Wall clock time and date at job start Wed Apr 1 2020 04:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47429 * 2 1 4 4 C 1.52997 * 109.47257 * 239.99617 * 2 1 3 5 5 C 1.50709 * 109.46652 * 120.00309 * 2 1 3 6 6 O 1.21283 * 119.99910 * 352.57641 * 5 2 1 7 7 N 1.34776 * 119.99633 * 172.30725 * 5 2 1 8 8 C 1.46921 * 120.63194 * 5.73742 * 7 5 2 9 9 C 1.53626 * 108.54467 * 126.37275 * 8 7 5 10 10 C 1.53041 * 109.23913 * 54.85473 * 9 8 7 11 11 N 1.46503 * 109.44400 * 178.49852 * 10 9 8 12 12 N 1.40030 * 126.04864 * 60.09012 * 11 10 9 13 13 C 1.30764 * 108.20470 * 179.97438 * 12 11 10 14 14 C 1.40139 * 108.20370 * 359.97438 * 13 12 11 15 15 C 1.35013 * 107.90198 * 359.77349 * 14 13 12 16 16 C 1.50761 * 109.36615 * 180.27623 * 15 14 13 17 17 N 1.46749 * 107.48686 * 0.14290 * 16 15 14 18 18 C 1.36937 * 126.83227 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00466 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99705 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99996 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47401 * 59.99715 * 22 20 18 24 24 H 1.48500 * 109.46971 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47060 * 299.99745 * 22 20 18 26 26 C 1.46746 * 106.32560 * 359.64261 * 17 16 15 27 27 C 1.53042 * 109.53733 * 298.51110 * 10 9 8 28 28 C 1.46921 * 120.62681 * 186.02172 * 7 5 2 29 29 H 1.08998 * 109.47274 * 300.00056 * 1 2 3 30 30 H 1.09001 * 109.47176 * 60.00091 * 1 2 3 31 31 H 1.08995 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47259 * 167.94195 * 3 2 1 33 33 H 1.08997 * 109.47315 * 287.94925 * 3 2 1 34 34 H 1.09007 * 109.47038 * 47.94583 * 3 2 1 35 35 H 1.08996 * 109.47565 * 289.91380 * 4 2 1 36 36 H 1.09002 * 109.46940 * 49.90943 * 4 2 1 37 37 H 1.08994 * 109.47295 * 169.90412 * 4 2 1 38 38 H 1.09002 * 109.58540 * 246.20670 * 8 7 5 39 39 H 1.09004 * 109.58732 * 6.62498 * 8 7 5 40 40 H 1.09003 * 109.63335 * 294.86477 * 9 8 7 41 41 H 1.08995 * 109.45798 * 174.74172 * 9 8 7 42 42 H 1.09002 * 109.45972 * 58.53595 * 10 9 8 43 43 H 1.08005 * 125.90410 * 180.02562 * 13 12 11 44 44 H 1.08997 * 109.84066 * 119.62773 * 16 15 14 45 45 H 1.08995 * 109.84370 * 240.54738 * 16 15 14 46 46 H 0.96999 * 120.00246 * 180.02562 * 21 20 18 47 47 H 1.08996 * 110.33040 * 240.66580 * 26 17 16 48 48 H 1.08998 * 109.35730 * 119.64281 * 26 17 16 49 49 H 1.09001 * 109.49642 * 301.41376 * 27 10 9 50 50 H 1.09005 * 109.51902 * 181.33317 * 27 10 9 51 51 H 1.08999 * 109.58998 * 353.36763 * 28 7 5 52 52 H 1.09004 * 109.58818 * 113.65588 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2523 -1.0525 2.0941 7 7 3.3474 -0.9708 1.3687 8 6 4.3184 -0.4595 0.3918 9 6 5.4092 0.3154 1.1467 10 6 6.0166 -0.5878 2.2225 11 7 7.0821 0.1349 2.9215 12 7 6.9348 1.3281 3.6394 13 6 8.1042 1.6635 4.1188 14 6 9.0346 0.6936 3.7218 15 6 8.3802 -0.2355 2.9929 16 6 9.3516 -1.3013 2.5534 17 7 10.6712 -0.9417 3.0852 18 6 11.8394 -1.6373 2.9221 19 1 11.8470 -2.5540 2.3512 20 6 13.0139 -1.1646 3.4915 21 7 13.0045 -0.0482 4.1885 22 14 14.6077 -2.1130 3.2684 23 1 14.9256 -2.2135 1.8213 24 1 15.7080 -1.4038 3.9694 25 1 14.4563 -3.4762 3.8377 26 6 10.4914 0.3165 3.8187 27 6 4.9321 -0.9914 3.2241 28 6 3.8366 -1.7764 2.4958 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1086 1.4499 0.2147 33 1 1.8626 1.8906 -0.9776 34 1 1.5122 2.0145 0.7631 35 1 1.8312 -1.7877 -1.1638 36 1 1.5372 -0.3221 -2.1300 37 1 3.1150 -0.5680 -1.3438 38 1 4.7664 -1.2932 -0.1488 39 1 3.8150 0.2055 -0.3101 40 1 4.9736 1.1977 1.6158 41 1 6.1869 0.6219 0.4472 42 1 6.4301 -1.4816 1.7551 43 1 8.3164 2.5367 4.7181 44 1 9.0438 -2.2688 2.9500 45 1 9.3881 -1.3424 1.4648 46 1 13.8252 0.2823 4.5860 47 1 11.1069 1.1019 3.3800 48 1 10.7667 0.1685 4.8629 49 1 4.5011 -0.0968 3.6736 50 1 5.3700 -1.6153 4.0033 51 1 3.0154 -1.9805 3.1827 52 1 4.2439 -2.7164 2.1235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070350030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:04 Heat of formation + Delta-G solvation = 99.246951 kcal Electronic energy + Delta-G solvation = -31393.871963 eV Core-core repulsion = 27397.047515 eV Total energy + Delta-G solvation = -3996.824447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.31869 -40.81069 -37.91469 -36.29175 -36.14193 -33.84509 -32.14298 -31.48705 -30.35271 -28.93438 -27.82212 -27.62069 -26.89332 -25.56543 -24.82053 -23.73636 -22.82114 -21.45364 -20.90266 -19.69561 -19.23484 -18.64899 -17.06839 -16.83121 -16.40492 -15.91915 -15.70571 -15.25805 -14.94317 -14.76392 -14.68497 -14.34658 -14.16172 -13.90668 -13.76074 -13.37456 -13.02224 -12.93940 -12.80633 -12.68989 -12.64299 -12.45059 -12.39363 -12.09846 -12.02769 -11.62914 -11.54661 -11.43027 -11.36978 -11.23470 -11.11212 -11.02858 -10.85651 -10.76938 -10.55524 -10.27497 -10.04035 -9.84548 -9.79559 -8.99897 -8.96541 -8.75078 -7.67879 -6.82197 -5.80384 -3.15743 2.29593 2.32960 2.60471 2.67983 3.37490 3.38465 3.41242 3.43166 3.97416 4.24167 4.32846 4.39152 4.43945 4.47014 4.58707 4.66563 4.82624 4.83115 4.90834 5.01361 5.05041 5.09380 5.18072 5.23639 5.28566 5.33542 5.40925 5.41625 5.42691 5.46396 5.50495 5.53515 5.58464 5.64804 5.73233 5.78195 5.85909 5.87608 5.90930 6.02217 6.19371 6.20799 6.39032 6.41921 6.84964 7.06323 7.20574 7.42049 7.50196 7.55170 7.76484 7.88302 8.08993 8.21148 9.10785 9.69636 10.37474 11.32668 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.002219 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.097884 B =12616.117645 C =12951.150169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.155 4.155 4 C -0.158 4.158 5 C 0.527 3.473 6 O -0.540 6.540 7 N -0.610 5.610 8 C 0.088 3.912 9 C -0.143 4.143 10 C 0.171 3.829 11 N -0.356 5.356 12 N -0.299 5.299 13 C 0.068 3.932 14 C -0.253 4.253 15 C 0.036 3.964 16 C 0.219 3.781 17 N -0.595 5.595 18 C -0.231 4.231 19 H 0.083 0.917 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.918 3.082 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.245 3.755 27 C -0.140 4.140 28 C 0.114 3.886 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.179 0.821 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.256 0.744 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.098 0.902 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.754 0.750 -10.528 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.090 4.090 3 C -0.212 4.212 4 C -0.215 4.215 5 C 0.315 3.685 6 O -0.416 6.416 7 N -0.344 5.344 8 C -0.034 4.034 9 C -0.182 4.182 10 C 0.068 3.932 11 N -0.139 5.139 12 N -0.120 5.120 13 C -0.117 4.117 14 C -0.265 4.265 15 C -0.090 4.090 16 C 0.091 3.909 17 N -0.323 5.323 18 C -0.358 4.358 19 H 0.101 0.899 20 C -0.200 4.200 21 N -0.563 5.563 22 Si 0.748 3.252 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.119 3.881 27 C -0.179 4.179 28 C -0.009 4.009 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.196 0.804 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.116 0.884 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.251 0.821 -10.133 25.376 hybrid contribution 1.801 -0.570 0.072 1.890 sum -21.450 0.250 -10.061 23.693 Atomic orbital electron populations 1.21663 0.91781 1.02726 1.02202 1.20790 0.98131 0.96515 0.93540 1.22151 1.02092 0.93667 1.03297 1.22297 1.02378 1.00742 0.96056 1.20624 0.81480 0.78594 0.87757 1.90682 1.55070 1.52894 1.42973 1.48085 1.06325 1.53081 1.26890 1.22548 0.90147 0.99128 0.91610 1.22391 0.98413 0.99424 0.98006 1.21134 0.86480 0.93773 0.91785 1.47917 1.04563 1.18981 1.42442 1.77224 1.22231 0.98535 1.13993 1.23173 0.89089 0.99473 1.00005 1.21928 1.00153 0.97598 1.06773 1.21794 0.85095 1.00830 1.01321 1.19093 0.84122 0.91281 0.96418 1.44015 1.02315 1.24716 1.61207 1.18870 0.83520 1.04177 1.29223 0.89900 1.24848 0.97957 0.97612 0.99621 1.69947 1.26951 1.21476 1.37901 0.86115 0.82581 0.78869 0.77653 1.21002 1.21467 1.20998 1.19034 0.83995 0.87947 0.97112 1.22260 0.95383 1.02040 0.98199 1.21605 0.97471 0.93124 0.88673 0.91765 0.91946 0.92123 0.91020 0.91053 0.91671 0.92014 0.91256 0.90618 0.90667 0.86715 0.89864 0.89840 0.88320 0.80449 0.94576 0.94674 0.93371 0.92819 0.92743 0.90009 0.89989 0.88367 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 7.75 37.16 0.29 -0.68 16 2 C -0.09 -0.66 0.75 -155.66 -0.12 -0.77 16 3 C -0.15 -1.01 8.10 37.15 0.30 -0.71 16 4 C -0.16 -0.88 7.97 37.16 0.30 -0.58 16 5 C 0.53 5.65 6.46 -10.98 -0.07 5.58 16 6 O -0.54 -7.78 15.40 5.56 0.09 -7.70 16 7 N -0.61 -5.72 2.95 -172.50 -0.51 -6.23 16 8 C 0.09 0.65 4.01 -3.49 -0.01 0.63 16 9 C -0.14 -1.41 5.48 -26.38 -0.14 -1.56 16 10 C 0.17 2.07 2.92 -67.89 -0.20 1.87 16 11 N -0.36 -5.86 3.28 -50.65 -0.17 -6.02 16 12 N -0.30 -5.25 12.42 30.67 0.38 -4.87 16 13 C 0.07 1.24 12.03 -17.29 -0.21 1.03 16 14 C -0.25 -5.33 6.98 -105.01 -0.73 -6.06 16 15 C 0.04 0.70 7.62 -82.23 -0.63 0.08 16 16 C 0.22 4.54 7.28 -5.03 -0.04 4.50 16 17 N -0.60 -15.18 3.42 -175.50 -0.60 -15.78 16 18 C -0.23 -6.24 10.34 -15.06 -0.16 -6.40 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 21 N -0.92 -26.34 10.49 55.49 0.58 -25.76 16 22 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.24 6.09 5.41 -5.01 -0.03 6.06 16 27 C -0.14 -1.59 5.62 -26.61 -0.15 -1.74 16 28 C 0.11 1.12 6.44 -3.71 -0.02 1.09 16 29 H 0.06 0.57 8.02 -51.93 -0.42 0.15 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.48 4.98 -51.93 -0.26 0.22 16 33 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.06 0.48 8.09 -51.92 -0.42 0.06 16 35 H 0.06 0.38 8.11 -51.93 -0.42 -0.04 16 36 H 0.07 0.30 8.11 -51.93 -0.42 -0.12 16 37 H 0.08 0.35 4.69 -51.93 -0.24 0.11 16 38 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.12 0.67 2.56 -51.93 -0.13 0.53 16 40 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.09 8.07 -51.93 -0.42 0.67 16 43 H 0.18 2.66 8.06 -52.48 -0.42 2.24 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.05 1.46 7.54 -51.93 -0.39 1.07 16 48 H 0.05 1.49 7.49 -51.93 -0.39 1.10 16 49 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.10 1.08 7.00 -51.93 -0.36 0.72 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -32.92 397.70 -9.46 -42.38 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.49 Total: -0.54 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.72 Total: 2.16 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.31 Total: -58.67 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.92 -9.46 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070350030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.623 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds