Wall clock time and date at job start Wed Apr 1 2020 04:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 C 1.52999 * 109.47539 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.55655 * 29.30928 * 4 3 2 6 6 C 1.53072 * 117.49578 * 243.60827 * 4 3 2 7 7 C 1.52992 * 117.50070 * 175.00017 * 4 3 2 8 8 H 1.08993 * 117.50318 * 359.97438 * 7 4 3 9 9 C 1.50706 * 117.49686 * 214.97619 * 7 4 3 10 10 O 1.21279 * 119.99990 * 0.09077 * 9 7 4 11 11 N 1.34783 * 119.99788 * 180.08526 * 9 7 4 12 12 C 1.47018 * 125.64489 * 180.02562 * 11 9 7 13 13 C 1.54325 * 107.27160 * 178.90861 * 12 11 9 14 14 H 1.09004 * 110.72066 * 96.34481 * 13 12 11 15 15 C 1.50696 * 110.72499 * 219.44796 * 13 12 11 16 16 C 1.34668 * 125.98675 * 33.53844 * 15 13 12 17 17 N 1.36885 * 106.81739 * 180.02562 * 16 15 13 18 18 C 1.46503 * 126.39872 * 179.74288 * 17 16 15 19 19 C 1.35043 * 107.20505 * 0.02562 * 17 16 15 20 20 N 1.30503 * 108.70077 * 359.97438 * 19 17 16 21 21 C 1.55166 * 102.93979 * 337.80880 * 13 12 11 22 22 H 1.08993 * 111.00180 * 277.42710 * 21 13 12 23 23 N 1.46496 * 111.00090 * 153.57575 * 21 13 12 24 24 C 1.36942 * 119.99838 * 155.00488 * 23 21 13 25 25 H 1.08004 * 119.99640 * 359.97438 * 24 23 21 26 26 C 1.38808 * 120.00189 * 179.97438 * 24 23 21 27 27 N 1.31619 * 119.99877 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 120.00071 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47028 * 359.97438 * 28 26 24 30 30 H 1.48500 * 109.46909 * 119.99802 * 28 26 24 31 31 H 1.48504 * 109.47138 * 239.99622 * 28 26 24 32 32 C 1.47421 * 125.64889 * 359.96385 * 11 9 7 33 33 H 1.08998 * 109.47593 * 60.00517 * 1 2 3 34 34 H 1.09005 * 109.47070 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47578 * 299.99620 * 1 2 3 36 36 H 1.08999 * 109.47350 * 239.99952 * 2 1 3 37 37 H 1.08999 * 109.47032 * 120.00000 * 2 1 3 38 38 H 1.08999 * 109.47158 * 59.99834 * 3 2 1 39 39 H 1.09005 * 109.47404 * 300.00269 * 3 2 1 40 40 H 1.08994 * 117.52005 * 145.03729 * 6 4 3 41 41 H 1.09001 * 117.51375 * 359.97438 * 6 4 3 42 42 H 1.08997 * 109.88315 * 59.49051 * 12 11 9 43 43 H 1.09001 * 110.01448 * 298.39932 * 12 11 9 44 44 H 1.07999 * 126.59400 * 359.97438 * 16 15 13 45 45 H 1.09003 * 109.47010 * 89.99789 * 18 17 16 46 46 H 1.08995 * 109.46612 * 209.99554 * 18 17 16 47 47 H 1.09001 * 109.46803 * 329.99450 * 18 17 16 48 48 H 1.07995 * 125.65431 * 180.02562 * 19 17 16 49 49 H 0.96997 * 120.00608 * 334.99192 * 23 21 13 50 50 H 0.97003 * 119.99887 * 180.02562 * 27 26 24 51 51 H 1.09002 * 110.36749 * 323.00298 * 32 11 9 52 52 H 1.09000 * 110.36504 * 85.32340 * 32 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 4.0404 0.5852 -0.4804 6 6 4.2760 2.0465 1.2172 7 6 4.2762 2.7946 -0.1175 8 1 3.6511 3.6840 -0.1962 9 6 5.5695 2.8388 -0.8901 10 8 6.0114 1.8267 -1.3911 11 7 6.2348 4.0033 -1.0243 12 6 7.5008 4.1882 -1.7485 13 6 7.8662 5.6848 -1.6578 14 1 8.5657 5.8622 -0.8408 15 6 8.4389 6.1740 -2.9630 16 6 8.0872 5.7471 -4.1909 17 7 8.8480 6.4485 -5.0870 18 6 8.8151 6.3171 -6.5457 19 6 9.6390 7.2797 -4.3750 20 7 9.3887 7.1102 -3.1054 21 6 6.4987 6.3596 -1.3711 22 1 5.9368 6.5107 -2.2927 23 7 6.6776 7.6246 -0.6541 24 6 5.7246 8.6039 -0.7452 25 1 4.8415 8.4437 -1.3459 26 6 5.8938 9.8022 -0.0654 27 7 6.9698 9.9972 0.6670 28 14 4.5942 11.1383 -0.1903 29 1 3.4909 10.6750 -1.0695 30 1 4.0584 11.4355 1.1624 31 1 5.2007 12.3668 -0.7633 32 6 5.8130 5.3027 -0.4702 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5138 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 1.6765 1.9563 0.8900 39 1 1.6765 1.9564 -0.8900 40 1 5.2111 1.5865 1.5364 41 1 3.6506 2.4439 2.0166 42 1 7.3763 3.8996 -2.7922 43 1 8.2849 3.5866 -1.2888 44 1 7.3477 4.9953 -4.4239 45 1 8.0806 7.0098 -6.9565 46 1 9.7994 6.5473 -6.9534 47 1 8.5410 5.2964 -6.8125 48 1 10.3589 7.9709 -4.7877 49 1 7.4708 7.7685 -0.1147 50 1 7.0878 10.8345 1.1424 51 1 4.7290 5.4041 -0.5240 52 1 6.1537 5.4043 0.5602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070531070.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:33 Heat of formation + Delta-G solvation = 60.851828 kcal Electronic energy + Delta-G solvation = -30493.686248 eV Core-core repulsion = 26495.196864 eV Total energy + Delta-G solvation = -3998.489385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.83594 -40.00810 -38.09272 -36.71372 -34.05699 -33.99348 -33.89612 -31.77708 -30.62388 -28.42863 -27.66648 -27.40936 -26.69912 -24.62966 -23.57327 -22.39224 -21.94989 -21.04496 -20.70148 -20.54264 -19.28528 -18.70820 -17.47064 -17.03615 -16.64128 -15.73525 -15.59995 -15.49035 -15.25653 -14.63006 -14.39523 -14.16644 -14.08883 -13.71738 -13.42627 -13.40358 -13.15364 -13.11394 -12.94528 -12.72006 -12.66855 -12.47576 -12.33979 -12.11347 -12.00189 -11.46758 -11.38207 -11.25177 -11.17037 -10.98931 -10.84284 -10.78188 -10.39736 -10.26173 -10.05350 -10.03602 -9.77169 -9.59175 -9.54778 -9.26166 -8.98065 -8.34041 -8.03097 -6.98368 -5.76984 -3.06998 2.27650 2.68328 2.95326 3.15675 3.42003 3.47397 3.47869 3.50004 3.84428 4.42485 4.55157 4.63335 4.70231 4.73856 4.76494 4.90704 4.98731 5.00153 5.01397 5.06123 5.18331 5.21190 5.23728 5.30153 5.37961 5.39489 5.55634 5.60663 5.63983 5.65688 5.68429 5.70889 5.76303 5.85545 5.87401 5.93586 5.95673 6.05425 6.06381 6.08666 6.28418 6.29810 6.36569 6.42893 6.47413 6.57520 6.88385 7.03492 7.41261 7.68557 7.81504 8.38444 8.40893 8.44664 9.51957 10.06696 10.42142 11.44754 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007109 B = 0.003261 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3937.530798 B = 8585.549916 C =11371.147408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.120 4.120 5 H 0.116 0.884 6 C -0.147 4.147 7 C -0.183 4.183 8 H 0.124 0.876 9 C 0.556 3.444 10 O -0.557 6.557 11 N -0.608 5.608 12 C 0.122 3.878 13 C -0.030 4.030 14 H 0.097 0.903 15 C 0.040 3.960 16 C -0.065 4.065 17 N -0.468 5.468 18 C 0.076 3.924 19 C 0.177 3.823 20 N -0.470 5.470 21 C 0.188 3.812 22 H 0.066 0.934 23 N -0.703 5.703 24 C -0.244 4.244 25 H 0.070 0.930 26 C -0.007 4.007 27 N -0.924 5.924 28 Si 0.904 3.096 29 H -0.281 1.281 30 H -0.291 1.291 31 H -0.292 1.292 32 C 0.073 3.927 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.169 0.831 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.201 0.799 49 H 0.390 0.610 50 H 0.255 0.745 51 H 0.071 0.929 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 -15.651 -8.476 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.128 4.128 4 C -0.139 4.139 5 H 0.134 0.866 6 C -0.185 4.185 7 C -0.204 4.204 8 H 0.142 0.858 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.340 5.340 12 C -0.002 4.002 13 C -0.051 4.051 14 H 0.115 0.885 15 C -0.090 4.090 16 C -0.196 4.196 17 N -0.152 5.152 18 C -0.067 4.067 19 C -0.106 4.106 20 N -0.187 5.187 21 C 0.074 3.926 22 H 0.084 0.916 23 N -0.342 5.342 24 C -0.375 4.375 25 H 0.088 0.912 26 C -0.204 4.204 27 N -0.572 5.572 28 Si 0.735 3.265 29 H -0.206 1.206 30 H -0.218 1.218 31 H -0.219 1.219 32 C -0.053 4.053 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.186 0.814 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.217 0.783 49 H 0.224 0.776 50 H 0.065 0.935 51 H 0.090 0.910 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.129 -15.666 -8.286 17.996 hybrid contribution -0.777 0.760 -0.646 1.264 sum -3.907 -14.906 -8.931 17.811 Atomic orbital electron populations 1.21784 0.95961 1.01492 1.01842 1.21494 0.95557 0.96619 1.02220 1.21246 0.92065 0.97186 1.02321 1.22437 0.94522 0.95602 1.01305 0.86632 1.23083 1.02939 1.02023 0.90420 1.22263 0.97633 0.98584 1.01898 0.85810 1.19289 0.84460 0.81746 0.79975 1.90647 1.69245 1.33630 1.50086 1.48408 1.23627 1.08806 1.53193 1.21887 0.85707 0.95797 0.96790 1.20765 0.98531 0.92150 0.93633 0.88482 1.20123 0.97900 0.97684 0.93260 1.22322 1.03264 1.04436 0.89608 1.45335 1.31197 1.31425 1.07225 1.21963 1.03734 1.03575 0.77423 1.24955 0.99642 0.98766 0.87195 1.70200 1.15911 1.16439 1.16147 1.21273 0.91291 0.86137 0.93910 0.91616 1.42235 1.24700 1.11027 1.56222 1.19233 0.99564 0.94103 1.24635 0.91205 1.24733 0.97646 0.98002 0.99976 1.69682 1.27265 1.25523 1.34694 0.86171 0.80830 0.82274 0.77183 1.20607 1.21815 1.21905 1.23577 1.00514 0.81647 0.99608 0.92748 0.92869 0.92746 0.91899 0.91865 0.91556 0.91405 0.88457 0.87843 0.91556 0.91596 0.81388 0.90790 0.89727 0.89999 0.78251 0.77566 0.93487 0.91036 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -0.99 5.89 -26.73 -0.16 -1.15 16 3 C -0.09 -0.83 5.50 -26.73 -0.15 -0.98 16 4 C -0.12 -1.35 5.25 -90.59 -0.48 -1.83 16 5 H 0.12 1.45 7.60 -51.93 -0.39 1.06 16 6 C -0.15 -1.64 9.88 -26.69 -0.26 -1.91 16 7 C -0.18 -2.38 5.25 -91.77 -0.48 -2.86 16 8 H 0.12 1.53 7.07 -51.93 -0.37 1.16 16 9 C 0.56 8.97 7.63 -10.98 -0.08 8.89 16 10 O -0.56 -10.40 16.58 5.56 0.09 -10.31 16 11 N -0.61 -9.75 3.33 -170.54 -0.57 -10.31 16 12 C 0.12 1.91 6.41 -3.07 -0.02 1.89 16 13 C -0.03 -0.52 3.11 -89.93 -0.28 -0.80 16 14 H 0.10 1.82 8.01 -51.93 -0.42 1.41 16 15 C 0.04 0.71 6.10 -82.85 -0.51 0.20 16 16 C -0.06 -0.95 10.53 -16.56 -0.17 -1.12 16 17 N -0.47 -5.93 3.15 -125.99 -0.40 -6.33 16 18 C 0.08 0.57 11.18 59.85 0.67 1.23 16 19 C 0.18 2.58 12.56 -90.37 -1.14 1.45 16 20 N -0.47 -8.88 11.25 -10.88 -0.12 -9.00 16 21 C 0.19 3.64 3.15 -65.79 -0.21 3.43 16 22 H 0.07 1.33 7.99 -51.93 -0.41 0.92 16 23 N -0.70 -17.09 5.24 -51.36 -0.27 -17.36 16 24 C -0.24 -6.57 9.96 -15.06 -0.15 -6.72 16 25 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 26 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 27 N -0.92 -27.57 13.06 55.49 0.72 -26.85 16 28 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 30 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 31 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 32 C 0.07 1.23 6.38 -2.54 -0.02 1.22 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 0.99 8.03 -51.93 -0.42 0.57 16 42 H 0.07 0.99 6.12 -51.93 -0.32 0.67 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.17 2.12 7.10 -52.49 -0.37 1.75 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 49 H 0.39 10.32 7.77 -40.82 -0.32 10.00 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.07 1.16 7.00 -51.93 -0.36 0.80 16 52 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 424.17 15.07 6.39 6.39 Total: -1.00 -34.15 424.17 -11.16 -45.31 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -8.83 Total: 11.51 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.16 Total: -0.09 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -0.63 Total: -69.85 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.15 -11.16 -45.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070531070.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.165 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds