Wall clock time and date at job start Wed Apr 1 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47172 * 2 1 4 4 H 1.09006 * 110.81667 * 51.66178 * 3 2 1 5 5 C 1.54892 * 110.75663 * 288.32872 * 3 2 1 6 6 C 1.54262 * 104.19609 * 203.74042 * 5 3 2 7 7 C 1.53881 * 106.59828 * 23.61019 * 6 5 3 8 8 C 1.54267 * 106.59916 * 359.97438 * 7 6 5 9 9 H 1.09003 * 110.48469 * 95.20093 * 8 7 6 10 10 C 1.50698 * 110.48546 * 217.71342 * 8 7 6 11 11 O 1.21276 * 120.00041 * 118.55109 * 10 8 7 12 12 N 1.34778 * 119.99967 * 298.54663 * 10 8 7 13 13 C 1.46503 * 120.00009 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.46871 * 179.97438 * 13 12 10 15 15 C 1.40078 * 126.12467 * 259.97467 * 14 13 12 16 16 N 1.31014 * 108.25545 * 180.08278 * 15 14 13 17 17 N 1.39751 * 108.17506 * 0.16571 * 16 15 14 18 18 C 1.34634 * 126.12662 * 80.00354 * 14 13 12 19 19 C 1.51046 * 127.91107 * 359.65366 * 18 14 13 20 20 N 1.47496 * 106.99920 * 169.40699 * 19 18 14 21 21 C 1.36940 * 121.01063 * 222.95029 * 20 19 18 22 22 H 1.07997 * 119.99643 * 28.23767 * 21 20 19 23 23 C 1.38810 * 119.99617 * 208.23190 * 21 20 19 24 24 N 1.31623 * 119.99476 * 203.11587 * 23 21 20 25 25 Si 1.86799 * 120.00431 * 23.11720 * 23 21 20 26 26 H 1.48494 * 109.46980 * 264.83181 * 25 23 21 27 27 H 1.48495 * 109.46935 * 24.83118 * 25 23 21 28 28 H 1.48503 * 109.47112 * 144.83098 * 25 23 21 29 29 C 1.47088 * 117.97735 * 43.21999 * 20 19 18 30 30 C 1.46548 * 127.31956 * 179.37666 * 17 16 15 31 31 H 1.08993 * 109.46993 * 60.00434 * 1 2 3 32 32 H 1.09004 * 109.46615 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47142 * 299.99467 * 1 2 3 34 34 H 1.09001 * 109.47654 * 240.00005 * 2 1 3 35 35 H 1.09004 * 109.47374 * 119.99853 * 2 1 3 36 36 H 1.09007 * 110.48478 * 85.05921 * 5 3 2 37 37 H 1.09001 * 110.48480 * 322.41823 * 5 3 2 38 38 H 1.09003 * 110.03558 * 264.32355 * 6 5 3 39 39 H 1.09005 * 110.07269 * 142.91482 * 6 5 3 40 40 H 1.09002 * 110.02677 * 240.71278 * 7 6 5 41 41 H 1.08994 * 110.03239 * 119.28403 * 7 6 5 42 42 H 0.97001 * 119.99735 * 359.97438 * 12 10 8 43 43 H 1.09002 * 109.46970 * 59.99943 * 13 12 10 44 44 H 1.08992 * 109.46760 * 299.99808 * 13 12 10 45 45 H 1.07998 * 125.87198 * 0.07956 * 15 14 13 46 46 H 1.08994 * 109.94322 * 50.03405 * 19 18 14 47 47 H 1.09000 * 109.94470 * 288.77764 * 19 18 14 48 48 H 0.97006 * 119.99747 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.51132 * 56.07251 * 29 20 19 50 50 H 1.08996 * 109.51823 * 176.22668 * 29 20 19 51 51 H 1.09003 * 109.50979 * 281.52639 * 30 17 16 52 52 H 1.08996 * 109.50891 * 41.62331 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5732 2.0184 0.7992 5 6 1.7936 2.1119 -1.3749 6 6 2.8428 3.2409 -1.4395 7 6 3.9808 2.8386 -0.4850 8 6 3.5830 1.4794 0.1268 9 1 4.0331 0.6614 -0.4359 10 6 3.9956 1.4117 1.5746 11 8 3.1561 1.2717 2.4385 12 7 5.2977 1.5068 1.9093 13 6 5.6989 1.4404 3.3168 14 6 7.1969 1.5699 3.4187 15 6 8.1069 0.5187 3.5896 16 7 9.3146 1.0247 3.6348 17 7 9.2115 2.4117 3.4983 18 6 7.9002 2.7165 3.3624 19 6 7.3734 4.1204 3.1803 20 7 8.4966 5.0398 3.4422 21 6 8.3197 6.1758 4.1861 22 1 7.5527 6.2098 4.9456 23 6 9.1264 7.2834 3.9641 24 7 9.2933 8.1772 4.9157 25 14 9.9751 7.5053 2.3149 26 1 11.3552 6.9626 2.3914 27 1 9.2152 6.7796 1.2656 28 1 10.0295 8.9503 1.9767 29 6 9.8111 4.7025 2.8748 30 6 10.3039 3.3886 3.5038 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.7857 2.5244 -1.4232 37 1 1.9530 1.3963 -2.1816 38 1 2.3989 4.1822 -1.1155 39 1 3.2248 3.3388 -2.4557 40 1 4.0890 3.5847 0.3022 41 1 4.9148 2.7404 -1.0381 42 1 5.9692 1.6183 1.2183 43 1 5.3876 0.4848 3.7387 44 1 5.2253 2.2526 3.8682 45 1 7.8561 -0.5286 3.6702 46 1 6.5657 4.3090 3.8874 47 1 7.0142 4.2533 2.1598 48 1 9.8568 8.9515 4.7605 49 1 9.7214 4.5811 1.7953 50 1 10.5185 5.5021 3.0945 51 1 10.6237 3.5712 4.5297 52 1 11.1419 3.0008 2.9247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069872304.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:07 Heat of formation + Delta-G solvation = 46.927062 kcal Electronic energy + Delta-G solvation = -31185.854751 eV Core-core repulsion = 27186.761543 eV Total energy + Delta-G solvation = -3999.093208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.25223 -40.18293 -37.73574 -36.67684 -34.95326 -33.40324 -32.80991 -32.01132 -30.53117 -29.99980 -28.71710 -27.78726 -26.22621 -25.20440 -23.53162 -22.98544 -22.14853 -21.54370 -20.35367 -20.16118 -19.73397 -18.71108 -17.43509 -16.93673 -16.07254 -15.88017 -15.72042 -15.60432 -15.17312 -14.83286 -14.67512 -14.47404 -14.14741 -13.88830 -13.60478 -13.53582 -13.37780 -13.19636 -13.07170 -12.80730 -12.64662 -12.43401 -12.19862 -12.06027 -11.88230 -11.66358 -11.53119 -11.49976 -11.27899 -11.04469 -10.84064 -10.75463 -10.66124 -10.59638 -10.54455 -10.40768 -10.19755 -9.78797 -9.73647 -8.94186 -8.90514 -8.88240 -8.19573 -7.37043 -6.18834 -3.58548 2.16413 2.71757 2.73927 2.79945 3.09808 3.30734 3.32430 3.56595 4.23410 4.28270 4.37698 4.53292 4.54278 4.74853 4.92725 4.95798 4.99506 5.07401 5.10091 5.18162 5.19393 5.28162 5.34421 5.34577 5.39314 5.43156 5.44777 5.53153 5.59085 5.60482 5.68290 5.72297 5.78704 5.86287 5.90923 5.95173 5.97718 6.00642 6.02696 6.08623 6.11222 6.17968 6.18766 6.31608 6.32279 6.39411 6.53967 6.86652 7.29560 7.60219 7.62232 7.99592 8.09275 8.31094 8.62005 9.42802 9.74935 10.96020 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012104 B = 0.002918 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.770723 B = 9593.243596 C =10977.459239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.071 4.071 4 H 0.089 0.911 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.112 4.112 9 H 0.098 0.902 10 C 0.518 3.482 11 O -0.542 6.542 12 N -0.723 5.723 13 C 0.208 3.792 14 C -0.281 4.281 15 C 0.056 3.944 16 N -0.308 5.308 17 N -0.350 5.350 18 C 0.117 3.883 19 C 0.200 3.800 20 N -0.605 5.605 21 C -0.271 4.271 22 H 0.091 0.909 23 C 0.032 3.968 24 N -0.893 5.893 25 Si 0.873 3.127 26 H -0.285 1.285 27 H -0.268 1.268 28 H -0.296 1.296 29 C 0.114 3.886 30 C 0.112 3.888 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.399 0.601 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.178 0.822 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.267 0.733 49 H 0.043 0.957 50 H 0.096 0.904 51 H 0.086 0.914 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.068 -14.614 -12.922 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.090 4.090 4 H 0.107 0.893 5 C -0.158 4.158 6 C -0.161 4.161 7 C -0.155 4.155 8 C -0.133 4.133 9 H 0.116 0.884 10 C 0.304 3.696 11 O -0.419 6.419 12 N -0.374 5.374 13 C 0.084 3.916 14 C -0.293 4.293 15 C -0.130 4.130 16 N -0.128 5.128 17 N -0.131 5.131 18 C -0.015 4.015 19 C 0.073 3.927 20 N -0.329 5.329 21 C -0.399 4.399 22 H 0.108 0.892 23 C -0.169 4.169 24 N -0.534 5.534 25 Si 0.702 3.298 26 H -0.213 1.213 27 H -0.193 1.193 28 H -0.224 1.224 29 C -0.013 4.013 30 C -0.011 4.011 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.195 0.805 46 H 0.109 0.891 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.114 0.886 51 H 0.104 0.896 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.201 -14.659 -12.063 21.097 hybrid contribution 0.351 0.429 -1.212 1.333 sum -8.850 -14.230 -13.275 21.379 Atomic orbital electron populations 1.21742 0.95867 1.01293 1.01787 1.21493 0.95979 0.95880 1.01812 1.22011 0.92472 0.96761 0.97712 0.89280 1.22458 0.98958 0.97404 0.96957 1.22107 0.95808 0.98869 0.99327 1.22128 0.98912 0.95393 0.99060 1.22258 0.98195 0.99793 0.93087 0.88395 1.20524 0.82250 0.75863 0.90942 1.90685 1.50801 1.49198 1.51246 1.46297 1.07628 1.74138 1.09358 1.19322 0.88675 1.02025 0.81568 1.19426 0.95628 0.91910 1.22329 1.23707 0.89705 0.99495 1.00125 1.77251 1.22357 0.88294 1.24926 1.48562 1.05836 1.04495 1.54203 1.21784 0.84983 0.97941 0.96780 1.19983 0.91248 0.81415 1.00012 1.44476 1.02278 1.24683 1.61424 1.18844 1.20539 0.88392 1.12110 0.89158 1.25284 0.98459 0.95819 0.97321 1.69856 1.38968 1.13438 1.31168 0.87061 0.78875 0.76963 0.86873 1.21342 1.19312 1.22386 1.21888 0.89766 0.93677 0.95975 1.22689 0.87209 0.87640 1.03541 0.92903 0.93086 0.92573 0.92409 0.91529 0.91482 0.91586 0.91554 0.91693 0.90949 0.91105 0.76683 0.91127 0.91044 0.80524 0.89080 0.92851 0.92338 0.93911 0.88577 0.89603 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.81 37.16 0.36 -0.83 16 2 C -0.11 -1.01 5.43 -26.73 -0.15 -1.15 16 3 C -0.07 -0.66 1.88 -88.64 -0.17 -0.83 16 4 H 0.09 1.03 7.53 -51.93 -0.39 0.64 16 5 C -0.12 -0.92 5.70 -25.07 -0.14 -1.06 16 6 C -0.12 -0.98 6.80 -25.61 -0.17 -1.16 16 7 C -0.12 -1.03 6.30 -25.61 -0.16 -1.19 16 8 C -0.11 -1.05 2.70 -90.13 -0.24 -1.29 16 9 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 10 C 0.52 6.36 7.01 -10.99 -0.08 6.28 16 11 O -0.54 -8.55 15.59 5.56 0.09 -8.46 16 12 N -0.72 -8.33 5.49 -61.47 -0.34 -8.67 16 13 C 0.21 2.71 5.95 -5.19 -0.03 2.68 16 14 C -0.28 -4.11 5.46 -105.21 -0.57 -4.68 16 15 C 0.06 0.81 11.97 -17.21 -0.21 0.61 16 16 N -0.31 -5.28 12.61 30.70 0.39 -4.90 16 17 N -0.35 -6.28 4.03 -56.66 -0.23 -6.51 16 18 C 0.12 2.00 6.71 -82.16 -0.55 1.45 16 19 C 0.20 3.67 6.66 -4.48 -0.03 3.64 16 20 N -0.61 -13.23 2.74 -172.65 -0.47 -13.70 16 21 C -0.27 -7.05 10.09 -15.06 -0.15 -7.20 16 22 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 23 C 0.03 0.85 5.23 -17.43 -0.09 0.76 16 24 N -0.89 -25.76 13.97 55.49 0.78 -24.98 16 25 Si 0.87 20.21 24.60 -169.99 -4.18 16.03 16 26 H -0.29 -6.28 6.65 56.52 0.38 -5.90 16 27 H -0.27 -6.05 6.96 56.52 0.39 -5.65 16 28 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 29 C 0.11 2.24 4.39 -3.32 -0.01 2.23 16 30 C 0.11 1.96 7.46 -3.61 -0.03 1.93 16 31 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.44 7.99 -51.93 -0.41 0.03 16 35 H 0.07 0.70 7.97 -51.93 -0.41 0.28 16 36 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.07 0.45 7.93 -51.93 -0.41 0.04 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.40 4.10 8.45 -40.82 -0.34 3.75 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 46 H 0.09 1.68 8.01 -51.93 -0.42 1.26 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.04 0.79 7.86 -51.93 -0.41 0.38 16 50 H 0.10 2.02 3.93 -51.93 -0.20 1.82 16 51 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 52 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 406.41 15.07 6.12 6.12 Total: -1.00 -30.66 406.41 -9.16 -39.81 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.89 Total: 5.07 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.42 Total: 0.18 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.12 Total: -58.76 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.18 Total: 16.03 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.66 -9.16 -39.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069872304.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.741 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds