Wall clock time and date at job start Wed Apr 1 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.09007 * 110.53690 * 307.61474 * 3 2 1 5 5 C 1.54885 * 110.48595 * 70.22506 * 3 2 1 6 6 C 1.54892 * 102.75009 * 156.61963 * 5 3 2 7 7 C 1.54272 * 104.19196 * 322.06168 * 6 5 3 8 8 C 1.53869 * 106.60081 * 23.60674 * 7 6 5 9 9 H 1.08995 * 110.03428 * 240.71110 * 8 7 6 10 10 C 1.50708 * 110.03250 * 119.28407 * 8 7 6 11 11 O 1.21275 * 119.99775 * 242.83124 * 10 8 7 12 12 N 1.34770 * 119.99486 * 62.83418 * 10 8 7 13 13 C 1.46504 * 119.99500 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.47119 * 179.97438 * 13 12 10 15 15 C 1.40074 * 126.12732 * 259.68881 * 14 13 12 16 16 N 1.31011 * 108.25516 * 179.97438 * 15 14 13 17 17 N 1.39744 * 108.17691 * 0.53315 * 16 15 14 18 18 C 1.34646 * 126.12647 * 79.99961 * 14 13 12 19 19 C 1.51037 * 127.90420 * 359.44722 * 18 14 13 20 20 N 1.47509 * 106.99579 * 169.56614 * 19 18 14 21 21 C 1.36936 * 121.01234 * 222.97015 * 20 19 18 22 22 H 1.07997 * 119.99683 * 155.89165 * 21 20 19 23 23 C 1.38812 * 120.00014 * 335.90027 * 21 20 19 24 24 N 1.31622 * 120.00043 * 344.44670 * 23 21 20 25 25 Si 1.86794 * 119.99835 * 164.45470 * 23 21 20 26 26 H 1.48498 * 109.47432 * 59.99526 * 25 23 21 27 27 H 1.48505 * 109.47397 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47302 * 299.99392 * 25 23 21 29 29 C 1.47084 * 117.97413 * 42.97784 * 20 19 18 30 30 C 1.46561 * 127.32644 * 179.23722 * 17 16 15 31 31 H 1.08998 * 109.47221 * 59.99994 * 1 2 3 32 32 H 1.09002 * 109.46934 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46391 * 299.99788 * 1 2 3 34 34 H 1.09001 * 109.46391 * 240.00212 * 2 1 3 35 35 H 1.08998 * 109.47221 * 120.00006 * 2 1 3 36 36 H 1.09003 * 110.76251 * 274.93816 * 5 3 2 37 37 H 1.09006 * 110.75612 * 38.30585 * 5 3 2 38 38 H 1.08992 * 110.48755 * 203.38357 * 6 5 3 39 39 H 1.08995 * 110.48340 * 80.73604 * 6 5 3 40 40 H 1.09002 * 110.02973 * 264.32013 * 7 6 5 41 41 H 1.09000 * 110.03032 * 142.89191 * 7 6 5 42 42 H 0.97000 * 120.00851 * 0.02562 * 12 10 8 43 43 H 1.08999 * 109.47385 * 299.99891 * 13 12 10 44 44 H 1.09005 * 109.47457 * 60.00029 * 13 12 10 45 45 H 1.08002 * 125.87234 * 0.09526 * 15 14 13 46 46 H 1.08996 * 109.94981 * 288.93907 * 19 18 14 47 47 H 1.09005 * 109.95255 * 50.19611 * 19 18 14 48 48 H 0.96998 * 119.99479 * 180.02562 * 24 23 21 49 49 H 1.08992 * 109.51042 * 176.52138 * 29 20 19 50 50 H 1.08997 * 109.51459 * 56.36911 * 29 20 19 51 51 H 1.08995 * 109.50242 * 281.39812 * 30 17 16 52 52 H 1.09002 * 109.50707 * 41.48703 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0107 -0.8086 5 6 1.7580 2.1172 1.3653 6 6 2.8154 3.2480 1.4128 7 6 4.0703 2.6196 0.7722 8 6 3.5773 1.4716 -0.1260 9 1 3.9978 0.5251 0.2133 10 6 3.9732 1.7295 -1.5571 11 8 3.1190 1.8776 -2.4052 12 7 5.2763 1.7954 -1.8943 13 6 5.6611 2.0455 -3.2856 14 6 7.1640 2.0721 -3.3941 15 6 7.9673 3.2179 -3.4569 16 7 9.2180 2.8379 -3.5449 17 7 9.2496 1.4409 -3.5533 18 6 7.9747 0.9987 -3.4539 19 6 7.5866 -0.4604 -3.4161 20 7 8.7917 -1.2362 -3.7652 21 6 8.7207 -2.3030 -4.6208 22 1 9.5974 -2.6147 -5.1690 23 6 7.5218 -2.9836 -4.7835 24 7 6.5476 -2.8176 -3.9143 25 14 7.2914 -4.1352 -6.2361 26 1 8.3112 -5.2132 -6.1798 27 1 5.9341 -4.7353 -6.1817 28 1 7.4459 -3.3733 -7.5013 29 6 10.0718 -0.8292 -3.1661 30 6 10.4309 0.5793 -3.6542 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8900 36 1 0.7495 2.5300 1.3913 37 1 1.9091 1.4124 2.1831 38 1 3.0179 3.5379 2.4438 39 1 2.4807 4.1078 0.8325 40 1 4.7300 2.2301 1.5476 41 1 4.5958 3.3632 0.1731 42 1 5.9595 1.6766 -1.2160 43 1 5.2647 1.2530 -3.9203 44 1 5.2570 3.0053 -3.6075 45 1 7.6161 4.2390 -3.4344 46 1 7.2480 -0.7294 -2.4156 47 1 6.7966 -0.6541 -4.1417 48 1 5.7100 -3.2935 -4.0279 49 1 10.8527 -1.5279 -3.4661 50 1 9.9813 -0.8277 -2.0799 51 1 10.7605 0.5338 -4.6922 52 1 11.2313 0.9851 -3.0356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069872305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:12 Heat of formation + Delta-G solvation = 40.056901 kcal Electronic energy + Delta-G solvation = -31408.525518 eV Core-core repulsion = 27409.134398 eV Total energy + Delta-G solvation = -3999.391120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.00423 -40.03307 -37.53157 -36.31202 -34.72392 -33.27719 -32.92496 -31.33721 -30.24235 -29.74690 -28.38909 -27.62760 -26.04286 -24.82195 -23.53597 -22.86562 -21.79041 -21.37727 -20.21929 -20.15937 -19.35874 -18.40815 -17.13296 -16.73398 -16.03575 -15.81044 -15.54832 -15.21462 -14.79402 -14.63975 -14.42996 -14.24477 -13.88098 -13.61699 -13.51751 -13.31416 -13.18592 -13.11564 -13.08469 -12.54233 -12.45626 -12.01158 -11.71874 -11.69019 -11.59404 -11.35496 -11.29042 -11.09027 -10.99135 -10.87785 -10.81209 -10.75548 -10.63162 -10.55679 -10.38460 -10.22324 -10.17890 -10.09457 -9.51873 -8.91427 -8.68502 -8.55830 -7.92393 -7.09756 -6.02547 -3.45361 2.41705 2.94027 2.96605 3.01493 3.28735 3.36420 3.36593 3.79279 4.30712 4.39228 4.51179 4.71075 4.94880 5.05170 5.07587 5.15791 5.19924 5.21015 5.29227 5.36702 5.37697 5.50450 5.53902 5.54850 5.56332 5.59017 5.61722 5.67834 5.71888 5.77830 5.80054 5.86100 5.91681 6.00509 6.11096 6.13769 6.15552 6.18336 6.21440 6.33888 6.37841 6.40229 6.50349 6.54589 6.78813 6.90291 7.08193 7.13755 7.56069 7.59533 7.86419 8.08249 8.22803 8.54834 8.90830 9.53262 10.05801 11.08346 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009592 B = 0.003413 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.266908 B = 8201.315884 C =10287.309031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.077 4.077 4 H 0.094 0.906 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.112 4.112 9 H 0.099 0.901 10 C 0.519 3.481 11 O -0.545 6.545 12 N -0.719 5.719 13 C 0.210 3.790 14 C -0.288 4.288 15 C 0.056 3.944 16 N -0.318 5.318 17 N -0.358 5.358 18 C 0.119 3.881 19 C 0.231 3.769 20 N -0.596 5.596 21 C -0.266 4.266 22 H 0.073 0.927 23 C 0.010 3.990 24 N -0.903 5.903 25 Si 0.909 3.091 26 H -0.281 1.281 27 H -0.288 1.288 28 H -0.282 1.282 29 C 0.129 3.871 30 C 0.114 3.886 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.399 0.601 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.175 0.825 46 H 0.056 0.944 47 H 0.109 0.891 48 H 0.260 0.740 49 H 0.084 0.916 50 H 0.036 0.964 51 H 0.076 0.924 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 9.595 10.760 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.096 4.096 4 H 0.112 0.888 5 C -0.157 4.157 6 C -0.161 4.161 7 C -0.154 4.154 8 C -0.134 4.134 9 H 0.117 0.883 10 C 0.305 3.695 11 O -0.423 6.423 12 N -0.369 5.369 13 C 0.086 3.914 14 C -0.300 4.300 15 C -0.131 4.131 16 N -0.138 5.138 17 N -0.139 5.139 18 C -0.013 4.013 19 C 0.105 3.895 20 N -0.319 5.319 21 C -0.394 4.394 22 H 0.091 0.909 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.738 3.262 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.208 1.208 29 C 0.001 3.999 30 C -0.010 4.010 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.232 0.768 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.192 0.808 46 H 0.074 0.926 47 H 0.127 0.873 48 H 0.070 0.930 49 H 0.103 0.897 50 H 0.054 0.946 51 H 0.094 0.906 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.127 9.883 10.010 14.660 hybrid contribution -0.399 -0.875 -0.437 1.056 sum -4.526 9.008 9.573 13.902 Atomic orbital electron populations 1.21746 0.95943 1.01329 1.01623 1.21551 0.95907 0.95885 1.02085 1.21968 0.92630 0.96887 0.98096 0.88799 1.22588 0.98666 0.97286 0.97136 1.22337 0.95170 0.98215 1.00373 1.22126 0.98104 0.96749 0.98372 1.22041 0.98016 1.00762 0.92570 0.88285 1.20492 0.82399 0.76107 0.90536 1.90656 1.49890 1.50154 1.51597 1.46211 1.06996 1.72738 1.10994 1.19292 0.88817 1.01172 0.82114 1.19442 0.95508 0.91821 1.23205 1.23667 0.90196 0.99008 1.00223 1.77165 1.20716 0.90033 1.25909 1.48496 1.06241 1.03593 1.55582 1.22580 0.84606 0.99374 0.94700 1.19912 0.90522 0.77898 1.01188 1.44197 1.01822 1.33134 1.52731 1.19116 0.97330 1.06250 1.16750 0.90923 1.25028 0.97580 0.98071 0.98313 1.69929 1.05865 1.44752 1.34066 0.86275 0.77238 0.80374 0.82334 1.20701 1.21323 1.20812 1.21283 0.91236 0.91199 0.96204 1.22564 0.84732 0.91213 1.02495 0.92668 0.93017 0.92968 0.91564 0.92191 0.91545 0.91445 0.91640 0.91605 0.91022 0.91321 0.76758 0.90972 0.91515 0.80811 0.92628 0.87336 0.92984 0.89741 0.94606 0.90600 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.79 37.16 0.36 -1.13 16 2 C -0.12 -1.32 5.28 -26.73 -0.14 -1.46 16 3 C -0.08 -0.88 2.18 -88.96 -0.19 -1.07 16 4 H 0.09 1.28 6.88 -51.92 -0.36 0.92 16 5 C -0.12 -1.07 5.67 -24.74 -0.14 -1.21 16 6 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 7 C -0.12 -1.11 6.41 -25.61 -0.16 -1.27 16 8 C -0.11 -1.32 2.87 -90.65 -0.26 -1.58 16 9 H 0.10 1.13 7.84 -51.93 -0.41 0.72 16 10 C 0.52 7.83 6.91 -10.98 -0.08 7.76 16 11 O -0.55 -10.13 15.40 5.56 0.09 -10.05 16 12 N -0.72 -10.46 5.44 -61.47 -0.33 -10.79 16 13 C 0.21 3.40 5.95 -5.19 -0.03 3.37 16 14 C -0.29 -4.97 5.46 -105.21 -0.57 -5.54 16 15 C 0.06 0.91 11.97 -17.21 -0.21 0.70 16 16 N -0.32 -5.85 12.61 30.70 0.39 -5.47 16 17 N -0.36 -6.83 4.03 -56.89 -0.23 -7.06 16 18 C 0.12 2.34 6.71 -82.17 -0.55 1.79 16 19 C 0.23 5.18 5.11 -4.48 -0.02 5.16 16 20 N -0.60 -13.79 3.01 -172.92 -0.52 -14.31 16 21 C -0.27 -6.77 9.66 -15.06 -0.15 -6.91 16 22 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 23 C 0.01 0.25 5.00 -17.43 -0.09 0.16 16 24 N -0.90 -24.43 11.07 55.49 0.61 -23.81 16 25 Si 0.91 20.78 29.58 -169.99 -5.03 15.75 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C 0.13 2.39 6.50 -3.55 -0.02 2.37 16 30 C 0.11 1.92 7.45 -3.84 -0.03 1.89 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.45 7.55 -51.93 -0.39 0.06 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.61 8.02 -51.93 -0.42 0.20 16 36 H 0.07 0.55 8.06 -51.93 -0.42 0.14 16 37 H 0.07 0.56 7.97 -51.93 -0.41 0.15 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16 42 H 0.40 5.27 8.46 -40.82 -0.35 4.93 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 46 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.11 2.75 6.46 -51.93 -0.34 2.42 16 48 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 50 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 52 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -29.91 410.96 -10.22 -40.14 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -8.94 Total: 7.63 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.45 Total: 1.78 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.08 Total: -61.44 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.91 -10.22 -40.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069872305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.193 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds