Wall clock time and date at job start Wed Apr 1 2020 05:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47405 * 2 1 4 4 C 1.53006 * 109.47101 * 119.99823 * 2 1 3 5 5 N 1.46503 * 109.46944 * 174.99759 * 4 2 1 6 6 C 1.35034 * 124.88226 * 125.00550 * 5 4 2 7 7 C 1.35358 * 107.22869 * 180.02562 * 6 5 4 8 8 C 1.41506 * 105.50266 * 359.97438 * 7 6 5 9 9 C 1.47709 * 126.51651 * 180.02562 * 8 7 6 10 10 O 1.21572 * 120.00327 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00012 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99930 * 180.02562 * 11 9 8 13 13 H 1.09000 * 112.89038 * 336.33944 * 12 11 9 14 14 C 1.53954 * 113.74895 * 107.76868 * 12 11 9 15 15 C 1.53952 * 87.29622 * 139.21375 * 14 12 11 16 16 H 1.08999 * 113.74473 * 220.78425 * 15 14 12 17 17 N 1.46498 * 113.66468 * 89.73682 * 15 14 12 18 18 C 1.36943 * 119.99752 * 107.53505 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 C 1.52914 * 86.78359 * 335.26584 * 15 14 12 27 27 C 1.52904 * 121.13609 * 259.18338 * 26 15 14 28 28 C 1.53957 * 86.78142 * 209.37789 * 27 26 15 29 29 C 1.52912 * 121.13575 * 150.61720 * 26 15 14 30 30 N 1.28471 * 124.88620 * 305.33571 * 5 4 2 31 31 H 1.09006 * 109.47086 * 300.00344 * 1 2 3 32 32 H 1.09005 * 109.46759 * 59.99929 * 1 2 3 33 33 H 1.08994 * 109.47101 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47086 * 239.99656 * 2 1 3 35 35 H 1.08998 * 109.47387 * 60.00111 * 3 2 1 36 36 H 1.09001 * 109.47558 * 180.02562 * 3 2 1 37 37 H 1.09005 * 109.47220 * 299.99789 * 3 2 1 38 38 H 1.09005 * 109.46444 * 54.99886 * 4 2 1 39 39 H 1.08993 * 109.47122 * 295.00213 * 4 2 1 40 40 H 1.08001 * 126.38767 * 0.03530 * 6 5 4 41 41 H 1.08001 * 127.25429 * 179.97438 * 7 6 5 42 42 H 0.97000 * 119.99883 * 359.97438 * 11 9 8 43 43 H 1.08998 * 113.57978 * 24.61008 * 14 12 11 44 44 H 1.09001 * 113.58001 * 253.81805 * 14 12 11 45 45 H 0.97001 * 120.00384 * 287.81860 * 17 15 14 46 46 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 47 47 H 1.09002 * 113.66434 * 323.84972 * 27 26 15 48 48 H 1.08996 * 113.66452 * 94.90950 * 27 26 15 49 49 H 1.08990 * 113.57842 * 270.13126 * 28 27 26 50 50 H 1.08999 * 113.64844 * 139.34164 * 28 27 26 51 51 H 1.08996 * 113.66088 * 265.08935 * 29 26 15 52 52 H 1.08995 * 113.65977 * 36.14846 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3450 -0.3874 2.1480 7 6 5.6026 -0.6627 1.7298 8 6 5.4534 -1.2903 0.4703 9 6 6.5400 -1.7851 -0.3994 10 8 7.6988 -1.6684 -0.0505 11 7 6.2470 -2.3649 -1.5802 12 6 7.3246 -2.8562 -2.4425 13 1 8.2769 -2.3600 -2.2553 14 6 7.4273 -4.3914 -2.4930 15 6 7.6919 -4.2513 -4.0031 16 1 7.1838 -5.0013 -4.6092 17 7 9.1105 -4.1113 -4.3410 18 6 9.7787 -5.1492 -4.9340 19 1 9.2587 -6.0692 -5.1567 20 6 11.1243 -5.0187 -5.2489 21 7 11.7581 -3.8976 -4.9770 22 14 12.0356 -6.4341 -6.0585 23 1 11.1041 -7.5734 -6.2572 24 1 12.5658 -5.9937 -7.3739 25 1 13.1612 -6.8603 -5.1886 26 6 6.9459 -2.9189 -3.9227 27 6 5.4891 -2.8001 -4.3717 28 6 5.8079 -1.3358 -4.7244 29 6 7.2780 -1.7681 -4.8733 30 7 4.1609 -1.3441 0.2181 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6052 -1.7198 1.2952 39 1 1.7516 -0.1583 2.1370 40 1 4.0690 0.0935 3.0748 41 1 6.5256 -0.4485 2.2481 42 1 5.3225 -2.4577 -1.8588 43 1 6.4913 -4.8989 -2.2596 44 1 8.2756 -4.7903 -1.9368 45 1 9.5776 -3.2851 -4.1409 46 1 12.6983 -3.8063 -5.1974 47 1 5.2467 -3.4159 -5.2379 48 1 4.7707 -2.9079 -3.5592 49 1 5.6387 -0.6422 -3.9009 50 1 5.3549 -1.0023 -5.6580 51 1 7.9886 -1.0516 -4.4613 52 1 7.5384 -2.0939 -5.8803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078636689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:47 Heat of formation + Delta-G solvation = 91.500241 kcal Electronic energy + Delta-G solvation = -30883.464428 eV Core-core repulsion = 26886.304058 eV Total energy + Delta-G solvation = -3997.160370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.82743 -40.49256 -38.54290 -36.91885 -34.99769 -33.93428 -32.62303 -32.09849 -30.84736 -29.53120 -27.71885 -27.28510 -25.46573 -24.77172 -24.09631 -23.38654 -22.13615 -21.63316 -20.69836 -20.05403 -19.76418 -18.43396 -17.45588 -17.11878 -16.55497 -16.49018 -15.73989 -15.41315 -15.20861 -14.89375 -14.56336 -14.32743 -13.91517 -13.86806 -13.82867 -13.43893 -13.39393 -12.93996 -12.82004 -12.61550 -12.48396 -12.40120 -12.02667 -11.86793 -11.72238 -11.62854 -11.55457 -11.43331 -11.38479 -10.94116 -10.88561 -10.80345 -10.57492 -10.14404 -10.01268 -9.90966 -9.79514 -9.52485 -9.40193 -9.34906 -9.17796 -8.78018 -8.51586 -6.91736 -5.73288 -3.02393 1.55191 2.04160 2.20883 3.42911 3.46398 3.51870 3.54327 3.57602 3.91716 4.20665 4.40653 4.47418 4.58422 4.61000 4.73361 4.81601 4.90023 4.95551 5.02402 5.03603 5.10720 5.17601 5.24293 5.31379 5.35911 5.40961 5.52284 5.53923 5.57252 5.65530 5.71508 5.73584 5.77438 5.86558 5.98333 6.07654 6.10059 6.12797 6.17933 6.27608 6.34628 6.48117 6.56180 6.57229 6.72728 6.78800 6.85548 6.92750 7.16529 7.64436 7.75359 7.92729 8.45028 8.47629 9.56068 10.13673 10.48241 11.48883 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.002356 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.632040 B =11880.024439 C =12663.297225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.149 4.149 4 C 0.124 3.876 5 N -0.280 5.280 6 C -0.023 4.023 7 C -0.179 4.179 8 C -0.012 4.012 9 C 0.598 3.402 10 O -0.532 6.532 11 N -0.702 5.702 12 C 0.152 3.848 13 H 0.116 0.884 14 C -0.182 4.182 15 C 0.186 3.814 16 H 0.068 0.932 17 N -0.701 5.701 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.127 4.127 27 C -0.110 4.110 28 C -0.141 4.141 29 C -0.113 4.113 30 N -0.259 5.259 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.179 0.821 41 H 0.161 0.839 42 H 0.401 0.599 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.072 0.928 50 H 0.060 0.940 51 H 0.063 0.937 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.229 10.431 12.824 31.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.004 3.996 5 N -0.069 5.069 6 C -0.165 4.165 7 C -0.207 4.207 8 C -0.172 4.172 9 C 0.382 3.618 10 O -0.406 6.406 11 N -0.352 5.352 12 C 0.048 3.952 13 H 0.134 0.866 14 C -0.225 4.225 15 C 0.073 3.927 16 H 0.086 0.914 17 N -0.338 5.338 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.130 4.130 27 C -0.147 4.147 28 C -0.179 4.179 29 C -0.150 4.150 30 N -0.096 5.096 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.196 0.804 41 H 0.179 0.821 42 H 0.237 0.763 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.221 0.779 46 H 0.065 0.935 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.176 10.001 12.176 30.552 hybrid contribution 0.783 -0.178 0.378 0.888 sum -25.392 9.824 12.554 29.981 Atomic orbital electron populations 1.21785 0.93588 1.02377 1.02588 1.21449 0.96499 0.97039 0.97983 1.21845 1.01497 0.95121 1.02164 1.22164 0.73770 1.02963 1.00690 1.45499 1.07519 1.41258 1.12583 1.22820 0.89898 1.06348 0.97444 1.21799 0.97956 1.04671 0.96294 1.22097 0.90484 1.07032 0.97636 1.16965 0.86549 0.77481 0.80823 1.90821 1.19416 1.57157 1.73207 1.45955 1.10843 1.59584 1.18837 1.22326 0.90752 0.95341 0.86764 0.86589 1.24315 1.01162 0.94476 1.02535 1.20787 0.86636 0.93052 0.92218 0.91434 1.42106 1.03818 1.16972 1.70940 1.19304 0.92240 0.94142 1.31507 0.90988 1.24762 0.96821 0.97317 1.01923 1.69682 1.10006 1.25046 1.52947 0.86118 0.79807 0.81537 0.78710 1.20561 1.21926 1.21886 1.23498 0.96672 0.98599 0.94223 1.22505 0.94784 0.96961 1.00498 1.22862 0.97983 0.96195 1.00813 1.22541 0.95263 0.97017 1.00225 1.73441 1.05358 1.17013 1.13754 0.92354 0.91672 0.92125 0.89146 0.92575 0.92567 0.92001 0.88908 0.88022 0.80387 0.82129 0.76259 0.91274 0.90851 0.77898 0.93504 0.89666 0.92269 0.90934 0.92078 0.91780 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.19 37.16 0.34 -0.18 16 2 C -0.11 -0.60 2.95 -90.62 -0.27 -0.86 16 3 C -0.15 -0.89 9.08 37.15 0.34 -0.55 16 4 C 0.12 0.64 5.79 -4.04 -0.02 0.61 16 5 N -0.28 -2.48 2.86 -61.33 -0.18 -2.65 16 6 C -0.02 -0.19 11.40 -17.17 -0.20 -0.39 16 7 C -0.18 -2.12 10.81 -39.36 -0.43 -2.55 16 8 C -0.01 -0.17 7.13 -82.77 -0.59 -0.76 16 9 C 0.60 10.16 7.83 -12.39 -0.10 10.06 16 10 O -0.53 -10.99 16.52 5.30 0.09 -10.91 16 11 N -0.70 -10.89 5.28 -54.35 -0.29 -11.18 16 12 C 0.15 2.71 4.03 -67.48 -0.27 2.44 16 13 H 0.12 2.45 7.46 -51.93 -0.39 2.06 16 14 C -0.18 -3.41 7.69 -25.75 -0.20 -3.60 16 15 C 0.19 3.74 4.36 -67.48 -0.29 3.45 16 16 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 17 N -0.70 -17.60 5.09 -52.99 -0.27 -17.87 16 18 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 C -0.13 -2.13 0.92 -154.71 -0.14 -2.27 16 27 C -0.11 -1.47 7.47 -26.28 -0.20 -1.67 16 28 C -0.14 -1.90 8.08 -25.74 -0.21 -2.10 16 29 C -0.11 -1.89 7.49 -26.28 -0.20 -2.08 16 30 N -0.26 -3.09 11.26 33.42 0.38 -2.72 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.09 0.66 7.95 -51.93 -0.41 0.25 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.47 7.75 -51.93 -0.40 0.06 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.26 8.04 -51.93 -0.42 -0.16 16 40 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.40 5.45 6.45 -40.82 -0.26 5.18 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 45 H 0.39 10.45 7.81 -40.82 -0.32 10.13 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.06 0.71 6.42 -51.93 -0.33 0.37 16 49 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 52 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 422.72 15.07 6.37 6.37 Total: -1.00 -33.57 422.72 -9.72 -43.28 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -8.84 Total: 13.47 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.67 Total: -7.74 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.37 Total: -62.06 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.57 -9.72 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078636689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.782 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds