Wall clock time and date at job start Wed Apr 1 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.09007 * 110.53690 * 307.61474 * 3 2 1 5 5 C 1.54885 * 110.48595 * 70.22506 * 3 2 1 6 6 C 1.54892 * 102.75009 * 156.61963 * 5 3 2 7 7 C 1.54272 * 104.19196 * 322.06168 * 6 5 3 8 8 C 1.53869 * 106.60081 * 23.60674 * 7 6 5 9 9 H 1.08995 * 110.03428 * 240.71110 * 8 7 6 10 10 C 1.50708 * 110.03250 * 119.28407 * 8 7 6 11 11 O 1.21275 * 119.99775 * 242.83124 * 10 8 7 12 12 N 1.34770 * 119.99486 * 62.83418 * 10 8 7 13 13 C 1.46504 * 119.99500 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.47119 * 179.97438 * 13 12 10 15 15 C 1.40074 * 126.12732 * 259.68881 * 14 13 12 16 16 N 1.31011 * 108.25516 * 179.97438 * 15 14 13 17 17 N 1.39744 * 108.17691 * 0.53315 * 16 15 14 18 18 C 1.34646 * 126.12647 * 79.99961 * 14 13 12 19 19 C 1.51037 * 127.90420 * 359.44722 * 18 14 13 20 20 N 1.47509 * 106.99579 * 169.56614 * 19 18 14 21 21 C 1.36936 * 121.01234 * 222.97015 * 20 19 18 22 22 H 1.07997 * 119.99683 * 155.89165 * 21 20 19 23 23 C 1.38812 * 120.00014 * 335.90027 * 21 20 19 24 24 N 1.31622 * 120.00043 * 344.44670 * 23 21 20 25 25 Si 1.86794 * 119.99835 * 164.45470 * 23 21 20 26 26 H 1.48498 * 109.47432 * 59.99526 * 25 23 21 27 27 H 1.48505 * 109.47397 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47302 * 299.99392 * 25 23 21 29 29 C 1.47084 * 117.97413 * 42.97784 * 20 19 18 30 30 C 1.46561 * 127.32644 * 179.23722 * 17 16 15 31 31 H 1.08998 * 109.47221 * 59.99994 * 1 2 3 32 32 H 1.09002 * 109.46934 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46391 * 299.99788 * 1 2 3 34 34 H 1.09001 * 109.46391 * 240.00212 * 2 1 3 35 35 H 1.08998 * 109.47221 * 120.00006 * 2 1 3 36 36 H 1.09003 * 110.76251 * 274.93816 * 5 3 2 37 37 H 1.09006 * 110.75612 * 38.30585 * 5 3 2 38 38 H 1.08992 * 110.48755 * 203.38357 * 6 5 3 39 39 H 1.08995 * 110.48340 * 80.73604 * 6 5 3 40 40 H 1.09002 * 110.02973 * 264.32013 * 7 6 5 41 41 H 1.09000 * 110.03032 * 142.89191 * 7 6 5 42 42 H 0.97000 * 120.00851 * 0.02562 * 12 10 8 43 43 H 1.08999 * 109.47385 * 299.99891 * 13 12 10 44 44 H 1.09005 * 109.47457 * 60.00029 * 13 12 10 45 45 H 1.08002 * 125.87234 * 0.09526 * 15 14 13 46 46 H 1.08996 * 109.94981 * 288.93907 * 19 18 14 47 47 H 1.09005 * 109.95255 * 50.19611 * 19 18 14 48 48 H 0.96998 * 119.99479 * 180.02562 * 24 23 21 49 49 H 1.08992 * 109.51042 * 176.52138 * 29 20 19 50 50 H 1.08997 * 109.51459 * 56.36911 * 29 20 19 51 51 H 1.08995 * 109.50242 * 281.39812 * 30 17 16 52 52 H 1.09002 * 109.50707 * 41.48703 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0107 -0.8086 5 6 1.7580 2.1172 1.3653 6 6 2.8154 3.2480 1.4128 7 6 4.0703 2.6196 0.7722 8 6 3.5773 1.4716 -0.1260 9 1 3.9978 0.5251 0.2133 10 6 3.9732 1.7295 -1.5571 11 8 3.1190 1.8776 -2.4052 12 7 5.2763 1.7954 -1.8943 13 6 5.6611 2.0455 -3.2856 14 6 7.1640 2.0721 -3.3941 15 6 7.9673 3.2179 -3.4569 16 7 9.2180 2.8379 -3.5449 17 7 9.2496 1.4409 -3.5533 18 6 7.9747 0.9987 -3.4539 19 6 7.5866 -0.4604 -3.4161 20 7 8.7917 -1.2362 -3.7652 21 6 8.7207 -2.3030 -4.6208 22 1 9.5974 -2.6147 -5.1690 23 6 7.5218 -2.9836 -4.7835 24 7 6.5476 -2.8176 -3.9143 25 14 7.2914 -4.1352 -6.2361 26 1 8.3112 -5.2132 -6.1798 27 1 5.9341 -4.7353 -6.1817 28 1 7.4459 -3.3733 -7.5013 29 6 10.0718 -0.8292 -3.1661 30 6 10.4309 0.5793 -3.6542 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8900 36 1 0.7495 2.5300 1.3913 37 1 1.9091 1.4124 2.1831 38 1 3.0179 3.5379 2.4438 39 1 2.4807 4.1078 0.8325 40 1 4.7300 2.2301 1.5476 41 1 4.5958 3.3632 0.1731 42 1 5.9595 1.6766 -1.2160 43 1 5.2647 1.2530 -3.9203 44 1 5.2570 3.0053 -3.6075 45 1 7.6161 4.2390 -3.4344 46 1 7.2480 -0.7294 -2.4156 47 1 6.7966 -0.6541 -4.1417 48 1 5.7100 -3.2935 -4.0279 49 1 10.8527 -1.5279 -3.4661 50 1 9.9813 -0.8277 -2.0799 51 1 10.7605 0.5338 -4.6922 52 1 11.2313 0.9851 -3.0356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069872305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:11 Heat of formation + Delta-G solvation = 23.050330 kcal Electronic energy + Delta-G solvation = -31409.262978 eV Core-core repulsion = 27409.134398 eV Total energy + Delta-G solvation = -4000.128581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.44697 -41.15579 -38.56071 -37.96673 -36.09470 -34.66804 -34.05248 -32.92334 -31.84765 -30.91758 -29.64256 -28.44017 -27.77009 -26.25170 -25.14792 -23.84806 -23.30595 -22.35282 -21.60272 -21.11582 -20.45646 -19.93005 -18.55545 -18.31344 -17.48743 -17.11624 -16.72637 -16.53139 -16.35390 -15.76422 -15.59602 -15.44015 -15.31919 -15.11839 -14.97108 -14.74405 -14.45715 -14.08367 -13.98714 -13.95798 -13.79390 -13.35853 -13.10465 -12.97230 -12.81941 -12.72682 -12.64463 -12.57168 -12.38777 -12.13603 -12.04706 -11.93350 -11.85590 -11.64887 -11.62909 -11.47907 -11.40008 -11.24754 -10.80264 -10.73755 -10.07790 -9.99618 -9.39329 -8.96572 -8.00160 -5.43762 0.91906 1.44536 1.48035 1.53097 1.58332 1.65344 1.73814 2.43623 2.56292 3.18990 3.41990 3.52436 3.59466 3.68784 3.80053 3.82833 4.09849 4.17470 4.20597 4.23339 4.29275 4.36191 4.36902 4.45769 4.47804 4.54718 4.70095 4.73323 4.75369 4.77455 4.80770 4.86150 4.86765 4.92882 4.97366 5.01034 5.06751 5.15434 5.22656 5.25750 5.26905 5.31328 5.35263 5.43612 5.45959 5.50499 5.56845 5.64336 5.74383 6.07940 6.18797 6.65155 6.79050 6.97582 7.32681 7.64176 8.15233 9.08868 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009592 B = 0.003413 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.266908 B = 8201.315884 C =10287.309031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.078 4.078 4 H 0.067 0.933 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.110 4.110 9 H 0.103 0.897 10 C 0.514 3.486 11 O -0.585 6.585 12 N -0.711 5.711 13 C 0.217 3.783 14 C -0.274 4.274 15 C 0.067 3.933 16 N -0.325 5.325 17 N -0.366 5.366 18 C 0.095 3.905 19 C 0.251 3.749 20 N -0.616 5.616 21 C -0.270 4.270 22 H 0.080 0.920 23 C -0.041 4.041 24 N -0.930 5.930 25 Si 0.965 3.035 26 H -0.270 1.270 27 H -0.296 1.296 28 H -0.283 1.283 29 C 0.128 3.872 30 C 0.117 3.883 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.407 0.593 43 H 0.039 0.961 44 H 0.081 0.919 45 H 0.214 0.786 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.252 0.748 49 H 0.099 0.901 50 H 0.041 0.959 51 H 0.076 0.924 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 11.124 12.353 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.097 4.097 4 H 0.085 0.915 5 C -0.149 4.149 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.131 4.131 9 H 0.121 0.879 10 C 0.302 3.698 11 O -0.466 6.466 12 N -0.362 5.362 13 C 0.092 3.908 14 C -0.286 4.286 15 C -0.119 4.119 16 N -0.145 5.145 17 N -0.148 5.148 18 C -0.036 4.036 19 C 0.124 3.876 20 N -0.339 5.339 21 C -0.399 4.399 22 H 0.097 0.903 23 C -0.237 4.237 24 N -0.575 5.575 25 Si 0.793 3.207 26 H -0.195 1.195 27 H -0.222 1.222 28 H -0.209 1.209 29 C 0.002 3.998 30 C -0.006 4.006 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.242 0.758 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.231 0.769 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.061 0.939 49 H 0.118 0.882 50 H 0.059 0.941 51 H 0.095 0.905 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.993 11.418 11.623 16.566 hybrid contribution -0.697 -1.310 -0.949 1.761 sum -3.690 10.108 10.674 15.156 Atomic orbital electron populations 1.21726 0.94870 1.01774 1.01975 1.21548 0.96931 0.95803 1.01163 1.21938 0.92100 0.96686 0.99000 0.91479 1.22562 0.99366 0.97414 0.95538 1.22347 0.94326 0.97726 1.01419 1.22148 0.98871 0.95662 0.98242 1.22108 0.98504 1.02023 0.90479 0.87862 1.21165 0.81902 0.74977 0.91756 1.90636 1.50891 1.51972 1.53087 1.46118 1.07279 1.72340 1.10462 1.19121 0.88339 1.00650 0.82665 1.19532 0.95601 0.91796 1.21715 1.24231 0.89097 1.00226 0.98392 1.77161 1.21701 0.89392 1.26288 1.48686 1.06183 1.04118 1.55815 1.22201 0.85881 0.98303 0.97233 1.19326 0.89670 0.79871 0.98753 1.44429 1.03452 1.32899 1.53134 1.19466 0.97400 1.06240 1.16824 0.90270 1.25704 0.97666 0.99942 1.00390 1.70081 1.05943 1.45929 1.35582 0.85383 0.76754 0.78950 0.79638 1.19526 1.22227 1.20879 1.21452 0.89501 0.92616 0.96278 1.22559 0.84900 0.89960 1.03151 0.93850 0.92550 0.91034 0.94785 0.90727 0.90676 0.90039 0.89467 0.92165 0.89093 0.91734 0.75777 0.94242 0.90084 0.76915 0.94747 0.91193 0.93875 0.88230 0.94088 0.90546 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.79 71.99 0.70 -2.18 16 2 C -0.12 -2.68 5.28 30.60 0.16 -2.52 16 3 C -0.08 -1.78 2.18 -9.72 -0.02 -1.80 16 4 H 0.07 1.91 6.88 -2.38 -0.02 1.89 16 5 C -0.11 -1.77 5.67 31.88 0.18 -1.58 16 6 C -0.12 -1.80 6.83 31.67 0.22 -1.58 16 7 C -0.11 -1.92 6.41 31.32 0.20 -1.72 16 8 C -0.11 -2.56 2.87 -10.82 -0.03 -2.59 16 9 H 0.10 2.32 7.84 -2.39 -0.02 2.31 16 10 C 0.51 16.02 6.91 87.66 0.61 16.63 16 11 O -0.59 -22.91 15.40 -3.01 -0.05 -22.95 16 12 N -0.71 -21.05 5.44 -466.78 -2.54 -23.59 16 13 C 0.22 7.16 5.95 85.63 0.51 7.67 16 14 C -0.27 -9.32 5.46 -20.24 -0.11 -9.43 16 15 C 0.07 2.01 11.97 85.26 1.02 3.03 16 16 N -0.33 -11.17 12.61 -56.79 -0.72 -11.88 16 17 N -0.37 -13.46 4.03 -333.90 -1.35 -14.80 16 18 C 0.10 3.76 6.71 41.31 0.28 4.03 16 19 C 0.25 11.67 5.11 85.55 0.44 12.10 16 20 N -0.62 -28.83 3.01 -701.00 -2.11 -30.94 16 21 C -0.27 -13.90 9.66 84.03 0.81 -13.08 16 22 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 23 C -0.04 -2.17 5.00 84.86 0.42 -1.74 16 24 N -0.93 -52.52 11.07 21.65 0.24 -52.29 16 25 Si 0.96 43.55 29.58 68.60 2.03 45.58 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 29 C 0.13 4.62 6.50 86.38 0.56 5.19 16 30 C 0.12 3.73 7.45 86.48 0.64 4.37 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.13 7.55 -2.39 -0.02 1.11 16 34 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.47 8.02 -2.39 -0.02 1.45 16 36 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16 37 H 0.08 1.10 7.97 -2.38 -0.02 1.08 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.18 7.62 -2.39 -0.02 1.16 16 42 H 0.41 10.69 8.46 -92.71 -0.78 9.91 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.21 4.56 8.06 -2.91 -0.02 4.53 16 46 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.07 3.78 6.46 -2.38 -0.02 3.76 16 48 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.10 3.24 7.94 -2.39 -0.02 3.22 16 50 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 51 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 52 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -67.05 410.96 2.23 -64.82 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.12 Total: 31.27 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.59 Total: 14.79 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -6.47 Total: -133.51 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.05 2.23 -64.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069872305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.873 kcal (2) G-P(sol) polarization free energy of solvation -67.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds