Wall clock time and date at job start Wed Apr 1 2020 03:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 C 1.52995 * 109.47146 * 184.89395 * 3 2 1 5 5 C 1.53000 * 109.47459 * 65.47567 * 4 3 2 6 6 N 1.46497 * 109.47282 * 64.89000 * 3 2 1 7 7 N 1.28447 * 125.18865 * 64.62110 * 6 3 2 8 8 C 1.30870 * 110.92823 * 179.81999 * 7 6 3 9 9 C 1.39667 * 107.85719 * 0.43406 * 8 7 6 10 10 C 1.36597 * 125.19509 * 244.91996 * 6 3 2 11 11 C 1.47167 * 126.88005 * 359.97438 * 10 6 3 12 12 O 1.21625 * 120.00038 * 351.66286 * 11 10 6 13 13 N 1.34780 * 119.99780 * 171.66049 * 11 10 6 14 14 C 1.47398 * 125.58961 * 359.53829 * 13 11 10 15 15 C 1.54854 * 104.80724 * 204.60637 * 14 13 11 16 16 C 1.55116 * 101.77900 * 322.81229 * 15 14 13 17 17 H 1.09002 * 113.46584 * 159.24613 * 16 15 14 18 18 C 1.54042 * 108.25992 * 286.09283 * 16 15 14 19 19 N 1.46707 * 106.83106 * 135.80665 * 18 16 15 20 20 C 1.36939 * 125.32430 * 161.80197 * 19 18 16 21 21 H 1.07998 * 120.00309 * 5.15265 * 20 19 18 22 22 C 1.38819 * 119.99648 * 185.15367 * 20 19 18 23 23 N 1.31613 * 120.00257 * 5.61045 * 22 20 19 24 24 Si 1.86799 * 119.99557 * 185.61386 * 22 20 19 25 25 H 1.48491 * 109.47510 * 94.99399 * 24 22 20 26 26 H 1.48503 * 109.46803 * 214.99666 * 24 22 20 27 27 H 1.48507 * 109.47104 * 334.99050 * 24 22 20 28 28 C 1.46637 * 109.35151 * 341.82081 * 19 18 16 29 29 C 1.46730 * 125.58661 * 179.22592 * 13 11 10 30 30 H 1.08999 * 111.32714 * 56.12577 * 29 13 11 31 31 H 1.09002 * 109.46883 * 294.94299 * 1 2 3 32 32 H 1.09005 * 109.46863 * 54.94252 * 1 2 3 33 33 H 1.08994 * 109.47077 * 174.93802 * 1 2 3 34 34 H 1.09001 * 109.47422 * 240.00096 * 2 1 3 35 35 H 1.09004 * 109.47233 * 119.99578 * 2 1 3 36 36 H 1.09003 * 109.46956 * 304.89271 * 3 2 1 37 37 H 1.09001 * 109.47288 * 185.47883 * 4 3 2 38 38 H 1.09004 * 109.47300 * 305.47602 * 4 3 2 39 39 H 1.08995 * 109.46841 * 64.38890 * 5 4 3 40 40 H 1.09001 * 109.47292 * 184.39085 * 5 4 3 41 41 H 1.08998 * 109.46749 * 304.39036 * 5 4 3 42 42 H 1.07996 * 126.06924 * 180.18055 * 8 7 6 43 43 H 1.08003 * 127.32016 * 179.72537 * 9 8 7 44 44 H 1.09004 * 110.37287 * 323.43486 * 14 13 11 45 45 H 1.08997 * 110.37324 * 85.66093 * 14 13 11 46 46 H 1.08998 * 110.97033 * 80.93445 * 15 14 13 47 47 H 1.09001 * 110.96723 * 204.69240 * 15 14 13 48 48 H 1.09002 * 109.99355 * 255.14723 * 18 16 15 49 49 H 1.08998 * 109.98904 * 16.46489 * 18 16 15 50 50 H 0.96998 * 119.99907 * 180.02562 * 23 22 20 51 51 H 1.08995 * 109.75566 * 120.93256 * 28 19 18 52 52 H 1.09009 * 109.75545 * 241.62700 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 -0.1231 5 6 3.9672 0.8837 -1.4887 6 7 1.6502 2.0983 1.2506 7 7 2.0615 1.7647 2.4208 8 6 1.5402 2.5391 3.3380 9 6 0.7035 3.4567 2.6987 10 6 0.7894 3.1542 1.3509 11 6 0.0933 3.8341 0.2468 12 8 0.3741 3.5662 -0.9058 13 7 -0.8553 4.7538 0.5131 14 6 -1.2983 5.1648 1.8575 15 6 -2.7374 5.6990 1.6539 16 6 -2.6194 6.4118 0.2813 17 1 -3.5775 6.5499 -0.2199 18 6 -1.8398 7.7247 0.4847 19 7 -0.8723 7.8189 -0.6141 20 6 -0.2365 8.9641 -1.0133 21 1 -0.3695 9.8786 -0.4543 22 6 0.5791 8.9496 -2.1365 23 7 0.6549 7.8669 -2.8809 24 14 1.5692 10.4670 -2.5914 25 1 2.9394 10.3503 -2.0312 26 1 1.6469 10.5824 -4.0698 27 1 0.9080 11.6746 -2.0348 28 6 -0.6930 6.4949 -1.2184 29 6 -1.6119 5.5145 -0.4878 30 1 -2.1240 4.8519 -1.1855 31 1 -0.3633 0.4334 0.9318 32 1 -0.3633 0.5903 -0.8413 33 1 -0.3633 -1.0236 -0.0907 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6068 1.9810 -0.8429 37 1 3.9362 2.4645 -0.0254 38 1 3.9938 0.8247 0.6646 39 1 3.6044 1.5462 -2.2745 40 1 5.0533 0.8121 -1.5465 41 1 3.5304 -0.1065 -1.6178 42 1 1.7213 2.4768 4.4008 43 1 0.1144 4.2365 3.1585 44 1 -1.3031 4.3097 2.5334 45 1 -0.6513 5.9512 2.2462 46 1 -3.4547 4.8796 1.6075 47 1 -3.0057 6.4062 2.4388 48 1 -2.5236 8.5730 0.4527 49 1 -1.3168 7.7032 1.4408 50 1 1.2251 7.8567 -3.6655 51 1 -0.9574 6.5333 -2.2751 52 1 0.3442 6.1776 -1.1095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075880285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:28 Heat of formation + Delta-G solvation = 81.221374 kcal Electronic energy + Delta-G solvation = -32687.172737 eV Core-core repulsion = 28689.566642 eV Total energy + Delta-G solvation = -3997.606095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.53196 -40.11667 -37.77525 -36.93090 -34.88774 -32.44581 -31.96770 -31.25028 -30.94310 -30.76289 -28.60397 -26.67542 -26.26572 -24.76059 -23.73220 -23.00171 -22.31631 -21.66956 -21.02004 -20.13936 -19.23139 -18.80875 -17.17747 -16.73850 -16.49939 -15.96496 -15.68995 -15.06758 -14.82514 -14.63707 -14.49084 -14.23982 -14.05515 -13.78961 -13.58731 -13.40928 -13.24792 -12.75570 -12.67971 -12.47698 -12.26763 -12.12209 -12.03513 -11.89035 -11.62925 -11.60143 -11.19085 -11.11391 -11.06292 -10.98623 -10.78558 -10.72757 -10.49382 -10.43366 -10.21958 -10.15971 -9.89872 -9.72175 -9.52623 -9.07262 -8.89377 -8.59837 -8.25813 -6.80304 -5.66526 -3.04461 1.45936 2.42442 2.72039 3.29934 3.41342 3.46017 3.48309 3.48743 4.35696 4.46604 4.51391 4.67364 4.74298 4.83628 4.97166 4.98935 5.07725 5.09910 5.18647 5.24319 5.29400 5.45402 5.47361 5.51230 5.51731 5.56235 5.65462 5.71696 5.72974 5.74810 5.75397 5.81219 5.85216 5.89417 5.94987 6.00030 6.03998 6.14010 6.19131 6.20096 6.29405 6.42503 6.51053 6.60130 6.62500 6.84441 6.87848 7.57506 7.59675 7.80255 7.89909 8.16981 8.30008 8.42625 9.23580 9.85202 10.48305 11.41793 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010952 B = 0.003842 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.947332 B = 7286.066009 C = 8601.857419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C 0.132 3.868 4 C -0.127 4.127 5 C -0.151 4.151 6 N -0.246 5.246 7 N -0.279 5.279 8 C -0.011 4.011 9 C -0.207 4.207 10 C -0.022 4.022 11 C 0.601 3.399 12 O -0.533 6.533 13 N -0.585 5.585 14 C 0.087 3.913 15 C -0.125 4.125 16 C -0.110 4.110 17 H 0.100 0.900 18 C 0.141 3.859 19 N -0.601 5.601 20 C -0.233 4.233 21 H 0.078 0.922 22 C -0.005 4.005 23 N -0.915 5.915 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.172 3.828 29 C 0.119 3.881 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.182 0.818 43 H 0.168 0.832 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.036 0.964 49 H 0.019 0.981 50 H 0.253 0.747 51 H 0.069 0.931 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -14.706 10.815 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.032 3.968 4 C -0.165 4.165 5 C -0.209 4.209 6 N -0.033 5.033 7 N -0.112 5.112 8 C -0.187 4.187 9 C -0.235 4.235 10 C -0.151 4.151 11 C 0.388 3.612 12 O -0.411 6.411 13 N -0.317 5.317 14 C -0.035 4.035 15 C -0.163 4.163 16 C -0.130 4.130 17 H 0.118 0.882 18 C 0.015 3.985 19 N -0.328 5.328 20 C -0.362 4.362 21 H 0.096 0.904 22 C -0.202 4.202 23 N -0.562 5.562 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.046 3.954 29 C 0.016 3.984 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.199 0.801 43 H 0.186 0.814 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.054 0.946 49 H 0.036 0.964 50 H 0.063 0.937 51 H 0.087 0.913 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.628 -15.807 9.698 18.616 hybrid contribution 0.138 1.583 0.061 1.591 sum -1.490 -14.223 9.759 17.314 Atomic orbital electron populations 1.21769 0.95180 1.01789 1.02318 1.21939 0.96819 0.94602 1.03507 1.22283 0.96947 0.94736 0.82841 1.21778 0.93043 1.02703 0.99019 1.21803 1.01604 1.01248 0.96239 1.45867 1.29770 1.21666 1.06041 1.73074 1.22475 1.25113 0.90528 1.23512 0.99856 0.95977 0.99333 1.22744 1.05188 1.04110 0.91490 1.21425 1.01542 0.96450 0.95669 1.16422 0.79012 0.79048 0.86688 1.90746 1.64446 1.64758 1.21117 1.48009 1.37101 1.38234 1.08398 1.22820 0.95776 0.99804 0.85141 1.22788 0.95593 1.00077 0.97890 1.23169 0.98450 0.96285 0.95074 0.88188 1.21328 0.91173 0.93810 0.92220 1.44220 1.47813 1.05290 1.35456 1.19019 1.21768 0.87761 1.07623 0.90433 1.24829 1.00651 0.97518 0.97208 1.69957 1.41912 1.26909 1.17392 0.86131 0.80234 0.82058 0.77525 1.21711 1.21704 1.20577 1.21202 0.96097 0.81971 0.96109 1.22564 0.92904 0.92866 0.90032 0.90082 0.93166 0.91952 0.92368 0.89576 0.90802 0.84365 0.91241 0.90757 0.91827 0.92025 0.92145 0.80103 0.81445 0.89745 0.90603 0.90947 0.89741 0.94627 0.96357 0.93688 0.91333 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.74 37.16 0.36 -1.43 16 2 C -0.13 -1.47 5.41 -26.73 -0.14 -1.61 16 3 C 0.13 1.82 2.41 -67.93 -0.16 1.65 16 4 C -0.13 -1.58 5.50 -26.73 -0.15 -1.72 16 5 C -0.15 -1.55 9.78 37.16 0.36 -1.19 16 6 N -0.25 -3.72 2.63 -50.69 -0.13 -3.85 16 7 N -0.28 -4.02 11.57 30.59 0.35 -3.66 16 8 C -0.01 -0.14 12.03 -17.43 -0.21 -0.35 16 9 C -0.21 -2.77 9.26 -38.99 -0.36 -3.13 16 10 C -0.02 -0.36 6.89 -82.06 -0.57 -0.92 16 11 C 0.60 11.24 7.37 -12.63 -0.09 11.14 16 12 O -0.53 -11.45 14.32 5.26 0.08 -11.37 16 13 N -0.58 -10.16 2.99 -164.08 -0.49 -10.65 16 14 C 0.09 1.16 4.77 -2.57 -0.01 1.15 16 15 C -0.13 -1.48 6.35 -24.63 -0.16 -1.63 16 16 C -0.11 -1.75 4.35 -87.74 -0.38 -2.13 16 17 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 18 C 0.14 2.76 6.45 -3.39 -0.02 2.73 16 19 N -0.60 -15.27 3.38 -172.35 -0.58 -15.85 16 20 C -0.23 -6.54 10.24 -15.06 -0.15 -6.69 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 22 C -0.01 -0.15 5.46 -17.43 -0.10 -0.24 16 23 N -0.91 -27.63 10.34 55.49 0.57 -27.05 16 24 Si 0.91 22.46 29.56 -169.99 -5.02 17.43 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.17 4.28 4.97 -3.99 -0.02 4.26 16 29 C 0.12 2.28 3.55 -66.61 -0.24 2.04 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.05 0.65 7.89 -51.93 -0.41 0.24 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.81 6.28 -51.93 -0.33 0.48 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.14 2.24 5.34 -51.93 -0.28 1.97 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.52 6.29 -51.93 -0.33 0.20 16 42 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.17 1.86 4.97 -52.48 -0.26 1.60 16 44 H 0.08 0.92 5.44 -51.93 -0.28 0.64 16 45 H 0.08 1.07 7.03 -51.93 -0.37 0.70 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.02 0.36 6.52 -51.93 -0.34 0.02 16 50 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.07 1.94 6.89 -51.93 -0.36 1.58 16 52 H 0.04 1.18 7.08 -51.92 -0.37 0.82 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -33.64 396.21 -9.65 -43.28 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.35 Total: 3.82 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.04 Total: 1.93 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.28 Total: -61.07 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.64 -9.65 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075880285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.506 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds