Wall clock time and date at job start Wed Apr 1 2020 05:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46986 * 2 1 4 4 C 1.53000 * 109.47286 * 120.00273 * 2 1 3 5 5 N 1.46502 * 109.46988 * 64.99564 * 4 2 1 6 6 C 1.35037 * 124.87950 * 125.02764 * 5 4 2 7 7 C 1.35368 * 107.22661 * 179.72790 * 6 5 4 8 8 C 1.41499 * 105.50143 * 0.40956 * 7 6 5 9 9 C 1.47712 * 126.51885 * 179.84614 * 8 7 6 10 10 O 1.21568 * 119.99961 * 359.71315 * 9 8 7 11 11 N 1.34775 * 120.00296 * 179.71866 * 9 8 7 12 12 C 1.46499 * 120.00425 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.94371 * 336.39941 * 12 11 9 14 14 C 1.53947 * 113.66623 * 107.80773 * 12 11 9 15 15 C 1.53940 * 87.29448 * 139.20809 * 14 12 11 16 16 H 1.09000 * 113.66946 * 89.74182 * 15 14 12 17 17 N 1.46505 * 113.66236 * 220.79726 * 15 14 12 18 18 C 1.36943 * 119.99990 * 252.18832 * 17 15 14 19 19 H 1.08002 * 119.99513 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00205 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99698 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00079 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47165 * 59.99877 * 22 20 18 24 24 H 1.48495 * 109.47151 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47136 * 299.99989 * 22 20 18 26 26 C 1.52905 * 86.78782 * 335.26706 * 15 14 12 27 27 C 1.52904 * 121.14213 * 150.61642 * 26 15 14 28 28 C 1.53957 * 86.78105 * 100.82198 * 27 26 15 29 29 C 1.52914 * 121.13770 * 259.18710 * 26 15 14 30 30 N 1.28461 * 124.88922 * 305.02836 * 5 4 2 31 31 H 1.09003 * 109.47283 * 59.99552 * 1 2 3 32 32 H 1.08996 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46992 * 299.99842 * 1 2 3 34 34 H 1.09001 * 109.46992 * 240.00158 * 2 1 3 35 35 H 1.09001 * 109.46838 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47173 * 299.99996 * 3 2 1 37 37 H 1.08996 * 109.46826 * 60.00569 * 3 2 1 38 38 H 1.09001 * 109.46754 * 305.00087 * 4 2 1 39 39 H 1.09000 * 109.47023 * 184.99705 * 4 2 1 40 40 H 1.08000 * 126.38489 * 359.97438 * 6 5 4 41 41 H 1.07995 * 127.25193 * 180.26067 * 7 6 5 42 42 H 0.97005 * 119.99572 * 359.97438 * 11 9 8 43 43 H 1.09003 * 113.57959 * 24.60328 * 14 12 11 44 44 H 1.09003 * 113.57772 * 253.81080 * 14 12 11 45 45 H 0.96996 * 120.00019 * 72.18452 * 17 15 14 46 46 H 0.97001 * 119.99798 * 180.02562 * 21 20 18 47 47 H 1.09003 * 113.66244 * 346.35405 * 27 26 15 48 48 H 1.08997 * 113.66842 * 215.29629 * 27 26 15 49 49 H 1.08998 * 113.57948 * 139.33665 * 28 27 26 50 50 H 1.09000 * 113.57875 * 270.13309 * 28 27 26 51 51 H 1.08993 * 113.66382 * 144.70253 * 29 26 15 52 52 H 1.08992 * 113.66018 * 13.64281 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 2.5074 -3.1733 1.2901 7 6 1.7728 -4.3064 1.1961 8 6 0.4354 -3.8769 1.0255 9 6 -0.7524 -4.7412 0.8705 10 8 -0.6292 -5.9506 0.8777 11 7 -1.9728 -4.1891 0.7211 12 6 -3.1509 -5.0463 0.5680 13 1 -2.9080 -6.0383 0.1871 14 6 -4.0654 -5.0667 1.8062 15 6 -5.2591 -5.0251 0.8349 16 1 -5.6089 -6.0111 0.5291 17 7 -6.3446 -4.1450 1.2747 18 6 -7.5185 -4.6817 1.7322 19 1 -7.6441 -5.7538 1.7683 20 6 -8.5472 -3.8479 2.1484 21 7 -8.3942 -2.5414 2.1038 22 14 -10.1487 -4.5801 2.7717 23 1 -9.8754 -5.4318 3.9572 24 1 -11.0780 -3.4862 3.1525 25 1 -10.7657 -5.4044 1.7017 26 6 -4.3086 -4.3724 -0.1693 27 6 -4.5011 -4.5563 -1.6750 28 6 -5.1396 -3.1554 -1.6768 29 6 -4.3232 -2.8616 -0.4051 30 7 0.4502 -2.5590 1.0368 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6054 -0.2618 2.1369 39 1 3.1263 -0.6444 1.2950 40 1 3.5773 -3.1127 1.4242 41 1 2.1320 -5.3239 1.2395 42 1 -2.0711 -3.2241 0.7157 43 1 -3.9778 -4.1755 2.4277 44 1 -4.0021 -5.9914 2.3798 45 1 -6.2318 -3.1822 1.2419 46 1 -9.1130 -1.9587 2.3950 47 1 -5.1971 -5.3546 -1.9328 48 1 -3.5659 -4.6116 -2.2322 49 1 -4.8494 -2.5451 -2.5319 50 1 -6.2168 -3.1671 -1.5105 51 1 -3.3380 -2.4405 -0.6052 52 1 -4.8771 -2.3061 0.3517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078636688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:41 Heat of formation + Delta-G solvation = 95.055340 kcal Electronic energy + Delta-G solvation = -31055.315146 eV Core-core repulsion = 27058.308937 eV Total energy + Delta-G solvation = -3997.006209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.84977 -40.45012 -38.62807 -36.83106 -34.77984 -34.04323 -32.70652 -32.06925 -30.90344 -29.79580 -27.47547 -27.26504 -25.42398 -24.76442 -24.07583 -23.33152 -21.72066 -21.58286 -20.74070 -20.37226 -19.81195 -18.22778 -17.74924 -17.03658 -16.62543 -16.24420 -16.00198 -15.33653 -15.00896 -14.72749 -14.52875 -14.42550 -14.17632 -13.93100 -13.86249 -13.42077 -13.06358 -12.96183 -12.78212 -12.64179 -12.45174 -12.38432 -12.00162 -11.86550 -11.78150 -11.43774 -11.39457 -11.23862 -11.17235 -10.86603 -10.75469 -10.66140 -10.57673 -10.18911 -10.03970 -9.99613 -9.79695 -9.60509 -9.39326 -9.38568 -9.19897 -8.81297 -8.52324 -6.93711 -5.77044 -3.05038 1.53036 2.01806 2.20674 3.38536 3.45159 3.49802 3.50699 3.52792 3.98287 4.20939 4.48033 4.52848 4.60626 4.63744 4.83668 4.88412 4.89157 5.02330 5.07658 5.13862 5.21129 5.31248 5.32446 5.33221 5.45035 5.50327 5.51404 5.58887 5.62836 5.71364 5.74995 5.84268 5.97086 5.98992 6.05633 6.06979 6.10996 6.13883 6.29217 6.35461 6.39109 6.47094 6.59461 6.60226 6.67045 6.72084 6.93103 7.00062 7.14333 7.62436 7.71823 7.89811 8.40731 8.42187 9.53532 10.10787 10.45959 11.45279 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.002589 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.296522 B =10810.437830 C =11639.682755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.107 4.107 3 C -0.146 4.146 4 C 0.122 3.878 5 N -0.280 5.280 6 C -0.023 4.023 7 C -0.179 4.179 8 C -0.017 4.017 9 C 0.601 3.399 10 O -0.540 6.540 11 N -0.697 5.697 12 C 0.130 3.870 13 H 0.111 0.889 14 C -0.174 4.174 15 C 0.193 3.807 16 H 0.082 0.918 17 N -0.706 5.706 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.130 4.130 29 C -0.116 4.116 30 N -0.253 5.253 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.180 0.820 41 H 0.161 0.839 42 H 0.405 0.595 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.387 0.613 46 H 0.256 0.744 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.055 0.945 50 H 0.090 0.910 51 H 0.071 0.929 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.049 6.171 -5.510 26.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.126 4.126 3 C -0.204 4.204 4 C 0.002 3.998 5 N -0.068 5.068 6 C -0.166 4.166 7 C -0.207 4.207 8 C -0.177 4.177 9 C 0.385 3.615 10 O -0.415 6.415 11 N -0.346 5.346 12 C 0.025 3.975 13 H 0.129 0.871 14 C -0.216 4.216 15 C 0.080 3.920 16 H 0.100 0.900 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.122 4.122 27 C -0.163 4.163 28 C -0.167 4.167 29 C -0.154 4.154 30 N -0.089 5.089 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.197 0.803 41 H 0.178 0.822 42 H 0.240 0.760 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.222 0.778 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.109 0.891 51 H 0.089 0.911 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 24.263 6.277 -5.509 25.660 hybrid contribution -0.124 -0.133 0.542 0.572 sum 24.139 6.144 -4.967 25.399 Atomic orbital electron populations 1.22120 0.93258 1.04751 1.01789 1.21400 0.98229 0.96320 0.96657 1.21793 1.00835 0.94825 1.02904 1.22220 1.01166 0.75488 1.00900 1.45555 1.03620 1.07537 1.50123 1.22845 0.98030 0.86822 1.08859 1.21768 0.91525 0.99618 1.07818 1.22118 0.95503 0.89936 1.10130 1.16937 0.81614 0.86508 0.76443 1.90770 1.85736 1.13566 1.51462 1.45843 1.05929 1.10811 1.72048 1.22340 0.81965 0.94758 0.98435 0.87082 1.24278 0.98108 1.01907 0.97312 1.21055 0.86332 0.94175 0.90450 0.90024 1.42343 1.12012 1.05124 1.74943 1.19265 0.91341 0.91872 1.34813 0.91115 1.24729 0.98496 0.95330 1.02214 1.69647 1.33203 1.01609 1.53639 0.86277 0.83557 0.77676 0.78738 1.21276 1.21774 1.21262 1.23607 0.96706 0.96902 0.94951 1.22700 1.00057 0.97995 0.95569 1.22728 1.00871 0.96247 0.96861 1.22422 0.99441 0.94725 0.98795 1.73439 1.04422 1.12455 1.18585 0.92687 0.89468 0.92503 0.90619 0.92493 0.91673 0.92061 0.88754 0.87990 0.80332 0.82177 0.75954 0.90184 0.92050 0.77757 0.93469 0.91482 0.91039 0.92623 0.89148 0.91101 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.88 37.16 0.33 -1.03 16 2 C -0.11 -0.66 3.11 -90.62 -0.28 -0.94 16 3 C -0.15 -0.65 9.19 37.16 0.34 -0.30 16 4 C 0.12 0.70 5.89 -4.04 -0.02 0.68 16 5 N -0.28 -2.56 3.41 -61.33 -0.21 -2.77 16 6 C -0.02 -0.19 11.40 -17.16 -0.20 -0.39 16 7 C -0.18 -2.04 10.81 -39.36 -0.43 -2.47 16 8 C -0.02 -0.23 7.13 -82.76 -0.59 -0.82 16 9 C 0.60 9.66 7.82 -12.39 -0.10 9.57 16 10 O -0.54 -10.16 16.53 5.31 0.09 -10.08 16 11 N -0.70 -10.56 5.25 -54.36 -0.29 -10.85 16 12 C 0.13 2.12 4.12 -67.48 -0.28 1.84 16 13 H 0.11 1.88 7.46 -51.93 -0.39 1.49 16 14 C -0.17 -3.20 7.68 -25.76 -0.20 -3.40 16 15 C 0.19 3.82 4.36 -67.49 -0.29 3.53 16 16 H 0.08 1.63 8.10 -51.93 -0.42 1.20 16 17 N -0.71 -17.16 5.32 -52.99 -0.28 -17.45 16 18 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C -0.12 -1.97 1.06 -154.71 -0.16 -2.13 16 27 C -0.13 -1.91 7.84 -26.28 -0.21 -2.12 16 28 C -0.13 -2.05 8.08 -25.74 -0.21 -2.26 16 29 C -0.12 -1.85 6.78 -26.28 -0.18 -2.03 16 30 N -0.25 -3.04 8.66 33.42 0.29 -2.75 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.92 5.45 -51.93 -0.28 0.64 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.28 8.04 -51.93 -0.42 -0.13 16 40 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.40 5.73 6.76 -40.82 -0.28 5.46 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.39 9.89 5.92 -40.82 -0.24 9.65 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 51 H 0.07 0.99 7.03 -51.93 -0.36 0.62 16 52 H 0.08 1.43 6.42 -51.93 -0.33 1.10 16 LS Contribution 416.01 15.07 6.27 6.27 Total: -1.00 -32.42 416.01 -9.76 -42.18 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -8.61 Total: 14.58 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.72 Total: -9.47 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.24 Total: -60.77 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.42 -9.76 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078636688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.236 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds