Wall clock time and date at job start Wed Apr 1 2020 04:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.46869 * 2 1 4 4 C 1.53007 * 109.47003 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46908 * 179.97438 * 4 3 2 6 6 N 1.39935 * 125.75524 * 270.15386 * 5 4 3 7 7 C 1.30444 * 108.89861 * 180.24008 * 6 5 4 8 8 C 1.41296 * 108.02024 * 359.78067 * 7 6 5 9 9 C 1.47427 * 126.41226 * 179.97438 * 8 7 6 10 10 O 1.21603 * 120.00028 * 179.97438 * 9 8 7 11 11 N 1.34781 * 120.00268 * 0.02562 * 9 8 7 12 12 C 1.47382 * 135.85064 * 359.63445 * 11 9 8 13 13 C 1.52070 * 87.41373 * 154.38301 * 12 11 9 14 14 C 1.47389 * 135.85507 * 179.97438 * 11 9 8 15 15 C 1.53507 * 117.21366 * 267.28114 * 13 12 11 16 16 C 1.54635 * 102.69983 * 262.92532 * 15 13 12 17 17 N 1.47144 * 107.37785 * 339.38353 * 16 15 13 18 18 C 1.36935 * 125.58005 * 179.04041 * 17 16 15 19 19 H 1.08007 * 119.99768 * 174.82458 * 18 17 16 20 20 C 1.38814 * 119.99997 * 354.83521 * 18 17 16 21 21 N 1.31618 * 120.00232 * 7.05781 * 20 18 17 22 22 Si 1.86805 * 119.99934 * 187.06226 * 20 18 17 23 23 H 1.48503 * 109.46874 * 94.98191 * 22 20 18 24 24 H 1.48493 * 109.47080 * 214.98266 * 22 20 18 25 25 H 1.48499 * 109.47158 * 334.98292 * 22 20 18 26 26 C 1.47758 * 108.83843 * 359.08799 * 17 16 15 27 27 C 1.34261 * 125.75459 * 90.00419 * 5 4 3 28 28 C 1.50703 * 126.28754 * 0.02805 * 27 5 4 29 29 H 1.09004 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47653 * 299.99630 * 1 2 3 31 31 H 1.09002 * 109.47642 * 59.99953 * 1 2 3 32 32 H 1.08997 * 109.47305 * 239.99854 * 2 1 3 33 33 H 1.09000 * 109.47161 * 119.99843 * 2 1 3 34 34 H 1.08997 * 109.47276 * 59.99836 * 3 2 1 35 35 H 1.09000 * 109.47100 * 299.99880 * 3 2 1 36 36 H 1.09006 * 109.46720 * 60.00341 * 4 3 2 37 37 H 1.09000 * 109.47220 * 299.99960 * 4 3 2 38 38 H 1.07997 * 125.98873 * 179.77504 * 7 6 5 39 39 H 1.09006 * 113.54427 * 268.99072 * 12 11 9 40 40 H 1.08999 * 113.54619 * 39.67034 * 12 11 9 41 41 H 1.09002 * 113.54140 * 320.32555 * 14 11 9 42 42 H 1.09000 * 113.54355 * 90.93075 * 14 11 9 43 43 H 1.09004 * 110.76494 * 21.22417 * 15 13 12 44 44 H 1.09003 * 110.76914 * 144.62393 * 15 13 12 45 45 H 1.09005 * 109.86768 * 98.83752 * 16 15 13 46 46 H 1.09001 * 109.86170 * 219.93150 * 16 15 13 47 47 H 0.96998 * 119.99809 * 180.02562 * 21 20 18 48 48 H 1.08997 * 110.40662 * 263.49946 * 26 17 16 49 49 H 1.08999 * 110.40104 * 141.07843 * 26 17 16 50 50 H 1.08998 * 109.47577 * 269.71584 * 28 27 5 51 51 H 1.09002 * 109.46816 * 149.71104 * 28 27 5 52 52 H 1.09005 * 109.47293 * 29.71648 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0582 2.8238 0.0000 6 7 4.3283 3.5951 -1.1359 7 6 4.7500 4.7703 -0.7582 8 6 4.7611 4.7974 0.6545 9 6 5.1688 5.9307 1.5048 10 8 5.1319 5.8263 2.7158 11 7 5.5814 7.0828 0.9400 12 6 5.7650 7.5800 -0.4352 13 6 5.5639 8.9820 0.1184 14 6 6.0511 8.3915 1.4289 15 6 4.1369 9.5473 0.0970 16 6 4.1295 10.4028 -1.1912 17 7 5.5300 10.7061 -1.5254 18 6 5.9519 11.4285 -2.6095 19 1 6.9986 11.6688 -2.7241 20 6 5.0343 11.8520 -3.5611 21 7 3.7456 11.6819 -3.3543 22 14 5.6284 12.6635 -5.1353 23 1 5.7361 11.6424 -6.2083 24 1 4.6620 13.7133 -5.5462 25 1 6.9594 13.2795 -4.9028 26 6 6.4065 10.1026 -0.5004 27 6 4.3193 3.5641 1.0893 28 6 4.1645 3.1266 2.5231 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9563 0.8899 35 1 1.6765 1.9563 -0.8900 36 1 3.9336 0.9286 -0.8892 37 1 3.9329 0.9289 0.8909 38 1 5.0400 5.5804 -1.4108 39 1 6.7660 7.4075 -0.8306 40 1 4.9789 7.2641 -1.1210 41 1 5.5038 8.7531 2.2994 42 1 7.1322 8.4459 1.5571 43 1 3.4037 8.7434 0.0312 44 1 3.9538 10.1680 0.9741 45 1 3.6672 9.8434 -2.0047 46 1 3.5811 11.3287 -1.0177 47 1 3.1045 11.9775 -4.0194 48 1 6.6710 10.8413 0.2562 49 1 7.3045 9.6922 -0.9622 50 1 3.1598 3.3678 2.8701 51 1 4.8969 3.6448 3.1421 52 1 4.3249 2.0508 2.5941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073115233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:23 Heat of formation + Delta-G solvation = 96.691038 kcal Electronic energy + Delta-G solvation = -30646.319711 eV Core-core repulsion = 26649.384431 eV Total energy + Delta-G solvation = -3996.935280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.62204 -40.39292 -37.95364 -36.40212 -35.61110 -33.34286 -32.17604 -32.02303 -29.88377 -29.01280 -28.46642 -27.32645 -26.04255 -25.63381 -24.41822 -23.65436 -22.04468 -21.73096 -20.31424 -20.13725 -19.05356 -18.30062 -17.18980 -16.72414 -16.26261 -15.87688 -15.76403 -15.46734 -15.28766 -14.73594 -14.55755 -14.24197 -14.13836 -13.79823 -13.59887 -13.40904 -13.19632 -13.12704 -12.91086 -12.80400 -12.41027 -12.31394 -12.17996 -11.88484 -11.85651 -11.84775 -11.78942 -11.57942 -11.13197 -10.99276 -10.92668 -10.85252 -10.61422 -10.35766 -10.13193 -10.07512 -9.83359 -9.63227 -9.54291 -9.46680 -8.77170 -8.56486 -8.34980 -6.82243 -5.71621 -3.03909 1.43065 2.13662 2.16994 3.07208 3.41041 3.46469 3.48424 3.57053 4.12738 4.24845 4.39962 4.47396 4.50606 4.55767 4.65599 4.74721 4.80641 4.88658 4.97860 5.03165 5.07893 5.22928 5.28806 5.31228 5.34583 5.37625 5.41672 5.50474 5.57935 5.63251 5.67206 5.70014 5.72107 5.73325 5.81996 5.85857 5.86678 5.89891 6.09574 6.22011 6.26423 6.40931 6.50463 6.57187 6.70314 6.71690 6.73837 7.47919 7.56816 7.64301 7.83743 7.97246 8.25799 8.42385 9.22207 9.82630 10.48814 11.40300 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.002380 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.446759 B =11759.504594 C =13069.973970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.138 4.138 4 C 0.129 3.871 5 N -0.362 5.362 6 N -0.298 5.298 7 C 0.083 3.917 8 C -0.289 4.289 9 C 0.623 3.377 10 O -0.559 6.559 11 N -0.638 5.638 12 C 0.116 3.884 13 C -0.104 4.104 14 C 0.123 3.877 15 C -0.117 4.117 16 C 0.179 3.821 17 N -0.604 5.604 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.153 3.847 27 C 0.153 3.847 28 C -0.097 4.097 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.193 0.807 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.041 0.959 47 H 0.252 0.748 48 H 0.026 0.974 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.106 0.894 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 -22.513 9.917 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.177 4.177 4 C 0.008 3.992 5 N -0.141 5.141 6 N -0.117 5.117 7 C -0.104 4.104 8 C -0.303 4.303 9 C 0.415 3.585 10 O -0.439 6.439 11 N -0.372 5.372 12 C -0.007 4.007 13 C -0.106 4.106 14 C 0.000 4.000 15 C -0.155 4.155 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.207 1.207 26 C 0.026 3.974 27 C 0.021 3.979 28 C -0.155 4.155 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.210 0.790 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.044 0.956 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.124 0.876 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.032 -23.562 9.436 25.463 hybrid contribution 0.417 0.988 -0.436 1.158 sum -1.615 -22.574 9.000 24.356 Atomic orbital electron populations 1.21757 0.95212 1.01871 1.02213 1.21441 0.96569 0.95415 1.02403 1.22050 0.93560 0.98226 1.03839 1.21839 0.95110 0.77620 1.04665 1.48530 1.50012 1.12148 1.03446 1.77221 1.22586 1.04599 1.07246 1.24426 0.96340 0.95473 0.94190 1.19909 1.20724 0.96140 0.93546 1.16637 0.76210 0.79514 0.86176 1.90697 1.57366 1.81764 1.14097 1.49500 1.64768 1.12500 1.10444 1.22996 1.01741 0.91282 0.84655 1.22170 0.99218 0.94378 0.94829 1.22736 0.99545 0.79649 0.98072 1.22457 0.92969 0.99214 1.00848 1.21233 0.86196 0.96253 0.90929 1.44543 1.01039 1.61696 1.25833 1.19044 0.93224 1.26430 0.96923 0.90387 1.24812 0.95399 1.01381 0.98742 1.69976 0.99718 1.52221 1.34749 0.86143 0.77557 0.78553 0.83789 1.21647 1.21857 1.20654 1.21146 0.93025 0.91613 0.91566 1.21456 0.94670 0.90713 0.91057 1.20665 1.05017 1.01257 0.88570 0.92453 0.92571 0.92493 0.91513 0.91634 0.91149 0.90612 0.88356 0.88754 0.79003 0.89421 0.90078 0.90474 0.89865 0.92070 0.91828 0.93377 0.94045 0.93773 0.95620 0.93872 0.89642 0.87584 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.15 0.37 -0.44 16 2 C -0.12 -0.59 5.93 -26.74 -0.16 -0.75 16 3 C -0.14 -0.94 5.54 -26.73 -0.15 -1.09 16 4 C 0.13 0.95 6.21 -4.04 -0.03 0.92 16 5 N -0.36 -4.17 3.58 -56.60 -0.20 -4.38 16 6 N -0.30 -4.18 12.50 30.86 0.39 -3.79 16 7 C 0.08 1.17 11.14 -16.98 -0.19 0.98 16 8 C -0.29 -4.21 6.13 -105.07 -0.64 -4.85 16 9 C 0.62 10.10 8.06 -12.52 -0.10 10.00 16 10 O -0.56 -10.14 15.61 5.27 0.08 -10.06 16 11 N -0.64 -9.70 3.70 -187.05 -0.69 -10.39 16 12 C 0.12 1.70 6.42 -7.35 -0.05 1.65 16 13 C -0.10 -1.69 1.06 -155.23 -0.16 -1.86 16 14 C 0.12 1.76 8.02 -7.49 -0.06 1.70 16 15 C -0.12 -2.12 6.40 -25.61 -0.16 -2.29 16 16 C 0.18 4.17 5.40 -2.83 -0.02 4.16 16 17 N -0.60 -14.67 3.41 -170.53 -0.58 -15.25 16 18 C -0.23 -6.13 10.26 -15.06 -0.15 -6.29 16 19 H 0.08 2.03 7.84 -52.48 -0.41 1.61 16 20 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 21 N -0.92 -26.54 10.35 55.49 0.57 -25.96 16 22 Si 0.91 21.73 29.56 -169.99 -5.02 16.71 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.15 2.91 6.70 -3.22 -0.02 2.88 16 27 C 0.15 1.90 7.01 -81.60 -0.57 1.33 16 28 C -0.10 -0.92 9.57 36.01 0.34 -0.58 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.47 7.01 -51.93 -0.36 0.11 16 38 H 0.19 2.48 5.21 -52.49 -0.27 2.21 16 39 H 0.09 1.16 8.06 -51.93 -0.42 0.75 16 40 H 0.08 1.20 6.21 -51.93 -0.32 0.88 16 41 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 46 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16 50 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.11 1.20 6.50 -51.93 -0.34 0.86 16 52 H 0.07 0.44 7.04 -51.93 -0.37 0.08 16 LS Contribution 412.29 15.07 6.21 6.21 Total: -1.00 -33.09 412.29 -9.82 -42.91 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.73 Total: -1.21 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.85 Total: 5.20 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.52 Total: -59.77 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.09 -9.82 -42.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073115233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.603 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds