Wall clock time and date at job start Wed Apr 1 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.53003 * 109.46737 * 175.46070 * 3 2 1 5 5 C 1.53000 * 109.47329 * 294.40773 * 4 3 2 6 6 N 1.46497 * 109.47302 * 295.45965 * 3 2 1 7 7 C 1.35034 * 124.88305 * 275.00549 * 6 3 2 8 8 C 1.35372 * 107.22641 * 179.97438 * 7 6 3 9 9 C 1.41497 * 105.50321 * 359.97438 * 8 7 6 10 10 C 1.47710 * 126.51902 * 179.97438 * 9 8 7 11 11 O 1.21570 * 120.00007 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99779 * 180.02562 * 10 9 8 13 13 C 1.47345 * 125.52608 * 359.97071 * 12 10 9 14 14 C 1.54950 * 104.90006 * 156.76284 * 13 12 10 15 15 C 1.54791 * 101.45563 * 37.25743 * 14 13 12 16 16 H 1.08998 * 112.84617 * 85.50913 * 15 14 13 17 17 C 1.53520 * 109.68754 * 212.19485 * 15 14 13 18 18 N 1.48406 * 106.16456 * 84.42960 * 17 15 14 19 19 C 1.36936 * 125.07768 * 197.28465 * 18 17 15 20 20 H 1.08004 * 119.99232 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00391 * 179.97438 * 19 18 17 22 22 N 1.31615 * 119.99868 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47299 * 60.00007 * 23 21 19 25 25 H 1.48497 * 109.47158 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47274 * 299.99849 * 23 21 19 27 27 C 1.46496 * 109.63750 * 17.28608 * 18 17 15 28 28 C 1.47264 * 125.52062 * 180.02562 * 12 10 9 29 29 H 1.08998 * 111.94701 * 56.60800 * 28 12 10 30 30 N 1.28468 * 124.88440 * 95.24624 * 6 3 2 31 31 H 1.09005 * 109.47157 * 186.79812 * 1 2 3 32 32 H 1.08995 * 109.47313 * 306.79615 * 1 2 3 33 33 H 1.09000 * 109.47181 * 66.80206 * 1 2 3 34 34 H 1.08995 * 109.47151 * 239.99758 * 2 1 3 35 35 H 1.09005 * 109.47105 * 120.00079 * 2 1 3 36 36 H 1.09002 * 109.47382 * 55.46295 * 3 2 1 37 37 H 1.09000 * 109.47290 * 54.41259 * 4 3 2 38 38 H 1.09002 * 109.46741 * 174.40581 * 4 3 2 39 39 H 1.09003 * 109.47089 * 186.18114 * 5 4 3 40 40 H 1.09002 * 109.46897 * 306.18092 * 5 4 3 41 41 H 1.08994 * 109.46957 * 66.18263 * 5 4 3 42 42 H 1.07996 * 126.38865 * 359.97438 * 7 6 3 43 43 H 1.08001 * 127.24888 * 180.02562 * 8 7 6 44 44 H 1.08997 * 110.35419 * 37.90891 * 13 12 10 45 45 H 1.09001 * 110.35359 * 275.61547 * 13 12 10 46 46 H 1.09000 * 111.03085 * 279.21575 * 14 13 12 47 47 H 1.09000 * 111.03082 * 155.30004 * 14 13 12 48 48 H 1.08992 * 109.91939 * 204.18110 * 17 15 14 49 49 H 1.08998 * 109.91845 * 325.48617 * 17 15 14 50 50 H 0.96998 * 119.99896 * 180.02562 * 22 21 19 51 51 H 1.09004 * 109.71575 * 238.31719 * 27 18 17 52 52 H 1.09000 * 109.71373 * 117.77258 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5657 1.4440 0.1142 5 6 3.9757 0.8833 1.4774 6 7 1.6429 2.1009 -1.2470 7 6 2.3296 2.0345 -2.4079 8 6 1.6476 2.7670 -3.3195 9 6 0.5179 3.2700 -2.6318 10 6 -0.5414 4.1323 -3.1941 11 8 -0.4906 4.4763 -4.3590 12 7 -1.5641 4.5379 -2.4156 13 6 -1.7465 4.1949 -0.9943 14 6 -2.6489 5.3189 -0.4258 15 6 -3.6065 5.5752 -1.6146 16 1 -4.4628 4.9008 -1.6212 17 6 -4.0144 7.0550 -1.6404 18 7 -2.9353 7.7684 -2.3676 19 6 -2.7236 9.1208 -2.3328 20 1 -3.3701 9.7534 -1.7425 21 6 -1.6783 9.6787 -3.0559 22 7 -0.8909 8.9078 -3.7756 23 14 -1.3893 11.5236 -3.0077 24 1 -1.1240 11.9467 -1.6092 25 1 -0.2208 11.8639 -3.8585 26 1 -2.5938 12.2269 -3.5176 27 6 -2.1333 6.8057 -3.1266 28 6 -2.6810 5.3947 -2.8480 29 1 -3.2127 4.9717 -3.7004 30 7 0.5938 2.8279 -1.3924 31 1 -0.3634 -1.0205 0.1217 32 1 -0.3634 0.6155 0.8229 33 1 -0.3633 0.4048 -0.9446 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 1.6118 1.9793 0.8465 37 1 3.9898 0.8245 -0.6760 38 1 3.9365 2.4642 0.0144 39 1 5.0536 0.9855 1.6030 40 1 3.4641 1.4350 2.2660 41 1 3.7016 -0.1701 1.5343 42 1 3.2510 1.4974 -2.5775 43 1 1.9101 2.9319 -4.3540 44 1 -0.7853 4.1841 -0.4805 45 1 -2.2398 3.2276 -0.8980 46 1 -2.0651 6.2100 -0.1948 47 1 -3.1973 4.9745 0.4510 48 1 -4.9673 7.1685 -2.1573 49 1 -4.0933 7.4363 -0.6224 50 1 -0.1602 9.2976 -4.2806 51 1 -1.0916 6.8649 -2.8109 52 1 -2.2067 7.0248 -4.1919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076324472.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:33 Heat of formation + Delta-G solvation = 79.513660 kcal Electronic energy + Delta-G solvation = -31912.173669 eV Core-core repulsion = 27914.493522 eV Total energy + Delta-G solvation = -3997.680147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.65308 -39.75117 -37.69135 -37.04276 -34.67812 -32.36920 -32.23027 -31.40187 -30.64757 -30.41574 -28.51652 -27.08148 -26.32040 -24.40782 -23.51788 -23.20654 -22.44152 -21.73008 -20.35813 -19.88903 -19.41327 -18.54619 -17.56302 -16.88951 -16.49777 -16.12085 -15.35118 -15.21135 -15.06990 -14.60978 -14.39749 -14.23052 -13.86833 -13.55680 -13.45123 -13.29366 -13.11443 -12.82109 -12.68480 -12.52061 -12.47878 -12.38495 -12.02042 -11.99452 -11.61642 -11.45241 -11.38293 -11.30618 -11.12404 -11.01366 -10.89415 -10.75446 -10.67767 -10.27676 -10.05925 -9.91583 -9.74747 -9.58782 -9.49016 -9.11942 -8.92533 -8.47287 -7.98159 -6.69989 -5.55319 -2.91849 1.82983 2.30086 2.37846 3.47458 3.49314 3.51931 3.54317 3.90027 3.94490 4.25782 4.48984 4.59416 4.62743 4.66458 4.71481 4.85422 4.89881 5.01763 5.07560 5.09966 5.22043 5.26303 5.38696 5.42979 5.45122 5.55605 5.56717 5.62548 5.67000 5.68754 5.72746 5.79718 5.81251 5.89600 5.93771 5.96007 6.05751 6.11235 6.21020 6.31365 6.49958 6.55371 6.69900 6.72329 6.78470 6.90298 6.99635 7.69615 7.75733 8.00944 8.03889 8.15561 8.41204 8.76221 9.35086 9.94710 10.59237 11.53674 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.002945 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.008441 B = 9505.786167 C =10027.037558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.148 3.852 4 C -0.135 4.135 5 C -0.149 4.149 6 N -0.280 5.280 7 C -0.024 4.024 8 C -0.179 4.179 9 C -0.003 4.003 10 C 0.611 3.389 11 O -0.524 6.524 12 N -0.594 5.594 13 C 0.109 3.891 14 C -0.123 4.123 15 C -0.111 4.111 16 H 0.086 0.914 17 C 0.142 3.858 18 N -0.604 5.604 19 C -0.233 4.233 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.913 5.913 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.182 3.818 28 C 0.116 3.884 29 H 0.080 0.920 30 N -0.256 5.256 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.175 0.825 43 H 0.160 0.840 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.020 0.980 49 H 0.040 0.960 50 H 0.253 0.747 51 H 0.056 0.944 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 -22.311 11.491 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.048 3.952 4 C -0.174 4.174 5 C -0.207 4.207 6 N -0.068 5.068 7 C -0.166 4.166 8 C -0.207 4.207 9 C -0.163 4.163 10 C 0.397 3.603 11 O -0.398 6.398 12 N -0.328 5.328 13 C -0.014 4.014 14 C -0.161 4.161 15 C -0.131 4.131 16 H 0.104 0.896 17 C 0.016 3.984 18 N -0.332 5.332 19 C -0.361 4.361 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.560 5.560 23 Si 0.741 3.259 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.057 3.943 28 C 0.013 3.987 29 H 0.098 0.902 30 N -0.091 5.091 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.192 0.808 43 H 0.177 0.823 44 H 0.104 0.896 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.038 0.962 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.704 -22.023 11.825 25.881 hybrid contribution 0.726 0.909 -0.784 1.402 sum 7.430 -21.114 11.042 24.959 Atomic orbital electron populations 1.21762 0.94512 1.01787 1.02985 1.22010 0.97542 0.94278 1.03449 1.21726 0.95862 0.93817 0.83832 1.21906 0.92688 1.03192 0.99575 1.21769 1.02009 1.01268 0.95684 1.45692 1.16423 1.34902 1.09802 1.22661 1.01319 1.06233 0.86404 1.21760 0.95503 1.02107 1.01284 1.22020 0.99216 1.04306 0.90786 1.16482 0.79684 0.79213 0.84918 1.90823 1.76102 1.56704 1.16203 1.48338 1.23282 1.49792 1.11369 1.22351 1.00658 0.97011 0.81369 1.22788 0.97324 0.99073 0.96907 1.22942 0.97023 0.98606 0.94515 0.89617 1.21394 0.92201 0.88798 0.95966 1.44548 1.31446 1.03079 1.54087 1.18957 1.11154 0.81145 1.24860 0.90530 1.24842 0.98122 0.97803 0.99626 1.70003 1.19588 1.32922 1.33493 0.86237 0.77301 0.85166 0.77231 1.21304 1.21676 1.21227 1.21235 0.94875 0.82048 0.96155 1.22885 0.86055 0.93541 0.96241 0.90196 1.73638 1.06711 1.08890 1.19891 0.92459 0.92105 0.92268 0.91121 0.89518 0.87391 0.90638 0.90488 0.91721 0.92040 0.91991 0.80782 0.82275 0.89614 0.92385 0.89734 0.90806 0.96208 0.94199 0.93684 0.92570 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.63 37.16 0.36 -0.84 16 2 C -0.13 -0.83 5.48 -26.73 -0.15 -0.97 16 3 C 0.15 1.11 2.65 -67.93 -0.18 0.93 16 4 C -0.14 -0.75 4.87 -26.73 -0.13 -0.88 16 5 C -0.15 -0.60 9.53 37.16 0.35 -0.25 16 6 N -0.28 -3.16 2.83 -54.83 -0.15 -3.31 16 7 C -0.02 -0.26 10.55 -17.17 -0.18 -0.44 16 8 C -0.18 -2.63 10.81 -39.36 -0.43 -3.06 16 9 C 0.00 -0.05 6.97 -82.77 -0.58 -0.63 16 10 C 0.61 12.89 7.57 -12.39 -0.09 12.80 16 11 O -0.52 -12.92 17.01 5.30 0.09 -12.83 16 12 N -0.59 -11.78 2.83 -162.93 -0.46 -12.24 16 13 C 0.11 1.75 6.11 -2.55 -0.02 1.74 16 14 C -0.12 -1.98 6.31 -24.76 -0.16 -2.13 16 15 C -0.11 -1.97 3.92 -88.21 -0.35 -2.32 16 16 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 17 C 0.14 2.98 6.65 -2.72 -0.02 2.97 16 18 N -0.60 -16.09 3.42 -170.82 -0.58 -16.68 16 19 C -0.23 -6.73 10.25 -15.06 -0.15 -6.88 16 20 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 21 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 22 N -0.91 -28.70 10.23 55.49 0.57 -28.13 16 23 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.18 4.87 4.63 -3.57 -0.02 4.85 16 28 C 0.12 2.46 3.82 -65.85 -0.25 2.21 16 29 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 30 N -0.26 -3.76 8.59 33.42 0.29 -3.47 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.36 6.52 -51.93 -0.34 0.02 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.35 7.35 -51.93 -0.38 -0.04 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.06 0.19 6.79 -51.93 -0.35 -0.16 16 42 H 0.17 1.25 7.32 -52.49 -0.38 0.86 16 43 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 44 H 0.09 1.38 6.24 -51.93 -0.32 1.06 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.62 7.94 -51.93 -0.41 1.20 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.04 0.80 7.94 -51.93 -0.41 0.39 16 50 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 51 H 0.06 1.71 6.88 -51.93 -0.36 1.35 16 52 H 0.04 1.35 7.51 -51.93 -0.39 0.96 16 LS Contribution 404.95 15.07 6.10 6.10 Total: -1.00 -36.10 404.95 -10.04 -46.13 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.79 Total: -0.37 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -2.08 Total: 6.79 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.34 Total: -63.83 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.10 -10.04 -46.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076324472.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.647 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds