Wall clock time and date at job start Wed Apr 1 2020 05:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47443 * 2 1 4 4 C 1.53005 * 109.47004 * 239.99587 * 2 1 3 5 5 N 1.46502 * 109.46915 * 120.00105 * 2 1 3 6 6 C 1.35034 * 124.88692 * 75.01763 * 5 2 1 7 7 C 1.35371 * 107.22924 * 180.02562 * 6 5 2 8 8 C 1.41496 * 105.50187 * 0.02562 * 7 6 5 9 9 C 1.47705 * 126.51803 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00207 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00345 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00304 * 179.97438 * 11 9 8 13 13 H 1.09003 * 112.88650 * 336.34723 * 12 11 9 14 14 C 1.53957 * 113.65958 * 107.81300 * 12 11 9 15 15 C 1.53953 * 87.29554 * 89.74140 * 14 12 11 16 16 H 1.08998 * 113.65962 * 270.25952 * 15 14 12 17 17 N 1.46493 * 113.74494 * 139.21230 * 15 14 12 18 18 C 1.36942 * 119.99501 * 107.76984 * 17 15 14 19 19 H 1.07997 * 120.00264 * 0.02562 * 18 17 15 20 20 C 1.38818 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99966 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99869 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.46971 * 89.99888 * 22 20 18 24 24 H 1.48501 * 109.46638 * 209.99547 * 22 20 18 25 25 H 1.48493 * 109.47045 * 329.99665 * 22 20 18 26 26 C 1.52903 * 113.66384 * 204.99917 * 12 11 9 27 27 C 1.52909 * 121.13951 * 144.70938 * 26 12 11 28 28 C 1.53944 * 86.78463 * 209.37909 * 27 26 12 29 29 C 1.52911 * 121.14062 * 36.14567 * 26 12 11 30 30 N 1.28468 * 124.88202 * 255.02346 * 5 2 1 31 31 H 1.09002 * 109.47217 * 300.00516 * 1 2 3 32 32 H 1.09003 * 109.46556 * 60.00094 * 1 2 3 33 33 H 1.08993 * 109.47533 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47103 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47168 * 299.99531 * 3 2 1 36 36 H 1.08994 * 109.47026 * 59.99367 * 3 2 1 37 37 H 1.08999 * 109.47312 * 300.00240 * 4 2 1 38 38 H 1.08994 * 109.47296 * 60.00622 * 4 2 1 39 39 H 1.08999 * 109.46521 * 180.02562 * 4 2 1 40 40 H 1.07998 * 126.38339 * 0.02562 * 6 5 2 41 41 H 1.07999 * 127.24829 * 179.97438 * 7 6 5 42 42 H 0.96998 * 120.00006 * 359.97438 * 11 9 8 43 43 H 1.09004 * 113.57496 * 204.34106 * 14 12 11 44 44 H 1.08995 * 113.58093 * 335.13600 * 14 12 11 45 45 H 0.96993 * 120.00612 * 287.77080 * 17 15 14 46 46 H 0.97000 * 119.99926 * 179.97438 * 21 20 18 47 47 H 1.08996 * 113.66096 * 323.85476 * 27 26 12 48 48 H 1.08998 * 113.66287 * 94.90489 * 27 26 12 49 49 H 1.08996 * 113.58433 * 270.12893 * 28 27 26 50 50 H 1.09003 * 113.64828 * 139.34394 * 28 27 26 51 51 H 1.08997 * 113.66296 * 265.09598 * 29 26 12 52 52 H 1.09007 * 113.65733 * 36.14601 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0057 -2.0291 1.3744 7 6 2.5352 -2.2760 2.5956 8 6 2.8613 -1.0070 3.1300 9 6 3.4693 -0.7386 4.4491 10 8 3.7381 -1.6614 5.1936 11 7 3.7251 0.5293 4.8278 12 6 4.3276 0.7955 6.1364 13 1 4.1517 -0.0051 6.8549 14 6 5.7974 1.2474 6.0594 15 6 5.2723 2.6918 5.9676 16 1 5.0895 3.0266 4.9465 17 7 6.0508 3.6534 6.7519 18 6 6.8632 4.5555 6.1181 19 1 6.9297 4.5582 5.0402 20 6 7.6006 5.4671 6.8613 21 7 8.3818 6.3338 6.2522 22 14 7.4852 5.4629 8.7257 23 1 8.5162 4.5512 9.2834 24 1 7.7108 6.8381 9.2387 25 1 6.1369 4.9961 9.1371 26 6 4.0175 2.1895 6.6827 27 6 3.8131 2.4247 8.1797 28 6 2.8774 3.5807 7.7821 29 6 2.6569 2.8464 6.4471 30 7 2.5199 -0.1100 2.2265 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6766 -1.7490 -1.2492 38 1 1.6768 -0.2076 -2.1392 39 1 3.1300 -0.7217 -1.2489 40 1 1.6412 -2.7654 0.6734 41 1 2.6779 -3.2387 3.0637 42 1 3.5103 1.2656 4.2340 43 1 6.3635 1.0464 6.9689 44 1 6.3101 0.9118 5.1581 45 1 5.9910 3.6513 7.7199 46 1 8.8968 6.9710 6.7715 47 1 3.3043 1.6044 8.6859 48 1 4.7147 2.7502 8.6985 49 1 3.3880 4.5376 7.6743 50 1 1.9795 3.6475 8.3965 51 1 2.6349 3.5089 5.5819 52 1 1.8231 2.1446 6.4664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078639353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:12 Heat of formation + Delta-G solvation = 100.814095 kcal Electronic energy + Delta-G solvation = -31147.305537 eV Core-core repulsion = 27150.549046 eV Total energy + Delta-G solvation = -3996.756491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.91008 -40.60708 -38.74510 -37.14879 -35.05724 -34.10256 -32.33121 -31.10421 -30.93060 -30.12325 -28.02239 -27.76004 -25.56392 -25.26574 -24.16666 -23.90501 -22.20864 -21.56928 -20.64061 -20.14167 -19.57301 -18.42121 -17.92052 -17.03387 -16.61303 -16.27868 -15.85687 -15.13542 -14.93931 -14.75622 -14.70802 -14.53202 -14.07465 -13.96412 -13.92454 -13.42352 -13.03340 -12.89987 -12.84614 -12.62476 -12.53484 -12.48138 -12.29974 -12.15398 -12.03432 -11.87311 -11.70013 -11.64390 -11.48237 -10.96630 -10.94414 -10.90255 -10.66681 -10.22618 -10.13463 -9.89981 -9.86176 -9.64404 -9.43750 -9.38731 -9.20910 -8.84958 -8.63348 -7.25083 -5.77813 -3.12792 1.54783 2.02290 2.14236 3.26743 3.36920 3.40130 3.45402 3.50227 3.89253 4.17855 4.28722 4.50761 4.52904 4.58362 4.73565 4.88786 4.91052 4.97438 5.01422 5.07421 5.14965 5.16181 5.17605 5.20816 5.28272 5.31958 5.39588 5.40988 5.55158 5.57348 5.61006 5.63213 5.70133 5.82466 5.87720 5.96416 5.99074 6.03989 6.11890 6.23853 6.27930 6.34794 6.38304 6.51505 6.61609 6.65295 6.77750 6.84968 7.00429 7.60430 7.88996 7.99438 8.36595 8.42237 9.20250 9.92741 10.13109 11.40539 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013951 B = 0.002658 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.573414 B =10532.759993 C =11261.774962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.159 4.159 5 N -0.272 5.272 6 C -0.022 4.022 7 C -0.179 4.179 8 C -0.018 4.018 9 C 0.605 3.395 10 O -0.539 6.539 11 N -0.690 5.690 12 C 0.131 3.869 13 H 0.098 0.902 14 C -0.174 4.174 15 C 0.198 3.802 16 H 0.084 0.916 17 N -0.733 5.733 18 C -0.245 4.245 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.880 3.120 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.275 1.275 26 C -0.125 4.125 27 C -0.111 4.111 28 C -0.134 4.134 29 C -0.123 4.123 30 N -0.253 5.253 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.407 0.593 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.364 0.636 46 H 0.259 0.741 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.059 0.941 51 H 0.067 0.933 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.200 -15.275 -13.535 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.061 5.061 6 C -0.164 4.164 7 C -0.207 4.207 8 C -0.178 4.178 9 C 0.390 3.610 10 O -0.414 6.414 11 N -0.339 5.339 12 C 0.025 3.975 13 H 0.116 0.884 14 C -0.216 4.216 15 C 0.086 3.914 16 H 0.102 0.898 17 N -0.373 5.373 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.710 3.290 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.201 1.201 26 C -0.127 4.127 27 C -0.149 4.149 28 C -0.171 4.171 29 C -0.161 4.161 30 N -0.089 5.089 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.242 0.758 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.198 0.802 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.077 0.923 51 H 0.086 0.914 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.899 -14.528 -13.465 27.378 hybrid contribution -0.027 -0.544 1.110 1.236 sum -18.927 -15.072 -12.354 27.166 Atomic orbital electron populations 1.22250 0.92238 1.03338 1.03894 1.21064 0.95009 0.94210 0.81177 1.21986 1.02721 0.92261 1.03700 1.22240 1.02704 1.01002 0.95809 1.45810 1.42554 1.04744 1.13018 1.22697 1.07431 0.86398 0.99881 1.21750 1.05286 0.98747 0.94942 1.21964 1.08041 0.91619 0.96164 1.16874 0.77452 0.83082 0.83615 1.90776 1.53440 1.44092 1.53098 1.45433 1.62115 1.07480 1.18882 1.21704 0.94730 0.96815 0.84208 0.88382 1.24237 0.94801 1.00245 1.02328 1.21274 0.87726 0.87746 0.94608 0.89771 1.42736 1.51479 1.38589 1.04472 1.19129 1.16789 1.08200 0.93407 0.89176 1.24666 0.99099 0.98004 0.97199 1.69697 1.31634 1.22409 1.34332 0.86623 0.77816 0.77074 0.87503 1.21030 1.21730 1.20104 1.23603 0.96966 0.94728 0.97442 1.22476 0.99911 0.98339 0.94176 1.22767 0.98952 0.98566 0.96863 1.22618 0.96270 0.98949 0.98238 1.73492 1.13553 1.26414 0.95448 0.91279 0.89939 0.91599 0.91131 0.90528 0.90482 0.91384 0.89692 0.91167 0.80606 0.82252 0.75811 0.89611 0.91757 0.80161 0.93059 0.90325 0.91129 0.89431 0.92252 0.91420 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 8.70 37.16 0.32 -0.45 16 2 C 0.17 1.06 1.21 -131.82 -0.16 0.90 16 3 C -0.15 -1.03 8.01 37.16 0.30 -0.73 16 4 C -0.16 -0.69 8.27 37.16 0.31 -0.39 16 5 N -0.27 -2.57 3.16 -48.61 -0.15 -2.72 16 6 C -0.02 -0.19 10.52 -17.17 -0.18 -0.37 16 7 C -0.18 -2.05 10.81 -39.36 -0.43 -2.48 16 8 C -0.02 -0.24 7.13 -82.77 -0.59 -0.83 16 9 C 0.61 9.56 7.83 -12.39 -0.10 9.46 16 10 O -0.54 -9.98 16.52 5.30 0.09 -9.89 16 11 N -0.69 -10.17 5.04 -54.35 -0.27 -10.44 16 12 C 0.13 2.07 4.12 -67.48 -0.28 1.79 16 13 H 0.10 1.61 7.46 -51.93 -0.39 1.22 16 14 C -0.17 -3.09 7.69 -25.74 -0.20 -3.29 16 15 C 0.20 3.77 4.27 -67.48 -0.29 3.48 16 16 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 17 N -0.73 -16.96 5.13 -52.99 -0.27 -17.24 16 18 C -0.25 -6.82 10.45 -15.05 -0.16 -6.98 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.20 13.97 55.49 0.78 -28.43 16 22 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 23 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.27 -6.40 6.52 56.52 0.37 -6.04 16 26 C -0.12 -1.97 0.92 -154.71 -0.14 -2.12 16 27 C -0.11 -1.71 7.47 -26.29 -0.20 -1.90 16 28 C -0.13 -2.00 8.08 -25.75 -0.21 -2.21 16 29 C -0.12 -1.75 7.49 -26.28 -0.20 -1.95 16 30 N -0.25 -3.11 10.61 33.42 0.35 -2.76 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.63 7.99 -51.93 -0.42 0.22 16 37 H 0.07 0.23 7.27 -51.93 -0.38 -0.15 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.18 0.88 7.47 -52.49 -0.39 0.49 16 41 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.41 5.61 8.34 -40.82 -0.34 5.27 16 43 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.36 8.32 3.78 -40.82 -0.15 8.16 16 46 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 47 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.07 1.20 6.42 -51.93 -0.33 0.86 16 49 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 416.62 15.07 6.28 6.28 Total: -1.00 -33.86 416.62 -8.96 -42.82 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -8.75 Total: 13.09 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.29 Total: -7.99 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.43 Total: -61.59 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.86 -8.96 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078639353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.632 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds