Wall clock time and date at job start Wed Apr 1 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 H 1.09000 * 110.05488 * 304.09246 * 3 2 1 5 5 C 1.54263 * 110.03301 * 65.51231 * 3 2 1 6 6 C 1.54880 * 104.19946 * 142.89315 * 5 3 2 7 7 C 1.54899 * 102.75000 * 322.05821 * 6 5 3 8 8 C 1.53879 * 110.03145 * 182.67420 * 3 2 1 9 9 H 1.09005 * 110.03017 * 121.42842 * 8 3 2 10 10 C 1.50710 * 110.03100 * 0.02562 * 8 3 2 11 11 O 1.21280 * 119.99440 * 273.01585 * 10 8 3 12 12 N 1.34773 * 120.00039 * 93.02103 * 10 8 3 13 13 C 1.46496 * 119.99645 * 179.97438 * 12 10 8 14 14 C 1.50707 * 109.47137 * 179.97438 * 13 12 10 15 15 C 1.40068 * 126.12601 * 259.69195 * 14 13 12 16 16 N 1.31012 * 108.25517 * 179.85014 * 15 14 13 17 17 N 1.39748 * 108.17497 * 0.60514 * 16 15 14 18 18 C 1.34647 * 126.12231 * 79.99519 * 14 13 12 19 19 C 1.51039 * 127.90890 * 359.66333 * 18 14 13 20 20 N 1.47502 * 106.99925 * 169.52433 * 19 18 14 21 21 C 1.36936 * 121.00863 * 222.89707 * 20 19 18 22 22 H 1.08003 * 119.99558 * 154.45666 * 21 20 19 23 23 C 1.38807 * 120.00133 * 334.45378 * 21 20 19 24 24 N 1.31618 * 120.00425 * 348.52703 * 23 21 20 25 25 Si 1.86805 * 119.99963 * 168.52426 * 23 21 20 26 26 H 1.48498 * 109.47178 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46871 * 120.00175 * 25 23 21 28 28 H 1.48498 * 109.47358 * 240.00088 * 25 23 21 29 29 C 1.47086 * 117.97997 * 42.91959 * 20 19 18 30 30 C 1.46551 * 127.32663 * 179.18523 * 17 16 15 31 31 H 1.08998 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46849 * 299.99838 * 1 2 3 33 33 H 1.09000 * 109.46805 * 60.00074 * 1 2 3 34 34 H 1.08994 * 109.47605 * 239.99982 * 2 1 3 35 35 H 1.08998 * 109.47184 * 119.99547 * 2 1 3 36 36 H 1.09002 * 110.48423 * 261.57359 * 5 3 2 37 37 H 1.09008 * 110.48903 * 24.21085 * 5 3 2 38 38 H 1.09000 * 110.75551 * 80.36937 * 6 5 3 39 39 H 1.08996 * 110.75936 * 203.56146 * 6 5 3 40 40 H 1.08992 * 110.48929 * 156.61876 * 7 6 5 41 41 H 1.09006 * 110.48128 * 279.12954 * 7 6 5 42 42 H 0.96998 * 119.99915 * 359.97438 * 12 10 8 43 43 H 1.09003 * 109.47187 * 299.99585 * 13 12 10 44 44 H 1.08996 * 109.47255 * 59.99960 * 13 12 10 45 45 H 1.07999 * 125.87538 * 0.03505 * 15 14 13 46 46 H 1.09007 * 109.94350 * 288.89007 * 19 18 14 47 47 H 1.09000 * 109.94963 * 50.14956 * 19 18 14 48 48 H 0.96994 * 120.00624 * 180.02562 * 24 23 21 49 49 H 1.09005 * 109.51459 * 56.34007 * 29 20 19 50 50 H 1.08997 * 109.51376 * 176.49875 * 29 20 19 51 51 H 1.09001 * 109.50639 * 41.59380 * 30 17 16 52 52 H 1.09001 * 109.54956 * 281.48780 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6235 1.9863 -0.8479 5 6 1.6497 2.1410 1.3189 6 6 2.8661 3.0423 1.6459 7 6 4.0674 2.1656 1.2127 8 6 3.5772 1.4582 -0.0675 9 1 3.9067 2.0095 -0.9482 10 6 4.1063 0.0477 -0.1133 11 8 4.3136 -0.5559 0.9179 12 7 4.3491 -0.5426 -1.3003 13 6 4.8639 -1.9134 -1.3448 14 6 5.0472 -2.3349 -2.7801 15 6 4.1722 -3.1375 -3.5232 16 7 4.6689 -3.2804 -4.7271 17 7 5.8803 -2.5860 -4.7841 18 6 6.0842 -2.0120 -3.5759 19 6 7.2858 -1.1626 -3.2356 20 7 8.2491 -1.3152 -4.3421 21 6 9.5864 -1.4770 -4.0960 22 1 10.2110 -1.9827 -4.8175 23 6 10.1393 -0.9909 -2.9192 24 7 9.4414 -0.1842 -2.1481 25 14 11.8740 -1.4817 -2.4298 26 1 12.4406 -2.3898 -3.4592 27 1 12.7206 -0.2664 -2.3225 28 1 11.8401 -2.1787 -1.1189 29 6 7.7297 -1.2879 -5.7179 30 6 6.7920 -2.4820 -5.9268 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.7535 2.7456 1.1798 37 1 1.4962 1.4059 2.1091 38 1 2.8313 3.9639 1.0650 39 1 2.9090 3.2612 2.7128 40 1 4.9355 2.7880 0.9961 41 1 4.3059 1.4360 1.9867 42 1 4.1830 -0.0599 -2.1251 43 1 5.8222 -1.9587 -0.8273 44 1 4.1557 -2.5835 -0.8574 45 1 3.2459 -3.5627 -3.1663 46 1 6.9885 -0.1180 -3.1428 47 1 7.7329 -1.5074 -2.3031 48 1 9.8279 0.1557 -1.3260 49 1 7.1804 -0.3607 -5.8814 50 1 8.5597 -1.3492 -6.4218 51 1 6.2154 -2.3366 -6.8404 52 1 7.3797 -3.3963 -6.0090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069872302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:57 Heat of formation + Delta-G solvation = 43.385805 kcal Electronic energy + Delta-G solvation = -31683.799606 eV Core-core repulsion = 27684.552838 eV Total energy + Delta-G solvation = -3999.246768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.00364 -40.22884 -37.42177 -36.30594 -34.69562 -33.20602 -32.96705 -31.34270 -30.23350 -29.74426 -28.39294 -27.62615 -26.04481 -24.80660 -23.50890 -22.92507 -21.83311 -21.34030 -20.57765 -20.14791 -19.11436 -18.29897 -16.78163 -16.73185 -16.35151 -15.80639 -15.60009 -15.15915 -14.87008 -14.68678 -14.50226 -14.28023 -13.87549 -13.62842 -13.48113 -13.34232 -13.30684 -13.15493 -12.83295 -12.45731 -12.36144 -12.04831 -11.71665 -11.60593 -11.54816 -11.34250 -11.27446 -11.07498 -11.01481 -10.89696 -10.87205 -10.73146 -10.67037 -10.56203 -10.47302 -10.19099 -10.16288 -10.10073 -9.50287 -8.93038 -8.65606 -8.54959 -7.91118 -7.07381 -6.02060 -3.47571 2.42868 2.94072 2.97725 3.02674 3.27883 3.35760 3.37361 3.81178 4.30095 4.43353 4.52279 4.63691 4.95822 5.06098 5.07153 5.11731 5.20294 5.20952 5.25521 5.37976 5.45822 5.47880 5.49903 5.54536 5.57155 5.58108 5.61363 5.64094 5.72444 5.74876 5.83446 5.87083 5.95462 5.98645 6.04934 6.14337 6.16513 6.21916 6.22235 6.35448 6.37925 6.39291 6.40821 6.56320 6.79912 6.92669 7.09354 7.17052 7.56944 7.60788 7.87801 8.09588 8.23784 8.56702 8.91713 9.52957 10.06038 11.08632 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.003371 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.306293 B = 8303.676499 C =10146.982273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.112 4.112 9 H 0.089 0.911 10 C 0.526 3.474 11 O -0.547 6.547 12 N -0.720 5.720 13 C 0.210 3.790 14 C -0.288 4.288 15 C 0.056 3.944 16 N -0.319 5.319 17 N -0.358 5.358 18 C 0.119 3.881 19 C 0.232 3.768 20 N -0.597 5.597 21 C -0.263 4.263 22 H 0.073 0.927 23 C 0.009 3.991 24 N -0.905 5.905 25 Si 0.910 3.090 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.286 1.286 29 C 0.129 3.871 30 C 0.114 3.886 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.398 0.602 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.174 0.826 46 H 0.056 0.944 47 H 0.111 0.889 48 H 0.259 0.741 49 H 0.036 0.964 50 H 0.084 0.916 51 H 0.079 0.921 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.155 4.034 1.716 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.133 4.133 9 H 0.107 0.893 10 C 0.312 3.688 11 O -0.425 6.425 12 N -0.370 5.370 13 C 0.086 3.914 14 C -0.300 4.300 15 C -0.131 4.131 16 N -0.139 5.139 17 N -0.140 5.140 18 C -0.013 4.013 19 C 0.105 3.895 20 N -0.320 5.320 21 C -0.392 4.392 22 H 0.091 0.909 23 C -0.190 4.190 24 N -0.548 5.548 25 Si 0.739 3.261 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.213 1.213 29 C 0.001 3.999 30 C -0.010 4.010 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.232 0.768 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.191 0.809 46 H 0.073 0.927 47 H 0.129 0.871 48 H 0.069 0.931 49 H 0.054 0.946 50 H 0.103 0.897 51 H 0.098 0.902 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.968 3.123 1.285 15.345 hybrid contribution 0.905 0.242 0.432 1.032 sum -14.064 3.365 1.717 14.562 Atomic orbital electron populations 1.21752 0.95854 1.01436 1.01501 1.21852 0.95953 0.95925 1.03177 1.21702 0.92396 0.96655 0.98654 0.90509 1.22437 0.97688 0.98385 0.96895 1.22481 0.94739 0.97939 1.00961 1.22349 0.97663 0.98658 0.96405 1.22033 0.96435 0.93854 1.01006 0.89288 1.20321 0.76730 0.88219 0.83501 1.90656 1.52804 1.65703 1.33300 1.46294 1.66359 1.16186 1.08182 1.19281 0.99197 0.81587 0.91305 1.19444 0.99304 1.13194 0.98035 1.23658 0.99628 0.98710 0.91095 1.77165 0.96740 1.19188 1.20786 1.48491 1.16034 1.38681 1.10745 1.22621 0.97981 0.95077 0.85587 1.19949 0.81928 0.94163 0.93470 1.44200 1.04081 1.85085 0.98603 1.19209 0.83431 1.31483 1.05049 0.90892 1.25086 0.98324 0.96775 0.98863 1.69901 1.37313 1.32939 1.14678 0.86109 0.83592 0.77931 0.78440 1.20187 1.21400 1.21257 1.21275 0.95660 0.93343 0.89656 1.22539 0.90253 1.02492 0.85718 0.92939 0.92773 0.92990 0.91476 0.90816 0.91792 0.91250 0.91630 0.91484 0.91331 0.89562 0.76812 0.90971 0.91570 0.80858 0.92660 0.87116 0.93065 0.94636 0.89746 0.90242 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.74 37.16 0.36 -0.95 16 2 C -0.13 -1.42 4.11 -26.73 -0.11 -1.53 16 3 C -0.08 -0.75 2.96 -89.50 -0.26 -1.02 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.12 -1.07 5.42 -25.08 -0.14 -1.20 16 6 C -0.12 -1.15 6.91 -24.74 -0.17 -1.32 16 7 C -0.11 -1.33 6.31 -25.07 -0.16 -1.49 16 8 C -0.11 -1.32 3.29 -90.65 -0.30 -1.62 16 9 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 10 C 0.53 7.84 4.71 -10.98 -0.05 7.79 16 11 O -0.55 -9.99 14.98 5.56 0.08 -9.91 16 12 N -0.72 -10.39 5.01 -61.47 -0.31 -10.70 16 13 C 0.21 3.38 5.95 -5.19 -0.03 3.35 16 14 C -0.29 -4.96 5.46 -105.20 -0.57 -5.53 16 15 C 0.06 0.91 11.97 -17.22 -0.21 0.70 16 16 N -0.32 -5.87 12.61 30.70 0.39 -5.49 16 17 N -0.36 -6.85 4.03 -56.93 -0.23 -7.08 16 18 C 0.12 2.34 6.71 -82.16 -0.55 1.79 16 19 C 0.23 5.19 5.08 -4.48 -0.02 5.17 16 20 N -0.60 -13.82 3.01 -172.96 -0.52 -14.34 16 21 C -0.26 -6.69 9.67 -15.06 -0.15 -6.84 16 22 H 0.07 1.81 7.86 -52.48 -0.41 1.40 16 23 C 0.01 0.23 5.09 -17.43 -0.09 0.14 16 24 N -0.90 -24.46 10.93 55.49 0.61 -23.85 16 25 Si 0.91 20.75 29.57 -169.99 -5.03 15.72 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 29 C 0.13 2.39 6.49 -3.59 -0.02 2.37 16 30 C 0.11 1.93 7.44 -3.88 -0.03 1.90 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.45 7.43 -51.93 -0.39 0.06 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.77 6.95 -51.93 -0.36 0.41 16 35 H 0.07 0.96 7.04 -51.93 -0.37 0.59 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.69 7.80 -51.92 -0.40 0.28 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 1.20 6.89 -51.93 -0.36 0.84 16 42 H 0.40 5.26 8.46 -40.82 -0.35 4.92 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 46 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.11 2.82 6.44 -51.93 -0.33 2.48 16 48 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 51 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 52 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 405.93 15.07 6.12 6.12 Total: -1.00 -29.73 405.93 -10.25 -39.98 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.86 Total: 7.84 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.50 Total: 1.70 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.06 Total: -61.45 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.73 -10.25 -39.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069872302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.363 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds