Wall clock time and date at job start Wed Apr 1 2020 03:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 C 1.52995 * 109.47146 * 184.89395 * 3 2 1 5 5 C 1.53000 * 109.47459 * 65.47567 * 4 3 2 6 6 N 1.46497 * 109.47282 * 64.89000 * 3 2 1 7 7 N 1.28447 * 125.18865 * 64.62110 * 6 3 2 8 8 C 1.30870 * 110.92823 * 179.81999 * 7 6 3 9 9 C 1.39667 * 107.85719 * 0.43406 * 8 7 6 10 10 C 1.36597 * 125.19509 * 244.91996 * 6 3 2 11 11 C 1.47167 * 126.88005 * 359.97438 * 10 6 3 12 12 O 1.21625 * 120.00038 * 351.66286 * 11 10 6 13 13 N 1.34780 * 119.99780 * 171.66049 * 11 10 6 14 14 C 1.47398 * 125.58961 * 359.53829 * 13 11 10 15 15 C 1.54854 * 104.80724 * 204.60637 * 14 13 11 16 16 C 1.55116 * 101.77900 * 322.81229 * 15 14 13 17 17 H 1.09002 * 113.46584 * 159.24613 * 16 15 14 18 18 C 1.54042 * 108.25992 * 286.09283 * 16 15 14 19 19 N 1.46707 * 106.83106 * 135.80665 * 18 16 15 20 20 C 1.36939 * 125.32430 * 161.80197 * 19 18 16 21 21 H 1.07998 * 120.00309 * 5.15265 * 20 19 18 22 22 C 1.38819 * 119.99648 * 185.15367 * 20 19 18 23 23 N 1.31613 * 120.00257 * 5.61045 * 22 20 19 24 24 Si 1.86799 * 119.99557 * 185.61386 * 22 20 19 25 25 H 1.48491 * 109.47510 * 94.99399 * 24 22 20 26 26 H 1.48503 * 109.46803 * 214.99666 * 24 22 20 27 27 H 1.48507 * 109.47104 * 334.99050 * 24 22 20 28 28 C 1.46637 * 109.35151 * 341.82081 * 19 18 16 29 29 C 1.46730 * 125.58661 * 179.22592 * 13 11 10 30 30 H 1.08999 * 111.32714 * 56.12577 * 29 13 11 31 31 H 1.09002 * 109.46883 * 294.94299 * 1 2 3 32 32 H 1.09005 * 109.46863 * 54.94252 * 1 2 3 33 33 H 1.08994 * 109.47077 * 174.93802 * 1 2 3 34 34 H 1.09001 * 109.47422 * 240.00096 * 2 1 3 35 35 H 1.09004 * 109.47233 * 119.99578 * 2 1 3 36 36 H 1.09003 * 109.46956 * 304.89271 * 3 2 1 37 37 H 1.09001 * 109.47288 * 185.47883 * 4 3 2 38 38 H 1.09004 * 109.47300 * 305.47602 * 4 3 2 39 39 H 1.08995 * 109.46841 * 64.38890 * 5 4 3 40 40 H 1.09001 * 109.47292 * 184.39085 * 5 4 3 41 41 H 1.08998 * 109.46749 * 304.39036 * 5 4 3 42 42 H 1.07996 * 126.06924 * 180.18055 * 8 7 6 43 43 H 1.08003 * 127.32016 * 179.72537 * 9 8 7 44 44 H 1.09004 * 110.37287 * 323.43486 * 14 13 11 45 45 H 1.08997 * 110.37324 * 85.66093 * 14 13 11 46 46 H 1.08998 * 110.97033 * 80.93445 * 15 14 13 47 47 H 1.09001 * 110.96723 * 204.69240 * 15 14 13 48 48 H 1.09002 * 109.99355 * 255.14723 * 18 16 15 49 49 H 1.08998 * 109.98904 * 16.46489 * 18 16 15 50 50 H 0.96998 * 119.99907 * 180.02562 * 23 22 20 51 51 H 1.08995 * 109.75566 * 120.93256 * 28 19 18 52 52 H 1.09009 * 109.75545 * 241.62700 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 -0.1231 5 6 3.9672 0.8837 -1.4887 6 7 1.6502 2.0983 1.2506 7 7 2.0615 1.7647 2.4208 8 6 1.5402 2.5391 3.3380 9 6 0.7035 3.4567 2.6987 10 6 0.7894 3.1542 1.3509 11 6 0.0933 3.8341 0.2468 12 8 0.3741 3.5662 -0.9058 13 7 -0.8553 4.7538 0.5131 14 6 -1.2983 5.1648 1.8575 15 6 -2.7374 5.6990 1.6539 16 6 -2.6194 6.4118 0.2813 17 1 -3.5775 6.5499 -0.2199 18 6 -1.8398 7.7247 0.4847 19 7 -0.8723 7.8189 -0.6141 20 6 -0.2365 8.9641 -1.0133 21 1 -0.3695 9.8786 -0.4543 22 6 0.5791 8.9496 -2.1365 23 7 0.6549 7.8669 -2.8809 24 14 1.5692 10.4670 -2.5914 25 1 2.9394 10.3503 -2.0312 26 1 1.6469 10.5824 -4.0698 27 1 0.9080 11.6746 -2.0348 28 6 -0.6930 6.4949 -1.2184 29 6 -1.6119 5.5145 -0.4878 30 1 -2.1240 4.8519 -1.1855 31 1 -0.3633 0.4334 0.9318 32 1 -0.3633 0.5903 -0.8413 33 1 -0.3633 -1.0236 -0.0907 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6068 1.9810 -0.8429 37 1 3.9362 2.4645 -0.0254 38 1 3.9938 0.8247 0.6646 39 1 3.6044 1.5462 -2.2745 40 1 5.0533 0.8121 -1.5465 41 1 3.5304 -0.1065 -1.6178 42 1 1.7213 2.4768 4.4008 43 1 0.1144 4.2365 3.1585 44 1 -1.3031 4.3097 2.5334 45 1 -0.6513 5.9512 2.2462 46 1 -3.4547 4.8796 1.6075 47 1 -3.0057 6.4062 2.4388 48 1 -2.5236 8.5730 0.4527 49 1 -1.3168 7.7032 1.4408 50 1 1.2251 7.8567 -3.6655 51 1 -0.9574 6.5333 -2.2751 52 1 0.3442 6.1776 -1.1095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075880285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:27 Heat of formation + Delta-G solvation = 60.301098 kcal Electronic energy + Delta-G solvation = -32688.079908 eV Core-core repulsion = 28689.566642 eV Total energy + Delta-G solvation = -3998.513266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.63319 -41.53015 -39.25845 -37.96748 -36.59980 -34.14698 -32.91441 -32.56335 -32.30567 -32.05093 -30.24701 -28.13443 -27.35322 -26.64022 -25.04855 -23.95115 -23.41473 -22.96773 -22.43758 -21.55134 -20.64071 -19.98589 -18.92631 -18.26945 -17.79233 -17.14343 -16.91751 -16.84959 -16.11892 -15.87365 -15.69091 -15.58871 -15.48728 -15.07256 -14.74308 -14.63108 -14.49755 -14.25767 -14.07298 -13.92222 -13.53034 -13.37197 -13.14497 -13.03286 -12.97771 -12.91542 -12.81553 -12.58901 -12.36452 -12.20176 -12.09697 -12.08047 -11.87848 -11.83620 -11.70914 -11.67321 -11.52583 -11.38931 -10.94658 -10.75627 -10.23438 -9.96574 -9.67676 -8.90654 -7.84641 -5.25014 0.24445 1.29345 1.40738 1.43294 1.52472 1.69382 2.02627 2.16821 2.46453 3.24933 3.31211 3.34274 3.55821 3.64099 3.68665 3.79048 3.87179 3.99247 4.02165 4.10495 4.16781 4.22505 4.28756 4.32464 4.41333 4.46860 4.52422 4.54747 4.62949 4.64738 4.71515 4.76326 4.81204 4.87010 4.87872 4.92636 4.94590 5.00235 5.06972 5.08790 5.18776 5.21142 5.25938 5.28336 5.41025 5.46256 5.56382 5.63034 5.71479 5.81010 6.18266 6.44242 6.97655 7.06497 7.13852 7.77501 8.39128 9.22054 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010952 B = 0.003842 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.947332 B = 7286.066009 C = 8601.857419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.126 3.874 4 C -0.121 4.121 5 C -0.147 4.147 6 N -0.252 5.252 7 N -0.288 5.288 8 C -0.006 4.006 9 C -0.192 4.192 10 C -0.055 4.055 11 C 0.590 3.410 12 O -0.579 6.579 13 N -0.586 5.586 14 C 0.079 3.921 15 C -0.105 4.105 16 C -0.097 4.097 17 H 0.120 0.880 18 C 0.133 3.867 19 N -0.623 5.623 20 C -0.241 4.241 21 H 0.089 0.911 22 C -0.070 4.070 23 N -0.952 5.952 24 Si 0.976 3.024 25 H -0.293 1.293 26 H -0.296 1.296 27 H -0.258 1.258 28 C 0.192 3.808 29 C 0.123 3.877 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.222 0.778 43 H 0.194 0.806 44 H 0.116 0.884 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.118 0.882 48 H 0.046 0.954 49 H 0.034 0.966 50 H 0.243 0.757 51 H 0.019 0.981 52 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.037 -15.292 14.566 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C 0.026 3.974 4 C -0.159 4.159 5 C -0.205 4.205 6 N -0.040 5.040 7 N -0.121 5.121 8 C -0.181 4.181 9 C -0.220 4.220 10 C -0.183 4.183 11 C 0.379 3.621 12 O -0.460 6.460 13 N -0.318 5.318 14 C -0.042 4.042 15 C -0.143 4.143 16 C -0.116 4.116 17 H 0.138 0.862 18 C 0.009 3.991 19 N -0.349 5.349 20 C -0.370 4.370 21 H 0.107 0.893 22 C -0.263 4.263 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.221 1.221 26 H -0.223 1.223 27 H -0.182 1.182 28 C 0.066 3.934 29 C 0.019 3.981 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.239 0.761 43 H 0.211 0.789 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.136 0.864 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.052 0.948 51 H 0.037 0.963 52 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -2.970 -16.370 13.521 21.438 hybrid contribution 0.555 1.792 -1.052 2.151 sum -2.415 -14.577 12.469 19.334 Atomic orbital electron populations 1.21708 0.95540 1.02615 1.00565 1.21919 0.96390 0.92882 1.04752 1.22292 0.97509 0.95753 0.81847 1.21736 0.92205 1.01328 1.00612 1.21798 1.02649 1.01726 0.94313 1.45982 1.29829 1.21680 1.06544 1.73072 1.22712 1.25767 0.90529 1.24210 0.98465 0.94640 1.00771 1.23102 1.04710 1.04150 0.90075 1.21328 1.03181 0.97858 0.95980 1.16951 0.79031 0.79176 0.86918 1.90722 1.65782 1.66280 1.23178 1.48060 1.36587 1.37403 1.09738 1.23153 0.96725 1.00988 0.83334 1.22838 0.94881 1.01002 0.95602 1.23173 0.97505 0.93443 0.97486 0.86178 1.21629 0.90565 0.96265 0.90647 1.44535 1.48947 1.04585 1.36836 1.19505 1.21223 0.89017 1.07228 0.89311 1.25729 1.02386 1.00436 0.97712 1.70251 1.42851 1.29226 1.17756 0.85084 0.78390 0.79375 0.76691 1.22056 1.22276 1.18234 1.20707 0.94278 0.83779 0.94684 1.22272 0.92601 0.92208 0.91026 0.90443 0.94629 0.94057 0.90005 0.87551 0.90057 0.87619 0.94083 0.89608 0.93663 0.90535 0.90011 0.76112 0.78935 0.86592 0.91122 0.88241 0.86353 0.93609 0.94807 0.94815 0.96283 0.99716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.74 71.98 0.70 -2.73 16 2 C -0.12 -2.68 5.41 30.60 0.17 -2.52 16 3 C 0.13 3.63 2.41 44.99 0.11 3.74 16 4 C -0.12 -3.10 5.50 30.59 0.17 -2.93 16 5 C -0.15 -3.08 9.78 71.98 0.70 -2.37 16 6 N -0.25 -7.71 2.63 -314.29 -0.83 -8.54 16 7 N -0.29 -7.87 11.57 -57.14 -0.66 -8.53 16 8 C -0.01 -0.13 12.03 85.18 1.02 0.90 16 9 C -0.19 -4.70 9.26 22.65 0.21 -4.49 16 10 C -0.06 -1.81 6.89 40.79 0.28 -1.53 16 11 C 0.59 23.22 7.37 86.59 0.64 23.86 16 12 O -0.58 -27.35 14.32 -4.11 -0.06 -27.41 16 13 N -0.59 -20.53 2.99 -791.26 -2.37 -22.90 16 14 C 0.08 1.86 4.77 86.84 0.41 2.27 16 15 C -0.11 -1.99 6.35 31.95 0.20 -1.78 16 16 C -0.10 -2.85 4.35 -8.93 -0.04 -2.89 16 17 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 18 C 0.13 5.00 6.45 86.69 0.56 5.56 16 19 N -0.62 -32.46 3.38 -699.19 -2.36 -34.82 16 20 C -0.24 -13.78 10.24 84.04 0.86 -12.91 16 21 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 22 C -0.07 -4.16 5.46 84.86 0.46 -3.69 16 23 N -0.95 -61.51 10.34 21.65 0.22 -61.29 16 24 Si 0.98 47.63 29.56 68.60 2.03 49.66 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 27 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 28 C 0.19 10.25 4.97 86.34 0.43 10.68 16 29 C 0.12 4.83 3.55 45.72 0.16 4.99 16 30 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.03 0.91 7.89 -2.39 -0.02 0.90 16 32 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 1.87 6.28 -2.39 -0.01 1.86 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.11 3.80 5.34 -2.39 -0.01 3.79 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.34 6.29 -2.39 -0.02 1.33 16 42 H 0.22 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.19 3.54 4.97 -2.91 -0.01 3.52 16 44 H 0.12 2.03 5.44 -2.38 -0.01 2.02 16 45 H 0.07 1.77 7.03 -2.39 -0.02 1.75 16 46 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.12 1.57 8.08 -2.39 -0.02 1.55 16 48 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.03 1.19 6.52 -2.39 -0.02 1.18 16 50 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 51 H 0.02 1.18 6.89 -2.39 -0.02 1.17 16 52 H -0.02 -0.98 7.08 -2.38 -0.02 -0.99 16 Total: -1.00 -82.57 396.21 3.94 -78.62 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.92 Total: 21.03 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 7.05 Total: 14.17 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -5.99 Total: -136.08 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -82.57 3.94 -78.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075880285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.925 kcal (2) G-P(sol) polarization free energy of solvation -82.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds