.62947 -13.52666 -13.43723 -13.30800 -13.08025 -12.96016 -12.82918 -12.60757 -12.50520 -12.26044 -11.81050 -11.75665 -11.56433 -11.48177 -11.44524 -11.37754 -11.10356 -10.98239 -10.72238 -10.43669 -10.25953 -10.04985 -9.83149 -9.78693 -9.74949 -9.58311 -9.31610 -8.90509 -8.44919 -8.40084 -6.63642 -5.77299 -3.19579 1.38665 2.04325 2.07669 3.05294 3.38120 3.46563 3.48538 3.53351 3.92662 4.23784 4.38190 4.46598 4.51219 4.58130 4.61146 4.72191 4.83794 4.92356 5.04337 5.10868 5.12876 5.23921 5.29702 5.32060 5.35784 5.39054 5.40494 5.53382 5.55567 5.59936 5.64574 5.70518 5.73080 5.78181 5.97238 6.00867 6.11456 6.14054 6.29218 6.32579 6.49919 6.58009 6.61043 6.66751 6.69699 6.85573 6.99976 7.33819 7.36067 7.67259 7.82167 7.96174 8.38699 8.47780 9.23686 9.87168 10.43634 11.30782 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.001980 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.211930 B =14141.394826 C =14378.824669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.133 3.867 5 N -0.359 5.359 6 C 0.123 3.877 7 C -0.282 4.282 8 C 0.620 3.380 9 O -0.557 6.557 10 N -0.637 5.637 11 C 0.097 3.903 12 C -0.075 4.075 13 C 0.117 3.883 14 C -0.106 4.106 15 C 0.147 3.853 16 N -0.590 5.590 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.171 3.829 26 C -0.124 4.124 27 C 0.078 3.922 28 N -0.296 5.296 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.186 0.814 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.090 0.910 49 H 0.019 0.981 50 H 0.063 0.937 51 H 0.053 0.947 52 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 27.015 5.573 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.204 4.204 4 C 0.013 3.987 5 N -0.137 5.137 6 C -0.028 4.028 7 C -0.297 4.297 8 C 0.411 3.589 9 O -0.437 6.437 10 N -0.371 5.371 11 C -0.026 4.026 12 C -0.076 4.076 13 C -0.005 4.005 14 C -0.145 4.145 15 C 0.020 3.980 16 N -0.313 5.313 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.045 3.955 26 C -0.164 4.164 27 C -0.110 4.110 28 N -0.116 5.116 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.203 0.797 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.063 0.937 48 H 0.108 0.892 49 H 0.037 0.963 50 H 0.081 0.919 51 H 0.072 0.928 52 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.915 28.049 5.752 28.781 hybrid contribution -0.165 -1.264 -0.261 1.301 sum 2.749 26.785 5.490 27.480 Atomic orbital electron populations 1.21840 0.94448 1.02196 1.02099 1.21430 0.96800 0.96468 0.98143 1.21791 1.01291 0.94741 1.02539 1.21984 1.01484 0.75005 1.00258 1.48530 1.41090 1.09835 1.14279 1.22925 0.93214 0.91871 0.94779 1.20202 1.15176 0.94867 0.99469 1.16686 0.78662 0.79489 0.84091 1.90759 1.49628 1.81752 1.21572 1.49359 1.56369 1.08780 1.22556 1.23318 0.99509 0.91276 0.88521 1.21640 0.96649 0.93180 0.96082 1.23053 0.97455 0.78494 1.01475 1.21707 0.94489 0.99122 0.99203 1.20886 0.97250 0.87852 0.91980 1.44032 1.26150 1.08845 1.52261 1.19224 0.90828 0.83324 1.44645 0.91728 1.25034 0.95757 0.97449 1.01422 1.70040 1.05501 1.27680 1.51383 0.86263 0.79062 0.83534 0.78158 1.20292 1.21595 1.21818 1.20790 0.87369 0.94666 0.92702 1.22071 0.99296 0.96219 0.98836 1.24399 0.95050 0.96279 0.95230 1.77149 1.24277 1.00268 1.09889 0.92539 0.92611 0.92156 0.89398 0.91811 0.92194 0.92302 0.88327 0.89263 0.79747 0.90683 0.89744 0.89969 0.90314 0.92923 0.91742 0.92693 0.96358 0.93714 0.89201 0.96325 0.91876 0.92804 0.79195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.08 37.16 0.34 -0.60 16 2 C -0.11 -0.63 3.00 -90.62 -0.27 -0.90 16 3 C -0.15 -0.56 9.19 37.16 0.34 -0.22 16 4 C 0.13 0.79 5.88 -4.04 -0.02 0.77 16 5 N -0.36 -3.42 3.10 -60.81 -0.19 -3.61 16 6 C 0.12 1.32 11.25 -16.56 -0.19 1.13 16 7 C -0.28 -3.66 6.13 -105.07 -0.64 -4.31 16 8 C 0.62 9.84 8.06 -12.52 -0.10 9.74 16 9 O -0.56 -10.67 17.67 5.28 0.09 -10.58 16 10 N -0.64 -9.41 3.46 -186.58 -0.65 -10.06 16 11 C 0.10 1.20 6.22 -8.36 -0.05 1.14 16 12 C -0.07 -1.14 0.83 -155.18 -0.13 -1.27 16 13 C 0.12 1.84 7.56 -8.22 -0.06 1.78 16 14 C -0.11 -1.78 5.25 -26.78 -0.14 -1.92 16 15 C 0.15 3.02 6.41 -3.64 -0.02 2.99 16 16 N -0.59 -14.22 2.96 -172.18 -0.51 -14.73 16 17 C -0.25 -6.71 9.56 -15.06 -0.14 -6.85 16 18 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 19 C 0.00 0.05 4.89 -17.43 -0.09 -0.03 16 20 N -0.90 -25.66 11.21 55.49 0.62 -25.03 16 21 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.17 3.82 5.27 -3.64 -0.02 3.80 16 26 C -0.12 -2.11 5.31 -26.77 -0.14 -2.26 16 27 C 0.08 0.91 11.14 -16.98 -0.19 0.72 16 28 N -0.30 -3.42 12.24 30.86 0.38 -3.04 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.48 7.75 -51.93 -0.40 0.08 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.66 8.04 -51.93 -0.42 0.24 16 33 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.10 0.37 8.06 -51.93 -0.42 -0.05 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.19 1.58 8.06 -52.48 -0.42 1.15 16 39 H 0.07 0.82 6.16 -51.93 -0.32 0.50 16 40 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 41 H 0.08 1.21 8.06 -51.92 -0.42 0.79 16 42 H 0.08 1.38 7.53 -51.93 -0.39 0.98 16 43 H 0.05 0.85 7.95 -51.93 -0.41 0.44 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 46 H 0.02 0.39 7.59 -51.93 -0.39 0.00 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.09 2.29 5.97 -51.93 -0.31 1.98 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 52 H 0.19 1.88 5.23 -52.49 -0.27 1.60 16 LS Contribution 410.58 15.07 6.19 6.19 Total: -1.00 -32.78 410.58 -9.42 -42.20 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.79 Total: -1.37 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.53 Total: 3.71 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.34 Total: -56.47 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.78 -9.42 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050710090.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.650 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds