Wall clock time and date at job start Wed Apr 1 2020 04:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46935 * 2 1 4 4 C 1.53004 * 109.46935 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47030 * 179.97438 * 4 3 2 6 6 C 1.34263 * 125.75019 * 124.71576 * 5 4 3 7 7 C 1.38045 * 107.41608 * 179.84882 * 6 5 4 8 8 C 1.47426 * 126.41621 * 180.16595 * 7 6 5 9 9 O 1.21602 * 119.99972 * 180.30219 * 8 7 6 10 10 N 1.34781 * 119.99863 * 0.29078 * 8 7 6 11 11 C 1.47389 * 135.85364 * 359.64598 * 10 8 7 12 12 C 1.52074 * 87.41231 * 154.38034 * 11 10 8 13 13 C 1.47394 * 135.85184 * 180.02562 * 10 8 7 14 14 C 1.53517 * 117.21094 * 267.28267 * 12 11 10 15 15 C 1.54636 * 102.69820 * 262.92805 * 14 12 11 16 16 N 1.47152 * 107.37626 * 339.38354 * 15 14 12 17 17 C 1.36936 * 125.57879 * 179.04705 * 16 15 14 18 18 H 1.08001 * 120.00019 * 174.83299 * 17 16 15 19 19 C 1.38810 * 120.00010 * 354.82413 * 17 16 15 20 20 N 1.31625 * 120.00043 * 7.06691 * 19 17 16 21 21 Si 1.86805 * 120.00215 * 187.06812 * 19 17 16 22 22 H 1.48495 * 109.47113 * 94.98402 * 21 19 17 23 23 H 1.48500 * 109.47120 * 214.98685 * 21 19 17 24 24 H 1.48503 * 109.46876 * 334.98746 * 21 19 17 25 25 C 1.47756 * 108.84064 * 359.08841 * 16 15 14 26 26 C 1.41290 * 107.16864 * 0.41161 * 7 6 5 27 27 C 1.50707 * 125.98768 * 179.78173 * 26 7 6 28 28 N 1.30451 * 108.02445 * 359.74566 * 26 7 6 29 29 H 1.09000 * 109.47130 * 300.00253 * 1 2 3 30 30 H 1.08999 * 109.46940 * 60.00547 * 1 2 3 31 31 H 1.09003 * 109.46908 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47269 * 239.99456 * 2 1 3 33 33 H 1.08999 * 109.46940 * 119.99453 * 2 1 3 34 34 H 1.08999 * 109.46860 * 299.99503 * 3 2 1 35 35 H 1.08992 * 109.47586 * 59.99650 * 3 2 1 36 36 H 1.08999 * 109.46940 * 299.99453 * 4 3 2 37 37 H 1.09000 * 109.47130 * 59.99747 * 4 3 2 38 38 H 1.08005 * 126.29244 * 0.02562 * 6 5 4 39 39 H 1.09001 * 113.53795 * 268.99274 * 11 10 8 40 40 H 1.08992 * 113.54467 * 39.66932 * 11 10 8 41 41 H 1.09002 * 113.54353 * 320.33333 * 13 10 8 42 42 H 1.09001 * 113.54125 * 90.93959 * 13 10 8 43 43 H 1.08995 * 110.76577 * 21.22386 * 14 12 11 44 44 H 1.08990 * 110.76478 * 144.62638 * 14 12 11 45 45 H 1.08999 * 109.86859 * 98.83516 * 15 14 12 46 46 H 1.09001 * 109.86235 * 219.93827 * 15 14 12 47 47 H 0.97001 * 120.00042 * 180.02562 * 20 19 17 48 48 H 1.09000 * 110.40762 * 263.50219 * 25 16 15 49 49 H 1.09000 * 110.39973 * 141.07719 * 25 16 15 50 50 H 1.09001 * 109.46595 * 269.98417 * 27 26 7 51 51 H 1.08997 * 109.47058 * 29.98397 * 27 26 7 52 52 H 1.09003 * 109.47134 * 149.98684 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.9045 3.3570 0.8957 7 6 5.1110 4.6737 0.5361 8 6 5.9725 5.6464 1.2326 9 8 6.0652 6.7847 0.8151 10 7 6.6571 5.2740 2.3323 11 6 6.7977 4.0377 3.1223 12 6 8.1612 4.5523 3.5567 13 6 7.5856 5.9278 3.2719 14 6 9.3741 4.1176 2.7220 15 6 9.9281 2.9186 3.5262 16 7 9.4154 3.0366 4.9004 17 6 9.6623 2.1578 5.9212 18 1 9.3087 2.3752 6.9183 19 6 10.3668 0.9876 5.6743 20 7 10.9171 0.7869 4.4956 21 14 10.5341 -0.3025 7.0150 22 1 9.4712 -1.3265 6.8518 23 1 11.8661 -0.9512 6.9143 24 1 10.3979 0.3448 8.3445 25 6 8.5897 4.2581 4.9984 26 6 4.3375 4.9161 -0.6211 27 6 4.2463 6.2221 -1.3677 28 7 3.7168 3.8113 -0.9306 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.9329 0.9289 0.8909 37 1 3.9337 0.9285 -0.8891 38 1 5.3451 2.8484 1.7406 39 1 6.0811 3.9596 3.9399 40 1 6.8451 3.1349 2.5135 41 1 8.2908 6.6034 2.7879 42 1 7.0893 6.3797 4.1308 43 1 9.0648 3.8043 1.7250 44 1 10.1112 4.9185 2.6654 45 1 9.5849 1.9843 3.0818 46 1 11.0176 2.9491 3.5335 47 1 11.4091 -0.0311 4.3230 48 1 9.1791 5.0844 5.3959 49 1 7.7164 4.0771 5.6250 50 1 3.4306 6.8182 -0.9586 51 1 5.1839 6.7676 -1.2614 52 1 4.0583 6.0249 -2.4232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073113497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:12 Heat of formation + Delta-G solvation = 96.496876 kcal Electronic energy + Delta-G solvation = -30757.914633 eV Core-core repulsion = 26760.970933 eV Total energy + Delta-G solvation = -3996.943699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.57084 -40.41919 -37.98433 -36.35459 -35.65542 -33.51157 -32.30614 -31.11498 -30.02818 -29.30454 -28.59121 -27.48172 -26.07250 -25.74239 -24.21171 -23.55289 -21.97811 -21.62003 -20.36350 -20.12745 -19.10850 -18.42389 -17.08619 -16.81498 -16.32362 -16.12627 -15.64417 -15.51748 -15.09088 -14.76710 -14.56031 -14.26464 -14.11945 -13.84698 -13.71899 -13.34349 -13.16153 -12.95392 -12.87206 -12.66707 -12.39036 -12.27472 -12.08643 -11.91316 -11.85076 -11.83806 -11.68402 -11.49616 -11.10250 -11.05338 -10.93810 -10.82861 -10.67647 -10.42477 -10.18567 -10.12759 -9.88759 -9.69438 -9.51874 -9.43150 -8.79164 -8.62476 -8.40571 -6.88368 -5.77467 -3.10005 1.45292 2.13690 2.17159 3.01989 3.35587 3.41563 3.43567 3.56062 4.04985 4.38233 4.42255 4.49088 4.53073 4.59030 4.64932 4.77502 4.84280 4.94333 4.99052 5.05968 5.15927 5.27391 5.33592 5.35283 5.43481 5.44463 5.49226 5.55468 5.61909 5.64371 5.66187 5.70029 5.74684 5.79332 5.82643 5.84659 5.90151 5.96870 6.03340 6.17555 6.22017 6.43776 6.49176 6.51605 6.64105 6.67972 6.70627 7.51101 7.51489 7.57563 7.77619 7.93505 8.19675 8.41187 9.16265 9.76613 10.42745 11.34341 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008690 B = 0.002988 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.323997 B = 9369.688427 C =11942.236881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.128 3.872 5 N -0.358 5.358 6 C 0.100 3.900 7 C -0.283 4.283 8 C 0.622 3.378 9 O -0.550 6.550 10 N -0.642 5.642 11 C 0.115 3.885 12 C -0.103 4.103 13 C 0.122 3.878 14 C -0.117 4.117 15 C 0.179 3.821 16 N -0.605 5.605 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.153 3.847 26 C 0.129 3.871 27 C -0.075 4.075 28 N -0.302 5.302 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.186 0.814 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.042 0.958 47 H 0.252 0.748 48 H 0.027 0.973 49 H 0.043 0.957 50 H 0.077 0.923 51 H 0.095 0.905 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.865 2.552 -9.041 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.169 4.169 4 C 0.007 3.993 5 N -0.136 5.136 6 C -0.051 4.051 7 C -0.297 4.297 8 C 0.413 3.587 9 O -0.430 6.430 10 N -0.376 5.376 11 C -0.008 4.008 12 C -0.105 4.105 13 C 0.000 4.000 14 C -0.155 4.155 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.026 3.974 26 C -0.038 4.038 27 C -0.134 4.134 28 N -0.124 5.124 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.203 0.797 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.061 0.939 50 H 0.096 0.904 51 H 0.114 0.886 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.673 2.284 -10.258 20.562 hybrid contribution 0.702 -0.653 1.406 1.702 sum -16.971 1.631 -8.852 19.210 Atomic orbital electron populations 1.21746 0.95301 1.01842 1.02036 1.21469 0.96507 0.95567 1.02554 1.21898 0.93084 0.98013 1.03922 1.21941 0.95946 0.76878 1.04498 1.48470 1.34442 1.10358 1.20309 1.23558 0.92512 0.93973 0.95050 1.20157 1.11470 0.94557 1.03551 1.16703 0.77409 0.86081 0.78490 1.90713 1.65604 1.20231 1.66427 1.49606 1.46641 1.15894 1.25481 1.22976 0.96140 0.88332 0.93332 1.22172 0.94410 0.94570 0.99363 1.22736 0.90051 0.96391 0.90868 1.22460 0.94879 1.00209 0.97959 1.21231 0.97218 0.92877 0.83258 1.44554 1.56567 1.23924 1.08102 1.19046 1.30445 0.97508 0.88671 0.90387 1.24809 1.00238 0.98209 0.97035 1.69980 1.38910 1.26459 1.21322 0.86144 0.77090 0.81928 0.80891 1.21686 1.21809 1.20624 1.21152 0.94275 0.90557 0.91396 1.22442 0.92800 0.95075 0.93510 1.20316 1.04666 0.90109 0.98265 1.77103 1.24670 0.96739 1.13879 0.92640 0.92607 0.92464 0.91523 0.91499 0.90271 0.91298 0.88102 0.89242 0.79741 0.89493 0.90472 0.90387 0.89856 0.92101 0.91727 0.93456 0.94003 0.93761 0.95543 0.93895 0.90429 0.88648 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.13 -0.98 5.39 -26.73 -0.14 -1.12 16 4 C 0.13 1.03 6.49 -4.04 -0.03 1.01 16 5 N -0.36 -4.20 3.65 -60.80 -0.22 -4.42 16 6 C 0.10 1.23 10.60 -16.56 -0.18 1.06 16 7 C -0.28 -4.12 6.13 -105.07 -0.64 -4.77 16 8 C 0.62 10.09 8.06 -12.52 -0.10 9.99 16 9 O -0.55 -10.24 15.69 5.28 0.08 -10.15 16 10 N -0.64 -9.47 3.70 -186.97 -0.69 -10.17 16 11 C 0.11 1.58 6.40 -7.33 -0.05 1.53 16 12 C -0.10 -1.62 1.06 -155.21 -0.16 -1.78 16 13 C 0.12 1.72 8.03 -7.46 -0.06 1.66 16 14 C -0.12 -2.06 6.41 -25.60 -0.16 -2.22 16 15 C 0.18 4.06 5.40 -2.83 -0.02 4.05 16 16 N -0.60 -14.28 3.41 -170.53 -0.58 -14.86 16 17 C -0.23 -6.00 10.26 -15.06 -0.15 -6.15 16 18 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 20 N -0.92 -25.89 10.35 55.49 0.57 -25.32 16 21 Si 0.91 21.18 29.56 -169.99 -5.02 16.15 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.15 2.81 6.70 -3.22 -0.02 2.79 16 26 C 0.13 1.83 7.26 -82.02 -0.60 1.23 16 27 C -0.07 -0.90 9.92 36.01 0.36 -0.54 16 28 N -0.30 -4.13 12.33 33.90 0.42 -3.71 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.19 1.92 5.19 -52.48 -0.27 1.65 16 39 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 40 H 0.08 1.04 6.25 -51.93 -0.32 0.72 16 41 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.03 8.07 -51.93 -0.42 0.62 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.05 1.19 7.30 -51.93 -0.38 0.81 16 46 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 47 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 50 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.09 1.26 6.55 -51.93 -0.34 0.92 16 52 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 414.66 15.07 6.25 6.25 Total: -1.00 -32.40 414.66 -9.88 -42.29 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.85 Total: -1.12 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.84 Total: 5.06 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.50 Total: -58.47 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.40 -9.88 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073113497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.782 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds