Wall clock time and date at job start Wed Apr 1 2020 04:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 C 1.53000 * 109.47225 * 119.99567 * 2 1 3 5 5 C 1.50703 * 109.46665 * 65.00223 * 4 2 1 6 6 O 1.21276 * 120.00313 * 359.97438 * 5 4 2 7 7 N 1.34787 * 119.99759 * 179.97438 * 5 4 2 8 8 C 1.46924 * 120.63033 * 359.72119 * 7 5 4 9 9 C 1.53194 * 108.77334 * 233.88527 * 8 7 5 10 10 C 1.53038 * 109.31101 * 305.36035 * 9 8 7 11 11 N 1.46502 * 109.44869 * 181.38105 * 10 9 8 12 12 N 1.40034 * 126.04707 * 299.96600 * 11 10 9 13 13 C 1.30767 * 108.20136 * 179.97438 * 12 11 10 14 14 C 1.40135 * 108.20592 * 0.02562 * 13 12 11 15 15 C 1.35012 * 107.90011 * 359.77060 * 14 13 12 16 16 C 1.50760 * 109.36431 * 180.27743 * 15 14 13 17 17 N 1.46752 * 107.48959 * 0.14319 * 16 15 14 18 18 C 1.36935 * 126.83442 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00447 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99729 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99902 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 120.00143 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46948 * 60.00415 * 22 20 18 24 24 H 1.48498 * 109.47318 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47539 * 300.00275 * 22 20 18 26 26 C 1.46746 * 106.32088 * 359.64408 * 17 16 15 27 27 C 1.53045 * 109.53516 * 61.36880 * 10 9 8 28 28 C 1.46926 * 120.62918 * 180.02562 * 7 5 4 29 29 H 1.09002 * 109.46798 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47340 * 299.99996 * 1 2 3 31 31 H 1.09003 * 109.46889 * 60.00192 * 1 2 3 32 32 H 1.08998 * 109.47340 * 240.00003 * 2 1 3 33 33 H 1.08999 * 109.47313 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47096 * 300.00210 * 3 2 1 35 35 H 1.08998 * 109.47069 * 59.99838 * 3 2 1 36 36 H 1.08998 * 109.47231 * 305.00418 * 4 2 1 37 37 H 1.09001 * 109.47359 * 185.00291 * 4 2 1 38 38 H 1.09004 * 109.58777 * 353.67036 * 8 7 5 39 39 H 1.08994 * 109.58607 * 114.09373 * 8 7 5 40 40 H 1.09005 * 109.49558 * 185.41228 * 9 8 7 41 41 H 1.09001 * 109.49919 * 65.31913 * 9 8 7 42 42 H 1.08994 * 109.46487 * 301.34997 * 10 9 8 43 43 H 1.08006 * 125.89763 * 180.02562 * 13 12 11 44 44 H 1.09000 * 109.84552 * 119.62244 * 16 15 14 45 45 H 1.09003 * 109.84810 * 240.54436 * 16 15 14 46 46 H 0.96996 * 120.00120 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.32925 * 240.66629 * 26 17 16 48 48 H 1.08999 * 109.35780 * 119.64512 * 26 17 16 49 49 H 1.08998 * 109.49685 * 178.67744 * 27 10 9 50 50 H 1.09001 * 109.52360 * 58.59815 * 27 10 9 51 51 H 1.09001 * 109.58178 * 245.90575 * 28 7 5 52 52 H 1.08998 * 109.58625 * 6.18591 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6414 -2.1732 1.1889 6 8 1.0110 -2.5901 0.2404 7 7 1.9854 -3.0087 2.1891 8 6 2.7542 -2.5198 3.3418 9 6 3.9993 -3.3960 3.5114 10 6 3.5755 -4.8629 3.6151 11 7 4.7614 -5.7006 3.8105 12 7 5.8489 -5.8066 2.9346 13 6 6.7079 -6.6472 3.4498 14 6 6.1946 -7.1044 4.6709 15 6 5.0017 -6.5044 4.8704 16 6 4.4217 -6.9689 6.1821 17 7 5.3752 -7.9130 6.7764 18 6 5.2418 -8.5734 7.9685 19 1 4.3616 -8.4202 8.5752 20 6 6.2376 -9.4406 8.3967 21 7 7.3101 -9.6276 7.6571 22 14 6.0555 -10.3420 10.0226 23 1 4.8351 -11.1873 9.9858 24 1 7.2460 -11.2002 10.2488 25 1 5.9407 -9.3547 11.1259 26 6 6.4955 -8.0155 5.8342 27 6 2.8619 -5.2817 2.3276 28 6 1.6045 -4.4270 2.1443 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2616 2.1370 37 1 3.1264 -0.6442 1.2952 38 1 3.0554 -1.4866 3.1685 39 1 2.1411 -2.5779 4.2411 40 1 4.5280 -3.1050 4.4192 41 1 4.6553 -3.2667 2.6505 42 1 2.9000 -4.9868 4.4614 43 1 7.6503 -6.9388 3.0100 44 1 4.2815 -6.1167 6.8472 45 1 3.4663 -7.4645 6.0095 46 1 8.0061 -10.2333 7.9564 47 1 6.6019 -9.0418 5.4825 48 1 7.4130 -7.6949 6.3276 49 1 2.5812 -6.3329 2.3927 50 1 3.5283 -5.1351 1.4776 51 1 0.8974 -4.6409 2.9458 52 1 1.1448 -4.6516 1.1818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070342665.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:59 Heat of formation + Delta-G solvation = 77.953331 kcal Electronic energy + Delta-G solvation = -30681.999953 eV Core-core repulsion = 26684.252145 eV Total energy + Delta-G solvation = -3997.747808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.19518 -40.49762 -38.04953 -36.20627 -35.81699 -33.98133 -32.14549 -31.71007 -30.47450 -28.96714 -28.47940 -27.41134 -26.76122 -25.20404 -24.64672 -23.64608 -22.08452 -21.26060 -20.69460 -19.62504 -19.27989 -18.76124 -17.47273 -16.86924 -16.41168 -16.00439 -15.91083 -15.22173 -15.01399 -14.82339 -14.40853 -14.33726 -14.08467 -14.02747 -13.81051 -13.49226 -13.25688 -13.01702 -12.78592 -12.69892 -12.55204 -12.44959 -12.29556 -12.12788 -11.68837 -11.56074 -11.43430 -11.38422 -11.19959 -11.11832 -11.08347 -11.03538 -10.98203 -10.81729 -10.58349 -10.28047 -10.04444 -9.92743 -9.79720 -9.00905 -8.96861 -8.75904 -7.68333 -6.82405 -5.80522 -3.15868 2.28979 2.32940 2.59608 2.68033 3.37417 3.37982 3.41188 3.43108 4.12107 4.23761 4.37616 4.41453 4.47901 4.54900 4.60498 4.71423 4.81963 4.88553 4.91467 5.02095 5.09359 5.12891 5.21036 5.26575 5.28921 5.34644 5.35756 5.42363 5.42827 5.51104 5.56475 5.56610 5.62289 5.66645 5.80948 5.83691 5.86271 6.00669 6.01978 6.10372 6.19370 6.21087 6.38770 6.41373 6.84491 7.05314 7.20094 7.41550 7.49918 7.54881 7.76243 7.88954 8.08659 8.20649 9.10647 9.69487 10.37306 11.32535 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.001984 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.906533 B =14107.267843 C =14421.266690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.138 4.138 5 C 0.517 3.483 6 O -0.537 6.537 7 N -0.615 5.615 8 C 0.110 3.890 9 C -0.143 4.143 10 C 0.171 3.829 11 N -0.356 5.356 12 N -0.300 5.300 13 C 0.068 3.932 14 C -0.253 4.253 15 C 0.036 3.964 16 C 0.219 3.781 17 N -0.595 5.595 18 C -0.231 4.231 19 H 0.083 0.917 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.918 3.082 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.245 3.755 27 C -0.140 4.140 28 C 0.115 3.885 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.179 0.821 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.256 0.744 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.071 0.929 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.355 19.262 -11.901 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.306 3.694 6 O -0.415 6.415 7 N -0.349 5.349 8 C -0.013 4.013 9 C -0.181 4.181 10 C 0.068 3.932 11 N -0.139 5.139 12 N -0.120 5.120 13 C -0.117 4.117 14 C -0.264 4.264 15 C -0.090 4.090 16 C 0.091 3.909 17 N -0.322 5.322 18 C -0.358 4.358 19 H 0.101 0.899 20 C -0.200 4.200 21 N -0.563 5.563 22 Si 0.748 3.252 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.119 3.881 27 C -0.179 4.179 28 C -0.008 4.008 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.196 0.804 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.089 0.911 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.935 19.718 -13.256 26.155 hybrid contribution 0.364 -1.063 1.566 1.927 sum -10.571 18.654 -11.690 24.421 Atomic orbital electron populations 1.21958 0.94713 1.03347 1.01011 1.20879 0.96655 0.95365 0.97155 1.21866 1.00948 0.95741 1.02003 1.21830 1.02893 0.92025 1.01001 1.20745 0.78847 0.88382 0.81406 1.90660 1.40093 1.77876 1.32827 1.48222 1.55395 1.09768 1.21559 1.21775 0.92181 0.98587 0.88788 1.22283 0.97964 0.93553 1.04350 1.21132 0.83690 0.89250 0.99128 1.47910 1.16149 1.35287 1.14582 1.77224 0.96057 1.22993 1.15748 1.23175 0.99065 0.95748 0.93738 1.21926 0.97739 1.07028 0.99736 1.21792 0.98971 0.94920 0.93341 1.19096 0.93057 0.93176 0.85593 1.44014 1.18295 1.49343 1.20587 1.18868 1.04037 1.19201 0.93681 0.89897 1.24847 0.96508 0.99690 0.98998 1.69946 1.09080 1.39613 1.37632 0.86113 0.77021 0.79342 0.82726 1.21010 1.21464 1.21005 1.19036 0.91045 0.94492 0.83525 1.22255 0.97185 1.00436 0.98031 1.21577 0.95986 0.79210 1.04038 0.90745 0.93398 0.92955 0.90426 0.92626 0.92364 0.92630 0.88857 0.88808 0.88959 0.90587 0.89815 0.89917 0.88296 0.80439 0.94570 0.94665 0.93372 0.92819 0.92735 0.89970 0.90040 0.91055 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.93 37.16 0.33 -0.89 16 2 C -0.08 -0.61 2.57 -90.62 -0.23 -0.84 16 3 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 4 C -0.14 -0.94 3.52 -27.88 -0.10 -1.04 16 5 C 0.52 5.14 7.42 -10.98 -0.08 5.06 16 6 O -0.54 -7.13 13.38 5.56 0.07 -7.06 16 7 N -0.62 -5.50 2.97 -172.80 -0.51 -6.02 16 8 C 0.11 0.76 6.34 -3.71 -0.02 0.74 16 9 C -0.14 -1.38 5.62 -26.61 -0.15 -1.53 16 10 C 0.17 2.04 2.93 -67.89 -0.20 1.84 16 11 N -0.36 -5.84 3.28 -50.65 -0.17 -6.00 16 12 N -0.30 -5.24 12.42 30.67 0.38 -4.86 16 13 C 0.07 1.24 12.03 -17.29 -0.21 1.03 16 14 C -0.25 -5.31 6.98 -105.01 -0.73 -6.05 16 15 C 0.04 0.70 7.62 -82.24 -0.63 0.08 16 16 C 0.22 4.53 7.28 -5.03 -0.04 4.49 16 17 N -0.59 -15.15 3.42 -175.49 -0.60 -15.75 16 18 C -0.23 -6.24 10.34 -15.06 -0.16 -6.39 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 21 N -0.92 -26.31 10.49 55.49 0.58 -25.73 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.24 6.08 5.41 -5.02 -0.03 6.05 16 27 C -0.14 -1.56 5.62 -26.63 -0.15 -1.71 16 28 C 0.11 1.09 6.43 -3.74 -0.02 1.07 16 29 H 0.07 0.77 5.95 -51.93 -0.31 0.46 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.70 7.96 -51.93 -0.41 0.29 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.48 7.95 -51.93 -0.41 0.07 16 37 H 0.09 0.53 7.68 -51.93 -0.40 0.13 16 38 H 0.09 0.45 5.93 -51.93 -0.31 0.14 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.07 8.07 -51.93 -0.42 0.66 16 43 H 0.18 2.65 8.06 -52.48 -0.42 2.23 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.05 1.46 7.53 -51.93 -0.39 1.07 16 48 H 0.05 1.48 7.49 -51.93 -0.39 1.09 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.10 1.05 7.00 -51.93 -0.36 0.69 16 LS Contribution 406.18 15.07 6.12 6.12 Total: -1.00 -32.48 406.18 -10.18 -42.66 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.87 Total: -0.96 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.17 Total: 1.23 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.32 Total: -58.35 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.07 Total: -7.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.48 -10.18 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070342665.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.612 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds