Wall clock time and date at job start Wed Apr 1 2020 04:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 C 1.53000 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55153 * 29.33261 * 4 3 2 6 6 C 1.52993 * 117.51572 * 243.62368 * 4 3 2 7 7 C 1.52998 * 60.00120 * 252.52491 * 6 4 3 8 8 H 1.08998 * 117.51766 * 107.48836 * 7 6 4 9 9 C 1.50703 * 117.49656 * 252.51324 * 7 6 4 10 10 O 1.21277 * 120.00112 * 68.62554 * 9 7 6 11 11 N 1.34778 * 119.99948 * 248.62154 * 9 7 6 12 12 C 1.48309 * 127.76914 * 179.97438 * 11 9 7 13 13 C 1.54394 * 104.53654 * 219.52293 * 12 11 9 14 14 H 1.08998 * 110.34403 * 95.18145 * 13 12 11 15 15 C 1.50706 * 110.33904 * 217.33653 * 13 12 11 16 16 C 1.34665 * 126.59040 * 82.14885 * 15 13 12 17 17 N 1.34127 * 108.01668 * 179.69266 * 16 15 13 18 18 C 1.30500 * 109.25894 * 0.26753 * 17 16 15 19 19 N 1.35045 * 108.69584 * 359.97438 * 18 17 16 20 20 C 1.46504 * 126.39317 * 180.02562 * 19 18 17 21 21 C 1.54287 * 105.05091 * 336.25609 * 13 12 11 22 22 H 1.08996 * 110.34292 * 240.97312 * 21 13 12 23 23 N 1.46501 * 110.33982 * 118.81986 * 21 13 12 24 24 C 1.36938 * 119.99756 * 155.00184 * 23 21 13 25 25 H 1.07998 * 119.99807 * 359.97438 * 24 23 21 26 26 C 1.38814 * 119.99925 * 180.02562 * 24 23 21 27 27 N 1.31619 * 119.99770 * 359.97438 * 26 24 23 28 28 Si 1.86793 * 120.00155 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.47113 * 359.97438 * 28 26 24 30 30 H 1.48494 * 109.47188 * 119.99750 * 28 26 24 31 31 H 1.48508 * 109.47077 * 240.00066 * 28 26 24 32 32 C 1.48149 * 127.83920 * 0.02664 * 11 9 7 33 33 H 1.08999 * 109.47075 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47168 * 300.00305 * 1 2 3 35 35 H 1.08999 * 109.46765 * 60.00587 * 1 2 3 36 36 H 1.09001 * 109.47168 * 239.99695 * 2 1 3 37 37 H 1.09003 * 109.47219 * 119.99580 * 2 1 3 38 38 H 1.09001 * 109.47278 * 59.99762 * 3 2 1 39 39 H 1.09003 * 109.46660 * 299.99922 * 3 2 1 40 40 H 1.09002 * 117.49631 * 145.03484 * 6 4 3 41 41 H 1.09006 * 117.50211 * 0.02562 * 6 4 3 42 42 H 1.09002 * 110.38385 * 100.79771 * 12 11 9 43 43 H 1.08995 * 110.50812 * 338.30924 * 12 11 9 44 44 H 1.08002 * 125.99463 * 359.96185 * 16 15 13 45 45 H 1.07994 * 125.64966 * 180.02562 * 18 17 16 46 46 H 1.09000 * 109.46904 * 89.97725 * 20 19 18 47 47 H 1.08997 * 109.46696 * 209.98161 * 20 19 18 48 48 H 1.09003 * 109.46818 * 329.97976 * 20 19 18 49 49 H 0.97000 * 120.00179 * 334.99976 * 23 21 13 50 50 H 0.96999 * 120.00215 * 180.02562 * 27 26 24 51 51 H 1.09003 * 110.40495 * 21.62358 * 32 11 9 52 52 H 1.08998 * 110.40491 * 259.20004 * 32 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0403 0.5851 -0.4808 6 6 4.2764 2.0454 1.2165 7 6 4.2765 2.7944 -0.1176 8 1 3.6513 3.6839 -0.1958 9 6 5.5694 2.8386 -0.8907 10 8 6.0118 1.8262 -1.3907 11 7 6.2339 4.0033 -1.0264 12 6 7.5097 4.2430 -1.7436 13 6 8.2770 5.2389 -0.8474 14 1 8.9621 4.7054 -0.1885 15 6 9.0317 6.2313 -1.6939 16 6 8.5323 7.3454 -2.2621 17 7 9.5268 7.9549 -2.9243 18 6 10.6221 7.2579 -2.7927 19 7 10.3561 6.1725 -2.0346 20 6 11.3086 5.1299 -1.6447 21 6 7.1884 5.9561 -0.0222 22 1 7.2008 7.0265 -0.2277 23 7 7.3891 5.7106 1.4081 24 6 6.9100 6.6029 2.3298 25 1 6.3846 7.4878 2.0022 26 6 7.1006 6.3706 3.6850 27 7 7.7414 5.2924 4.0841 28 14 6.4477 7.5881 4.9422 29 1 5.7707 8.7085 4.2411 30 1 5.4784 6.9049 5.8359 31 1 7.5757 8.1192 5.7491 32 6 5.8563 5.3327 -0.4924 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 -0.3633 0.5137 -0.8900 36 1 1.8934 -0.5139 -0.8900 37 1 1.8934 -0.5138 0.8900 38 1 1.6767 1.9564 0.8900 39 1 1.6767 1.9563 -0.8900 40 1 5.2115 1.5846 1.5350 41 1 3.6511 2.4419 2.0165 42 1 7.3181 4.6825 -2.7226 43 1 8.0705 3.3140 -1.8462 44 1 7.5111 7.6902 -2.1928 45 1 11.5824 7.5081 -3.2188 46 1 11.7821 5.4044 -0.7021 47 1 10.7819 4.1832 -1.5246 48 1 12.0704 5.0264 -2.4174 49 1 7.8613 4.9160 1.7022 50 1 7.8744 5.1299 5.0310 51 1 5.1700 5.2239 0.3474 52 1 5.4063 5.9429 -1.2755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070686906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:36 Heat of formation + Delta-G solvation = 43.491226 kcal Electronic energy + Delta-G solvation = -31032.188563 eV Core-core repulsion = 27032.946366 eV Total energy + Delta-G solvation = -3999.242197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.08095 -41.21322 -39.36762 -37.89576 -35.75261 -34.90862 -34.73462 -33.60615 -32.36911 -29.33761 -29.03635 -28.24650 -27.77607 -26.30241 -25.29817 -23.57828 -22.80704 -22.70335 -21.69656 -21.43672 -20.63576 -19.87757 -19.14232 -18.29264 -17.94334 -17.09508 -16.75791 -16.58460 -16.43352 -15.99798 -15.70520 -15.55579 -15.26871 -15.13333 -14.72060 -14.56166 -14.48702 -14.15837 -13.92036 -13.72831 -13.66426 -13.42996 -13.30901 -13.26997 -13.04550 -12.98263 -12.84173 -12.54605 -12.48675 -12.19794 -12.16698 -11.95171 -11.94822 -11.72469 -11.66732 -11.21315 -11.08515 -10.97848 -10.88862 -10.79454 -10.45372 -9.85860 -9.31470 -8.91784 -7.92205 -5.20943 1.08781 1.44504 1.49237 1.51223 1.59521 1.83207 2.00009 2.23977 2.57398 2.85529 3.35136 3.39011 3.53235 3.67775 3.78180 3.80655 3.84639 3.92182 4.00522 4.08043 4.11877 4.19711 4.21070 4.29185 4.33723 4.37890 4.39745 4.49827 4.58428 4.63850 4.66187 4.69452 4.74759 4.81501 4.87384 4.89821 4.92639 4.95373 5.03859 5.05626 5.08475 5.20469 5.34698 5.37060 5.41661 5.45217 5.52363 5.57844 5.79757 6.27719 6.35562 6.52246 7.09390 7.15481 7.35657 8.06197 8.30292 9.30891 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007214 B = 0.003691 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.300158 B = 7584.804779 C =10508.666039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.104 4.104 5 H 0.100 0.900 6 C -0.145 4.145 7 C -0.189 4.189 8 H 0.137 0.863 9 C 0.560 3.440 10 O -0.590 6.590 11 N -0.610 5.610 12 C 0.125 3.875 13 C -0.020 4.020 14 H 0.072 0.928 15 C -0.012 4.012 16 C -0.035 4.035 17 N -0.530 5.530 18 C 0.182 3.818 19 N -0.460 5.460 20 C 0.065 3.935 21 C 0.176 3.824 22 H 0.079 0.921 23 N -0.722 5.722 24 C -0.233 4.233 25 H 0.082 0.918 26 C -0.067 4.067 27 N -0.967 5.967 28 Si 0.962 3.038 29 H -0.263 1.263 30 H -0.296 1.296 31 H -0.301 1.301 32 C 0.082 3.918 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.173 0.827 45 H 0.241 0.759 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.123 0.877 49 H 0.370 0.630 50 H 0.248 0.752 51 H 0.078 0.922 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -4.625 -12.924 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.122 4.122 4 C -0.123 4.123 5 H 0.118 0.882 6 C -0.182 4.182 7 C -0.209 4.209 8 H 0.155 0.845 9 C 0.351 3.649 10 O -0.472 6.472 11 N -0.342 5.342 12 C 0.002 3.998 13 C -0.042 4.042 14 H 0.090 0.910 15 C -0.128 4.128 16 C -0.183 4.183 17 N -0.248 5.248 18 C -0.100 4.100 19 N -0.142 5.142 20 C -0.076 4.076 21 C 0.065 3.935 22 H 0.097 0.903 23 N -0.361 5.361 24 C -0.364 4.364 25 H 0.100 0.900 26 C -0.259 4.259 27 N -0.618 5.618 28 Si 0.793 3.207 29 H -0.187 1.187 30 H -0.223 1.223 31 H -0.229 1.229 32 C -0.043 4.043 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.134 0.866 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.190 0.810 45 H 0.257 0.743 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.141 0.859 49 H 0.202 0.798 50 H 0.057 0.943 51 H 0.097 0.903 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.665 -4.447 -13.503 14.681 hybrid contribution 0.484 -0.432 1.743 1.860 sum -3.180 -4.878 -11.760 13.123 Atomic orbital electron populations 1.21760 0.94777 1.02104 1.02130 1.21494 0.96541 0.95833 1.02060 1.21248 0.89876 0.98117 1.02914 1.22460 0.95978 0.93874 0.99961 0.88200 1.23032 1.02561 1.01862 0.90753 1.22243 0.96607 0.99891 1.02201 0.84513 1.19718 0.85137 0.81003 0.79057 1.90616 1.70359 1.34435 1.51747 1.48877 1.23726 1.08519 1.53031 1.22302 0.84292 0.98082 0.95131 1.20555 0.95805 0.93450 0.94400 0.90955 1.20832 0.85222 1.01017 1.05748 1.22170 0.99839 0.94394 1.01864 1.70239 0.99979 1.30608 1.24009 1.25620 1.00835 0.85402 0.98122 1.45474 1.08611 1.21285 1.38828 1.22294 0.92584 0.89449 1.03311 1.21347 0.90921 0.97880 0.83335 0.90314 1.42577 1.67323 1.26094 1.00107 1.19634 1.27789 1.01754 0.87258 0.89996 1.25403 1.02215 0.99419 0.98878 1.69816 1.48555 1.29020 1.14361 0.85231 0.77077 0.78913 0.79512 1.18748 1.22329 1.22866 1.23456 0.99640 0.82228 0.98972 0.92159 0.92459 0.92371 0.92164 0.92076 0.90782 0.90739 0.90527 0.86607 0.89484 0.91064 0.81016 0.74267 0.90406 0.89993 0.85898 0.79796 0.94288 0.90301 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -2.10 5.89 30.60 0.18 -1.92 16 3 C -0.08 -1.62 5.50 30.59 0.17 -1.46 16 4 C -0.10 -2.66 5.25 -10.80 -0.06 -2.72 16 5 H 0.10 2.87 7.60 -2.39 -0.02 2.85 16 6 C -0.14 -4.20 9.88 30.59 0.30 -3.90 16 7 C -0.19 -5.49 5.02 -11.54 -0.06 -5.55 16 8 H 0.14 3.48 7.65 -2.39 -0.02 3.46 16 9 C 0.56 19.52 7.70 87.66 0.67 20.19 16 10 O -0.59 -23.91 16.53 -3.02 -0.05 -23.96 16 11 N -0.61 -19.57 3.32 -807.47 -2.68 -22.25 16 12 C 0.13 3.67 6.59 86.50 0.57 4.24 16 13 C -0.02 -0.63 2.95 -10.63 -0.03 -0.66 16 14 H 0.07 2.49 7.21 -2.39 -0.02 2.47 16 15 C -0.01 -0.36 5.78 40.95 0.24 -0.12 16 16 C -0.04 -1.05 10.67 83.52 0.89 -0.16 16 17 N -0.53 -15.83 11.25 -200.32 -2.25 -18.08 16 18 C 0.18 4.22 12.56 180.26 2.26 6.49 16 19 N -0.46 -10.99 3.15 -537.88 -1.70 -12.68 16 20 C 0.07 1.08 10.84 127.77 1.38 2.46 16 21 C 0.18 6.16 3.20 45.91 0.15 6.31 16 22 H 0.08 2.77 6.38 -2.39 -0.02 2.76 16 23 N -0.72 -33.15 5.11 -318.61 -1.63 -34.77 16 24 C -0.23 -11.84 9.96 84.03 0.84 -11.01 16 25 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 26 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 27 N -0.97 -56.65 13.06 21.65 0.28 -56.37 16 28 Si 0.96 44.16 29.55 68.60 2.03 46.18 16 29 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 30 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 31 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 32 C 0.08 2.52 6.54 86.54 0.57 3.09 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.34 7.88 -2.39 -0.02 1.32 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.12 3.06 8.03 -2.38 -0.02 3.04 16 42 H 0.09 2.31 7.85 -2.39 -0.02 2.29 16 43 H 0.07 2.18 7.89 -2.39 -0.02 2.16 16 44 H 0.17 4.70 7.50 -2.91 -0.02 4.68 16 45 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.08 1.43 7.70 -2.39 -0.02 1.41 16 48 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.37 18.99 7.56 -92.71 -0.70 18.29 16 50 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 51 H 0.08 2.67 7.13 -2.39 -0.02 2.65 16 52 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -70.59 423.03 3.47 -67.13 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: 0.21 Total: 44.07 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 9.26 Total: 10.73 kcal Atomic # 7 Polarization: -136.19 SS G_CDS: -7.98 Total: -144.16 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.59 3.47 -67.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070686906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.618 kcal (2) G-P(sol) polarization free energy of solvation -70.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds