Wall clock time and date at job start Wed Apr 1 2020 04:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46672 * 2 1 4 4 C 1.53002 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.09008 * 115.55674 * 29.31101 * 4 3 2 6 6 C 1.52995 * 117.49887 * 243.62326 * 4 3 2 7 7 C 1.52996 * 117.50265 * 174.99851 * 4 3 2 8 8 H 1.09006 * 117.51705 * 0.02562 * 7 4 3 9 9 C 1.50694 * 117.50082 * 214.98195 * 7 4 3 10 10 O 1.21281 * 120.00040 * 359.97438 * 9 7 4 11 11 N 1.34779 * 120.00189 * 179.97438 * 9 7 4 12 12 C 1.46500 * 120.00438 * 179.97438 * 11 9 7 13 13 C 1.50694 * 109.47424 * 180.02562 * 12 11 9 14 14 C 1.35318 * 126.04218 * 260.14589 * 13 12 11 15 15 N 1.34944 * 107.75016 * 180.27426 * 14 13 12 16 16 H 0.96997 * 126.04277 * 179.74763 * 15 14 13 17 17 N 1.40088 * 107.92476 * 359.74579 * 15 14 13 18 18 C 1.30838 * 108.20128 * 0.02562 * 17 15 14 19 19 C 1.50704 * 125.89493 * 179.97438 * 18 17 15 20 20 H 1.08998 * 110.77826 * 178.23937 * 19 18 17 21 21 C 1.55156 * 110.72105 * 55.00499 * 19 18 17 22 22 C 1.55122 * 101.48720 * 205.96943 * 21 19 18 23 23 N 1.47425 * 104.72620 * 37.29027 * 22 21 19 24 24 C 1.36934 * 125.64935 * 155.81410 * 23 22 21 25 25 H 1.08002 * 119.99686 * 189.80166 * 24 23 22 26 26 C 1.38804 * 120.00070 * 9.53495 * 24 23 22 27 27 N 1.31620 * 120.00406 * 9.87362 * 26 24 23 28 28 Si 1.86799 * 120.00161 * 189.87496 * 26 24 23 29 29 H 1.48502 * 109.47270 * 94.12759 * 28 26 24 30 30 H 1.48496 * 109.47727 * 214.12668 * 28 26 24 31 31 H 1.48500 * 109.47334 * 334.13189 * 28 26 24 32 32 C 1.47020 * 108.69873 * 335.55721 * 23 22 21 33 33 H 1.08997 * 109.47409 * 59.99993 * 1 2 3 34 34 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46985 * 299.99608 * 1 2 3 36 36 H 1.08994 * 109.46667 * 240.00161 * 2 1 3 37 37 H 1.09000 * 109.46913 * 119.99910 * 2 1 3 38 38 H 1.09000 * 109.47096 * 60.00459 * 3 2 1 39 39 H 1.08997 * 109.47209 * 300.00129 * 3 2 1 40 40 H 1.09004 * 117.49624 * 145.01754 * 6 4 3 41 41 H 1.08999 * 117.52323 * 359.97438 * 6 4 3 42 42 H 0.97005 * 119.99997 * 0.02562 * 11 9 7 43 43 H 1.08998 * 109.47109 * 59.99566 * 12 11 9 44 44 H 1.09004 * 109.46858 * 300.00204 * 12 11 9 45 45 H 1.07999 * 126.12215 * 0.02562 * 14 13 12 46 46 H 1.09005 * 111.00151 * 324.20638 * 21 19 18 47 47 H 1.09004 * 111.00548 * 88.01829 * 21 19 18 48 48 H 1.09001 * 110.49915 * 278.45202 * 22 21 19 49 49 H 1.08996 * 110.34738 * 156.05693 * 22 21 19 50 50 H 0.97000 * 120.00544 * 180.02562 * 27 26 24 51 51 H 1.09003 * 109.88231 * 120.70045 * 32 23 22 52 52 H 1.09004 * 109.88149 * 241.86211 * 32 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0401 0.5852 -0.4824 6 6 4.2769 2.0454 1.2150 7 6 4.2763 2.7946 -0.1191 8 1 3.6513 3.6843 -0.1961 9 6 5.5688 2.8390 -0.8927 10 8 6.0113 1.8266 -1.3927 11 7 6.2329 4.0039 -1.0290 12 6 7.4896 4.0470 -1.7807 13 6 8.0256 5.4554 -1.7829 14 6 7.9073 6.3507 -2.7907 15 7 8.5237 7.4876 -2.4054 16 1 8.6007 8.3007 -2.9287 17 7 9.0327 7.2864 -1.1159 18 6 8.7311 6.0691 -0.7428 19 6 9.0874 5.4358 0.5774 20 1 8.6878 4.4237 0.6411 21 6 8.5762 6.3030 1.7581 22 6 9.5663 5.9060 2.8843 23 7 10.8634 5.7432 2.2028 24 6 12.0943 5.8561 2.7921 25 1 12.9852 5.8764 2.1819 26 6 12.1966 5.9500 4.1731 27 7 11.1393 5.7368 4.9275 28 14 13.8349 6.3791 4.9613 29 1 13.9042 7.8443 5.1930 30 1 13.9624 5.6665 6.2579 31 1 14.9409 5.9679 4.0597 32 6 10.6163 5.4333 0.7870 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3633 0.5138 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 1.6766 1.9563 0.8900 39 1 1.6766 1.9564 -0.8899 40 1 5.2121 1.5846 1.5330 41 1 3.6523 2.4424 2.0152 42 1 5.8792 4.8136 -0.6288 43 1 7.3108 3.7242 -2.8063 44 1 8.2161 3.3829 -1.3123 45 1 7.4122 6.1837 -3.7358 46 1 8.6511 7.3649 1.5239 47 1 7.5540 6.0352 2.0257 48 1 9.2610 4.9679 3.3479 49 1 9.6272 6.6972 3.6316 50 1 11.2107 5.8028 5.8926 51 1 11.0782 6.1922 0.1554 52 1 11.0220 4.4506 0.5463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070424615.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:48 Heat of formation + Delta-G solvation = 68.172443 kcal Electronic energy + Delta-G solvation = -30025.067098 eV Core-core repulsion = 26026.895159 eV Total energy + Delta-G solvation = -3998.171939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.36019 -39.98220 -37.44113 -37.27415 -34.98280 -34.10843 -33.06301 -31.33844 -30.72346 -29.08992 -27.89758 -27.49377 -26.21674 -24.60738 -23.50497 -22.20180 -22.01634 -20.79672 -20.38926 -20.15247 -19.90497 -18.69740 -18.07078 -17.19066 -16.73994 -15.98730 -15.49637 -15.34166 -14.93656 -14.76042 -14.59117 -14.44237 -14.18432 -14.07343 -13.63160 -13.51546 -13.02705 -12.86475 -12.72223 -12.50156 -12.31959 -12.26824 -11.98471 -11.88399 -11.58285 -11.56824 -11.30719 -11.11269 -10.94971 -10.83629 -10.74319 -10.53367 -10.43833 -10.22797 -10.09156 -9.98105 -9.92674 -9.76786 -9.58108 -9.14070 -9.06578 -8.61997 -8.51370 -6.71948 -5.67994 -2.99496 1.82437 2.47413 2.58583 2.86565 3.33147 3.44483 3.49763 3.51681 3.69604 4.36616 4.54496 4.55842 4.61952 4.66041 4.70171 4.80187 4.86337 4.96277 5.01449 5.12443 5.25434 5.26776 5.41023 5.42287 5.50144 5.52543 5.55962 5.57972 5.58381 5.70604 5.75283 5.78046 5.81022 5.93708 5.94643 5.97020 5.97575 6.07299 6.14941 6.41158 6.41671 6.52803 6.59634 6.72501 6.79300 6.99974 7.25251 7.51034 7.57861 7.64883 7.77826 7.84955 8.21895 8.33294 9.26742 9.88450 10.56557 11.45300 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.002390 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.059865 B =11712.630355 C =13798.054583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.120 4.120 5 H 0.117 0.883 6 C -0.146 4.146 7 C -0.191 4.191 8 H 0.121 0.879 9 C 0.542 3.458 10 O -0.545 6.545 11 N -0.719 5.719 12 C 0.202 3.798 13 C -0.262 4.262 14 C 0.075 3.925 15 N -0.481 5.481 16 H 0.438 0.562 17 N -0.278 5.278 18 C 0.121 3.879 19 C -0.027 4.027 20 H 0.088 0.912 21 C -0.132 4.132 22 C 0.174 3.826 23 N -0.601 5.601 24 C -0.224 4.224 25 H 0.075 0.925 26 C -0.009 4.009 27 N -0.919 5.919 28 Si 0.910 3.090 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.281 1.281 32 C 0.149 3.851 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.402 0.598 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.174 0.826 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.027 0.973 49 H 0.070 0.930 50 H 0.252 0.748 51 H 0.029 0.971 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.615 -3.630 -15.138 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.135 0.865 6 C -0.184 4.184 7 C -0.212 4.212 8 H 0.139 0.861 9 C 0.329 3.671 10 O -0.423 6.423 11 N -0.370 5.370 12 C 0.078 3.922 13 C -0.274 4.274 14 C -0.074 4.074 15 N -0.187 5.187 16 H 0.282 0.718 17 N -0.100 5.100 18 C -0.047 4.047 19 C -0.048 4.048 20 H 0.107 0.893 21 C -0.172 4.172 22 C 0.049 3.951 23 N -0.328 5.328 24 C -0.352 4.352 25 H 0.093 0.907 26 C -0.205 4.205 27 N -0.567 5.567 28 Si 0.741 3.259 29 H -0.217 1.217 30 H -0.218 1.218 31 H -0.206 1.206 32 C 0.022 3.978 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.236 0.764 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.191 0.809 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.088 0.912 50 H 0.062 0.938 51 H 0.047 0.953 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -19.598 -3.248 -14.993 24.888 hybrid contribution 0.389 0.486 -0.048 0.624 sum -19.209 -2.762 -15.041 24.553 Atomic orbital electron populations 1.21783 0.95937 1.01614 1.01727 1.21505 0.95578 0.96543 1.02411 1.21242 0.92025 0.97332 1.02116 1.22448 0.94538 0.95380 1.01446 0.86456 1.23127 1.03281 1.01752 0.90196 1.22288 0.97750 0.98727 1.02468 0.86113 1.19653 0.84663 0.83093 0.79730 1.90692 1.68759 1.33971 1.48849 1.46105 1.24446 1.10882 1.55559 1.19381 0.84708 0.91789 0.96289 1.19947 1.12866 0.98237 0.96379 1.22358 0.98029 0.87145 0.99916 1.46370 1.44590 1.13320 1.14377 0.71811 1.77533 1.20970 1.18311 0.93145 1.22268 0.95078 0.91056 0.96319 1.20726 0.98173 0.98213 0.87684 0.89340 1.23101 0.99010 0.99006 0.96046 1.21449 0.82558 0.99488 0.91610 1.44454 1.02543 1.82496 1.03279 1.19029 0.83634 1.42892 0.89680 0.90694 1.24797 0.97506 1.02235 0.96003 1.69954 1.27981 1.54870 1.03860 0.86123 0.83054 0.77989 0.78747 1.21700 1.21803 1.20639 1.21271 0.90692 0.97515 0.88332 0.92821 0.92775 0.92770 0.91824 0.91711 0.91601 0.91545 0.88002 0.87749 0.76381 0.91143 0.90507 0.80861 0.91568 0.92330 0.95501 0.91201 0.93790 0.95333 0.96029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.82 5.89 -26.73 -0.16 -0.97 16 3 C -0.09 -0.62 5.50 -26.73 -0.15 -0.77 16 4 C -0.12 -1.07 5.25 -90.62 -0.48 -1.55 16 5 H 0.12 1.26 7.60 -51.92 -0.39 0.86 16 6 C -0.15 -1.33 9.88 -26.73 -0.26 -1.59 16 7 C -0.19 -1.79 5.91 -91.78 -0.54 -2.33 16 8 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 9 C 0.54 6.64 7.61 -10.99 -0.08 6.55 16 10 O -0.54 -8.67 16.26 5.56 0.09 -8.58 16 11 N -0.72 -7.81 5.55 -61.48 -0.34 -8.15 16 12 C 0.20 2.36 5.65 -5.20 -0.03 2.33 16 13 C -0.26 -3.17 5.47 -105.06 -0.57 -3.75 16 14 C 0.07 0.71 11.90 -17.22 -0.20 0.51 16 15 N -0.48 -5.20 7.36 30.44 0.22 -4.98 16 16 H 0.44 3.22 8.96 -182.61 -1.64 1.58 16 17 N -0.28 -4.41 12.33 33.67 0.42 -3.99 16 18 C 0.12 1.88 5.76 -82.40 -0.47 1.40 16 19 C -0.03 -0.49 3.36 -89.94 -0.30 -0.79 16 20 H 0.09 1.53 7.31 -51.93 -0.38 1.15 16 21 C -0.13 -2.54 6.53 -24.47 -0.16 -2.70 16 22 C 0.17 4.28 5.44 -2.41 -0.01 4.27 16 23 N -0.60 -15.92 3.39 -169.94 -0.58 -16.50 16 24 C -0.22 -6.45 10.24 -15.06 -0.15 -6.60 16 25 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 26 C -0.01 -0.26 5.40 -17.43 -0.09 -0.36 16 27 N -0.92 -27.42 10.68 55.49 0.59 -26.82 16 28 Si 0.91 22.60 29.56 -169.99 -5.03 17.57 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 31 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 32 C 0.15 3.29 6.83 -3.07 -0.02 3.27 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.42 7.88 -51.93 -0.41 0.01 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 42 H 0.40 3.78 8.46 -40.82 -0.35 3.44 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.05 7.76 -51.93 -0.40 0.64 16 45 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.07 1.32 7.88 -51.93 -0.41 0.91 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 49 H 0.07 1.91 6.91 -51.93 -0.36 1.55 16 50 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.03 0.66 7.68 -51.93 -0.40 0.26 16 52 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 423.30 15.07 6.38 6.38 Total: -1.00 -35.03 423.30 -11.76 -46.79 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -10.19 Total: 1.87 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -3.33 Total: -3.59 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.31 Total: -60.44 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -35.03 -11.76 -46.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070424615.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.962 kcal (2) G-P(sol) polarization free energy of solvation -35.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds