Wall clock time and date at job start Wed Apr 1 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 C 1.53005 * 109.47046 * 119.99518 * 2 1 3 5 5 N 1.46499 * 109.46956 * 174.99784 * 4 2 1 6 6 C 1.35039 * 124.87983 * 125.31040 * 5 4 2 7 7 C 1.35362 * 107.22749 * 180.15022 * 6 5 4 8 8 C 1.41500 * 105.50194 * 359.58216 * 7 6 5 9 9 C 1.47717 * 126.52190 * 180.30170 * 8 7 6 10 10 O 1.21577 * 119.99244 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00352 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99744 * 179.97438 * 11 9 8 13 13 H 1.08994 * 112.88786 * 23.65320 * 12 11 9 14 14 C 1.53952 * 113.66190 * 252.18444 * 12 11 9 15 15 C 1.53947 * 87.29819 * 220.79826 * 14 12 11 16 16 H 1.08999 * 113.66318 * 270.26596 * 15 14 12 17 17 N 1.46493 * 113.66650 * 139.20545 * 15 14 12 18 18 C 1.36946 * 120.00268 * 107.81109 * 17 15 14 19 19 H 1.07999 * 119.99574 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00002 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00237 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99695 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47126 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47236 * 120.00552 * 22 20 18 25 25 H 1.48500 * 109.47224 * 240.00371 * 22 20 18 26 26 C 1.52907 * 86.78113 * 24.73474 * 15 14 12 27 27 C 1.52913 * 121.13641 * 100.82020 * 26 15 14 28 28 C 1.53954 * 86.77866 * 100.82045 * 27 26 15 29 29 C 1.52912 * 121.13836 * 209.38251 * 26 15 14 30 30 N 1.28465 * 124.88894 * 304.97664 * 5 4 2 31 31 H 1.08995 * 109.46889 * 299.99962 * 1 2 3 32 32 H 1.08996 * 109.46693 * 60.00292 * 1 2 3 33 33 H 1.09004 * 109.46913 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.47372 * 239.99446 * 2 1 3 35 35 H 1.08996 * 109.47339 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46821 * 300.00226 * 3 2 1 37 37 H 1.09003 * 109.47319 * 59.99362 * 3 2 1 38 38 H 1.09004 * 109.46638 * 55.00430 * 4 2 1 39 39 H 1.08999 * 109.47450 * 295.00362 * 4 2 1 40 40 H 1.08000 * 126.38984 * 359.97438 * 6 5 4 41 41 H 1.08002 * 127.25204 * 179.85200 * 7 6 5 42 42 H 0.97002 * 119.99835 * 0.02562 * 11 9 8 43 43 H 1.09005 * 113.58283 * 335.40385 * 14 12 11 44 44 H 1.09005 * 113.58085 * 106.19705 * 14 12 11 45 45 H 0.97000 * 120.00213 * 287.81787 * 17 15 14 46 46 H 0.96996 * 119.99812 * 179.97438 * 21 20 18 47 47 H 1.08998 * 113.65923 * 215.28773 * 27 26 15 48 48 H 1.08997 * 113.66224 * 346.35284 * 27 26 15 49 49 H 1.08997 * 113.57913 * 270.12719 * 28 27 26 50 50 H 1.09001 * 113.64788 * 139.35133 * 28 27 26 51 51 H 1.08998 * 113.65920 * 13.64990 * 29 26 15 52 52 H 1.08996 * 113.66730 * 144.61710 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.3448 -0.3926 2.1508 7 6 5.6026 -0.6634 1.7303 8 6 5.4535 -1.2911 0.4710 9 6 6.5401 -1.7871 -0.3982 10 8 7.6988 -1.6713 -0.0487 11 7 6.2470 -2.3670 -1.5790 12 6 7.3247 -2.8583 -2.4411 13 1 8.2392 -3.0810 -1.8914 14 6 7.5507 -1.9989 -3.6983 15 6 7.7393 -3.3147 -4.4749 16 1 8.7712 -3.6650 -4.4980 17 7 7.1068 -3.3134 -5.7963 18 6 7.8793 -3.2467 -6.9252 19 1 8.9548 -3.1955 -6.8412 20 6 7.2799 -3.2450 -8.1772 21 7 5.9691 -3.3069 -8.2794 22 14 8.3337 -3.1547 -9.7169 23 1 9.7669 -3.0931 -9.3330 24 1 8.0954 -4.3599 -10.5512 25 1 7.9764 -1.9386 -10.4907 26 6 6.8906 -3.9769 -3.3890 27 6 5.4114 -4.2871 -3.6210 28 6 5.8466 -5.7406 -3.8823 29 6 7.0870 -5.4475 -3.0189 30 7 4.1607 -1.3499 0.2212 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.6054 -1.7198 1.2952 39 1 1.7517 -0.1582 2.1370 40 1 4.0685 0.0844 3.0795 41 1 6.5255 -0.4498 2.2490 42 1 5.3226 -2.4583 -1.8582 43 1 6.6701 -1.4342 -4.0046 44 1 8.4516 -1.3870 -3.6520 45 1 6.1409 -3.3597 -5.8717 46 1 5.5503 -3.3053 -9.1543 47 1 4.7947 -4.1687 -2.7301 48 1 4.9926 -3.7917 -4.4969 49 1 6.0808 -5.9444 -4.9271 50 1 5.1774 -6.4824 -3.4466 51 1 8.0067 -5.8789 -3.4139 52 1 6.9427 -5.6549 -1.9586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078636691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:03 Heat of formation + Delta-G solvation = 90.008767 kcal Electronic energy + Delta-G solvation = -30840.823674 eV Core-core repulsion = 26843.598630 eV Total energy + Delta-G solvation = -3997.225045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 7.55 seconds Orbital eigenvalues (eV) -42.82728 -40.44699 -38.62257 -36.87097 -34.77680 -34.04035 -32.68106 -32.08932 -30.85222 -29.78920 -27.64917 -27.25952 -25.42208 -24.79387 -24.07566 -23.40030 -21.69626 -21.63972 -20.61533 -20.37429 -19.71476 -18.23970 -17.73695 -16.93492 -16.58591 -16.50142 -15.98272 -15.36123 -15.00143 -14.80821 -14.54527 -14.46562 -14.07680 -13.87371 -13.82976 -13.39863 -13.35891 -12.96041 -12.76816 -12.65848 -12.44953 -12.38348 -12.00066 -11.78958 -11.66732 -11.48789 -11.43633 -11.32676 -11.17856 -10.92044 -10.88021 -10.75589 -10.65589 -10.14409 -10.02601 -9.99101 -9.79852 -9.60022 -9.40793 -9.39057 -9.18645 -8.82277 -8.51826 -6.93724 -5.77531 -3.05446 1.54718 2.02324 2.22160 3.39524 3.43783 3.50465 3.52017 3.53511 3.95371 4.26403 4.45348 4.50050 4.60234 4.62371 4.76387 4.88740 4.95046 5.02347 5.07075 5.14136 5.17876 5.20413 5.32700 5.33415 5.38683 5.42585 5.50407 5.52809 5.63155 5.65771 5.75026 5.80738 5.84432 5.97595 5.99168 6.05963 6.07285 6.13918 6.25522 6.30581 6.39347 6.47281 6.57235 6.59590 6.66885 6.72121 6.93256 7.00263 7.14397 7.63574 7.72644 7.90825 8.41102 8.42037 9.53223 10.10512 10.45600 11.44926 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.002578 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.163483 B =10856.444564 C =11823.314403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.149 4.149 4 C 0.124 3.876 5 N -0.279 5.279 6 C -0.023 4.023 7 C -0.180 4.180 8 C -0.015 4.015 9 C 0.601 3.399 10 O -0.540 6.540 11 N -0.697 5.697 12 C 0.130 3.870 13 H 0.111 0.889 14 C -0.174 4.174 15 C 0.193 3.807 16 H 0.082 0.918 17 N -0.706 5.706 18 C -0.240 4.240 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.119 4.119 27 C -0.116 4.116 28 C -0.130 4.130 29 C -0.126 4.126 30 N -0.257 5.257 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.179 0.821 41 H 0.160 0.840 42 H 0.405 0.595 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.387 0.613 46 H 0.254 0.746 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.055 0.945 51 H 0.066 0.934 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.269 4.862 23.273 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.004 3.996 5 N -0.067 5.067 6 C -0.165 4.165 7 C -0.208 4.208 8 C -0.175 4.175 9 C 0.385 3.615 10 O -0.416 6.416 11 N -0.346 5.346 12 C 0.025 3.975 13 H 0.129 0.871 14 C -0.216 4.216 15 C 0.080 3.920 16 H 0.100 0.900 17 N -0.345 5.345 18 C -0.371 4.371 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.122 4.122 27 C -0.154 4.154 28 C -0.167 4.167 29 C -0.163 4.163 30 N -0.093 5.093 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.196 0.804 41 H 0.178 0.822 42 H 0.241 0.759 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.222 0.778 46 H 0.064 0.936 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.108 0.892 50 H 0.074 0.926 51 H 0.085 0.915 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.202 4.583 22.546 25.589 hybrid contribution 0.190 0.439 -0.288 0.559 sum -11.011 5.022 22.258 25.335 Atomic orbital electron populations 1.21784 0.93535 1.02409 1.02599 1.21457 0.96569 0.97055 0.97969 1.21845 1.01450 0.95137 1.02193 1.22181 0.73655 1.03007 1.00752 1.45524 1.07625 1.41031 1.12532 1.22829 0.89918 1.06476 0.97305 1.21766 0.97890 1.04942 0.96201 1.22059 0.90517 1.07247 0.97683 1.16940 0.86518 0.77507 0.80526 1.90772 1.19490 1.57503 1.73814 1.45844 1.11016 1.59121 1.18639 1.22340 0.90621 0.95659 0.88876 0.87087 1.24277 1.01793 0.99936 0.95581 1.21056 0.95109 0.91652 0.84196 0.90013 1.42360 1.06410 1.86502 0.99183 1.19358 0.90685 1.42328 0.84765 0.91001 1.24732 0.95658 1.02905 0.97536 1.69665 1.07733 1.57648 1.23008 0.86135 0.79421 0.77136 0.83615 1.20519 1.21926 1.21938 1.23609 0.97831 0.93106 0.97633 1.22425 0.94509 0.97278 1.01190 1.22724 0.97019 0.95849 1.01111 1.22696 0.98874 0.95809 0.98935 1.73478 1.05354 1.16623 1.13819 0.92403 0.91585 0.92102 0.89029 0.92610 0.91900 0.92625 0.88873 0.88010 0.80388 0.82192 0.75912 0.90187 0.92049 0.77763 0.93577 0.91079 0.90356 0.89154 0.92620 0.91490 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.11 -0.72 2.95 -90.62 -0.27 -0.98 16 3 C -0.15 -1.04 9.08 37.16 0.34 -0.70 16 4 C 0.12 0.71 5.79 -4.04 -0.02 0.68 16 5 N -0.28 -2.56 2.86 -61.33 -0.18 -2.73 16 6 C -0.02 -0.19 11.40 -17.17 -0.20 -0.39 16 7 C -0.18 -2.06 10.81 -39.37 -0.43 -2.49 16 8 C -0.01 -0.21 7.13 -82.76 -0.59 -0.80 16 9 C 0.60 9.76 7.83 -12.39 -0.10 9.66 16 10 O -0.54 -10.23 16.52 5.30 0.09 -10.14 16 11 N -0.70 -10.69 5.25 -54.35 -0.29 -10.98 16 12 C 0.13 2.14 4.12 -67.48 -0.28 1.86 16 13 H 0.11 1.89 7.46 -51.93 -0.39 1.50 16 14 C -0.17 -3.21 7.68 -25.75 -0.20 -3.41 16 15 C 0.19 3.83 4.36 -67.49 -0.29 3.54 16 16 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 17 N -0.71 -17.20 5.32 -53.00 -0.28 -17.48 16 18 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 C -0.12 -1.98 1.06 -154.71 -0.16 -2.15 16 27 C -0.12 -1.87 6.78 -26.28 -0.18 -2.05 16 28 C -0.13 -2.07 8.08 -25.75 -0.21 -2.27 16 29 C -0.13 -1.92 7.84 -26.28 -0.21 -2.13 16 30 N -0.26 -3.16 11.27 33.42 0.38 -2.79 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 35 H 0.05 0.51 7.75 -51.93 -0.40 0.11 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.30 8.04 -51.93 -0.42 -0.12 16 40 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.40 5.84 6.76 -40.82 -0.28 5.57 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.39 9.91 5.92 -40.82 -0.24 9.67 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.07 1.01 7.03 -51.93 -0.36 0.64 16 48 H 0.08 1.44 6.42 -51.93 -0.33 1.11 16 49 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 52 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 420.13 15.07 6.33 6.33 Total: -1.00 -32.58 420.13 -9.66 -42.24 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -8.72 Total: 14.33 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.69 Total: -9.12 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.36 Total: -60.93 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.58 -9.66 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078636691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.249 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.55 seconds