Wall clock time and date at job start Wed Apr 1 2020 04:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 C 1.53000 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55153 * 29.33261 * 4 3 2 6 6 C 1.52993 * 117.51572 * 243.62368 * 4 3 2 7 7 C 1.52998 * 60.00120 * 252.52491 * 6 4 3 8 8 H 1.08998 * 117.51766 * 107.48836 * 7 6 4 9 9 C 1.50703 * 117.49656 * 252.51324 * 7 6 4 10 10 O 1.21277 * 120.00112 * 68.62554 * 9 7 6 11 11 N 1.34778 * 119.99948 * 248.62154 * 9 7 6 12 12 C 1.48309 * 127.76914 * 179.97438 * 11 9 7 13 13 C 1.54394 * 104.53654 * 219.52293 * 12 11 9 14 14 H 1.08998 * 110.34403 * 95.18145 * 13 12 11 15 15 C 1.50706 * 110.33904 * 217.33653 * 13 12 11 16 16 C 1.34665 * 126.59040 * 82.14885 * 15 13 12 17 17 N 1.34127 * 108.01668 * 179.69266 * 16 15 13 18 18 C 1.30500 * 109.25894 * 0.26753 * 17 16 15 19 19 N 1.35045 * 108.69584 * 359.97438 * 18 17 16 20 20 C 1.46504 * 126.39317 * 180.02562 * 19 18 17 21 21 C 1.54287 * 105.05091 * 336.25609 * 13 12 11 22 22 H 1.08996 * 110.34292 * 240.97312 * 21 13 12 23 23 N 1.46501 * 110.33982 * 118.81986 * 21 13 12 24 24 C 1.36938 * 119.99756 * 155.00184 * 23 21 13 25 25 H 1.07998 * 119.99807 * 359.97438 * 24 23 21 26 26 C 1.38814 * 119.99925 * 180.02562 * 24 23 21 27 27 N 1.31619 * 119.99770 * 359.97438 * 26 24 23 28 28 Si 1.86793 * 120.00155 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.47113 * 359.97438 * 28 26 24 30 30 H 1.48494 * 109.47188 * 119.99750 * 28 26 24 31 31 H 1.48508 * 109.47077 * 240.00066 * 28 26 24 32 32 C 1.48149 * 127.83920 * 0.02664 * 11 9 7 33 33 H 1.08999 * 109.47075 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47168 * 300.00305 * 1 2 3 35 35 H 1.08999 * 109.46765 * 60.00587 * 1 2 3 36 36 H 1.09001 * 109.47168 * 239.99695 * 2 1 3 37 37 H 1.09003 * 109.47219 * 119.99580 * 2 1 3 38 38 H 1.09001 * 109.47278 * 59.99762 * 3 2 1 39 39 H 1.09003 * 109.46660 * 299.99922 * 3 2 1 40 40 H 1.09002 * 117.49631 * 145.03484 * 6 4 3 41 41 H 1.09006 * 117.50211 * 0.02562 * 6 4 3 42 42 H 1.09002 * 110.38385 * 100.79771 * 12 11 9 43 43 H 1.08995 * 110.50812 * 338.30924 * 12 11 9 44 44 H 1.08002 * 125.99463 * 359.96185 * 16 15 13 45 45 H 1.07994 * 125.64966 * 180.02562 * 18 17 16 46 46 H 1.09000 * 109.46904 * 89.97725 * 20 19 18 47 47 H 1.08997 * 109.46696 * 209.98161 * 20 19 18 48 48 H 1.09003 * 109.46818 * 329.97976 * 20 19 18 49 49 H 0.97000 * 120.00179 * 334.99976 * 23 21 13 50 50 H 0.96999 * 120.00215 * 180.02562 * 27 26 24 51 51 H 1.09003 * 110.40495 * 21.62358 * 32 11 9 52 52 H 1.08998 * 110.40491 * 259.20004 * 32 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0403 0.5851 -0.4808 6 6 4.2764 2.0454 1.2165 7 6 4.2765 2.7944 -0.1176 8 1 3.6513 3.6839 -0.1958 9 6 5.5694 2.8386 -0.8907 10 8 6.0118 1.8262 -1.3907 11 7 6.2339 4.0033 -1.0264 12 6 7.5097 4.2430 -1.7436 13 6 8.2770 5.2389 -0.8474 14 1 8.9621 4.7054 -0.1885 15 6 9.0317 6.2313 -1.6939 16 6 8.5323 7.3454 -2.2621 17 7 9.5268 7.9549 -2.9243 18 6 10.6221 7.2579 -2.7927 19 7 10.3561 6.1725 -2.0346 20 6 11.3086 5.1299 -1.6447 21 6 7.1884 5.9561 -0.0222 22 1 7.2008 7.0265 -0.2277 23 7 7.3891 5.7106 1.4081 24 6 6.9100 6.6029 2.3298 25 1 6.3846 7.4878 2.0022 26 6 7.1006 6.3706 3.6850 27 7 7.7414 5.2924 4.0841 28 14 6.4477 7.5881 4.9422 29 1 5.7707 8.7085 4.2411 30 1 5.4784 6.9049 5.8359 31 1 7.5757 8.1192 5.7491 32 6 5.8563 5.3327 -0.4924 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 -0.3633 0.5137 -0.8900 36 1 1.8934 -0.5139 -0.8900 37 1 1.8934 -0.5138 0.8900 38 1 1.6767 1.9564 0.8900 39 1 1.6767 1.9563 -0.8900 40 1 5.2115 1.5846 1.5350 41 1 3.6511 2.4419 2.0165 42 1 7.3181 4.6825 -2.7226 43 1 8.0705 3.3140 -1.8462 44 1 7.5111 7.6902 -2.1928 45 1 11.5824 7.5081 -3.2188 46 1 11.7821 5.4044 -0.7021 47 1 10.7819 4.1832 -1.5246 48 1 12.0704 5.0264 -2.4174 49 1 7.8613 4.9160 1.7022 50 1 7.8744 5.1299 5.0310 51 1 5.1700 5.2239 0.3474 52 1 5.4063 5.9429 -1.2755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070686906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:38 Heat of formation + Delta-G solvation = 60.402665 kcal Electronic energy + Delta-G solvation = -31031.455228 eV Core-core repulsion = 27032.946366 eV Total energy + Delta-G solvation = -3998.508862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.00385 -39.89424 -38.08134 -36.65138 -33.99318 -33.90326 -33.87431 -32.17455 -30.67975 -28.20335 -27.50554 -27.35027 -26.89670 -24.85570 -23.63651 -22.34208 -21.86877 -21.60510 -20.48302 -20.42693 -19.32370 -18.60631 -17.53188 -16.89162 -16.71643 -15.73149 -15.56466 -15.48986 -15.20494 -14.76852 -14.50569 -14.37875 -13.75058 -13.61031 -13.49085 -13.44043 -13.28529 -13.09953 -12.89607 -12.74249 -12.71364 -12.30925 -12.22986 -12.03816 -11.86125 -11.63072 -11.35760 -11.17932 -11.03454 -10.91490 -10.87777 -10.84662 -10.71265 -10.14120 -10.09975 -9.89627 -9.83240 -9.75003 -9.52466 -9.41979 -9.14406 -8.45392 -8.12342 -7.07920 -5.88031 -3.18409 2.16798 2.78165 2.87462 3.18308 3.34876 3.36486 3.43454 3.44901 4.00811 4.46427 4.53170 4.69896 4.73342 4.80369 4.83023 4.90832 4.94590 5.03383 5.07889 5.10649 5.12123 5.22727 5.34384 5.35386 5.43296 5.48970 5.49340 5.55151 5.60950 5.64023 5.72491 5.75818 5.78405 5.85739 5.89640 5.91003 5.98465 6.08896 6.12196 6.16711 6.18801 6.21963 6.33938 6.41719 6.44783 6.56765 6.74960 6.92740 7.31927 7.61190 7.87343 8.22659 8.28683 8.46222 9.41069 9.94113 10.28885 11.33877 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007214 B = 0.003691 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.300158 B = 7584.804779 C =10508.666039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.124 4.124 5 H 0.114 0.886 6 C -0.137 4.137 7 C -0.180 4.180 8 H 0.120 0.880 9 C 0.568 3.432 10 O -0.558 6.558 11 N -0.609 5.609 12 C 0.120 3.880 13 C -0.039 4.039 14 H 0.089 0.911 15 C 0.004 3.996 16 C -0.023 4.023 17 N -0.494 5.494 18 C 0.170 3.830 19 N -0.458 5.458 20 C 0.071 3.929 21 C 0.180 3.820 22 H 0.078 0.922 23 N -0.712 5.712 24 C -0.245 4.245 25 H 0.074 0.926 26 C -0.007 4.007 27 N -0.929 5.929 28 Si 0.905 3.095 29 H -0.279 1.279 30 H -0.291 1.291 31 H -0.292 1.292 32 C 0.072 3.928 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.168 0.832 45 H 0.201 0.799 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.091 0.909 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 -5.513 -11.500 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.127 4.127 4 C -0.143 4.143 5 H 0.132 0.868 6 C -0.174 4.174 7 C -0.201 4.201 8 H 0.138 0.862 9 C 0.358 3.642 10 O -0.437 6.437 11 N -0.341 5.341 12 C -0.004 4.004 13 C -0.061 4.061 14 H 0.108 0.892 15 C -0.111 4.111 16 C -0.171 4.171 17 N -0.212 5.212 18 C -0.111 4.111 19 N -0.141 5.141 20 C -0.072 4.072 21 C 0.067 3.933 22 H 0.095 0.905 23 N -0.352 5.352 24 C -0.376 4.376 25 H 0.092 0.908 26 C -0.203 4.203 27 N -0.576 5.576 28 Si 0.736 3.264 29 H -0.204 1.204 30 H -0.218 1.218 31 H -0.219 1.219 32 C -0.054 4.054 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.186 0.814 45 H 0.217 0.783 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.110 0.890 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.975 -5.363 -12.034 13.507 hybrid contribution 0.172 -0.170 1.411 1.432 sum -2.803 -5.533 -10.623 12.301 Atomic orbital electron populations 1.21782 0.96028 1.01443 1.01762 1.21498 0.95475 0.96706 1.02252 1.21230 0.92190 0.97107 1.02144 1.22443 0.94408 0.95445 1.01974 0.86779 1.23051 1.02933 1.01262 0.90173 1.22151 0.97247 0.98253 1.02443 0.86180 1.19235 0.84388 0.81305 0.79261 1.90641 1.69313 1.33451 1.50306 1.48796 1.23441 1.08563 1.53334 1.22275 0.84905 0.98424 0.94767 1.20883 0.96675 0.93637 0.94856 0.89239 1.21008 0.83974 1.01079 1.05021 1.21989 0.99294 0.94186 1.01642 1.70242 0.98991 1.29315 1.22650 1.24806 1.00134 0.86485 0.99720 1.45261 1.08947 1.20610 1.39322 1.22039 0.92534 0.90634 1.01998 1.21174 0.89168 0.97380 0.85587 0.90456 1.42449 1.67430 1.27043 0.98274 1.19272 1.29732 1.01800 0.86780 0.90827 1.24728 1.00814 0.97755 0.97016 1.69670 1.46178 1.27010 1.14756 0.86159 0.78120 0.80407 0.81737 1.20379 1.21816 1.21878 1.23620 1.01213 0.82228 0.98344 0.92901 0.92744 0.92832 0.91953 0.91786 0.91549 0.91618 0.88270 0.87760 0.91051 0.90541 0.81443 0.78252 0.90272 0.89639 0.89585 0.78152 0.93471 0.89021 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.13 5.89 -26.73 -0.16 -1.29 16 3 C -0.09 -0.93 5.50 -26.73 -0.15 -1.08 16 4 C -0.12 -1.61 5.25 -90.62 -0.48 -2.09 16 5 H 0.11 1.62 7.60 -51.93 -0.39 1.23 16 6 C -0.14 -1.96 9.88 -26.74 -0.26 -2.23 16 7 C -0.18 -2.65 5.02 -91.77 -0.46 -3.11 16 8 H 0.12 1.61 7.65 -51.93 -0.40 1.22 16 9 C 0.57 9.88 7.70 -10.98 -0.08 9.80 16 10 O -0.56 -11.13 16.53 5.56 0.09 -11.03 16 11 N -0.61 -9.91 3.32 -169.15 -0.56 -10.48 16 12 C 0.12 1.79 6.59 -2.31 -0.02 1.78 16 13 C -0.04 -0.60 2.95 -90.36 -0.27 -0.87 16 14 H 0.09 1.51 7.21 -51.93 -0.37 1.14 16 15 C 0.00 0.06 5.78 -81.60 -0.47 -0.41 16 16 C -0.02 -0.36 10.67 -17.81 -0.19 -0.55 16 17 N -0.49 -7.79 11.25 -14.67 -0.17 -7.96 16 18 C 0.17 2.19 12.56 -90.37 -1.14 1.05 16 19 N -0.46 -5.89 3.15 -121.36 -0.38 -6.27 16 20 C 0.07 0.65 10.84 59.85 0.65 1.30 16 21 C 0.18 3.19 3.20 -66.52 -0.21 2.98 16 22 H 0.08 1.40 6.38 -51.93 -0.33 1.07 16 23 N -0.71 -16.20 5.11 -52.06 -0.27 -16.47 16 24 C -0.25 -6.26 9.96 -15.06 -0.15 -6.41 16 25 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 26 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 27 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 28 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 32 C 0.07 1.14 6.54 -2.39 -0.02 1.13 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.10 1.39 8.03 -51.93 -0.42 0.98 16 42 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 43 H 0.08 1.17 7.89 -51.93 -0.41 0.76 16 44 H 0.17 2.38 7.50 -52.49 -0.39 1.99 16 45 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.38 9.59 7.56 -40.82 -0.31 9.28 16 50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.09 1.60 7.13 -51.93 -0.37 1.23 16 52 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 423.03 15.07 6.38 6.38 Total: -1.00 -32.30 423.03 -11.14 -43.44 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -8.81 Total: 13.02 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -3.13 Total: -1.13 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -0.65 Total: -67.01 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -32.30 -11.14 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070686906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.841 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds